Wall clock time and date at job start Tue Mar 31 2020 07:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47318 * 2 1 4 4 C 1.52998 * 109.47189 * 239.99958 * 2 1 3 5 5 C 1.53004 * 109.47143 * 65.57679 * 4 2 1 6 6 C 1.53007 * 109.46642 * 66.87242 * 5 4 2 7 7 C 1.52996 * 109.46755 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47523 * 300.00291 * 7 6 5 9 9 C 1.52997 * 109.47236 * 59.99680 * 8 7 6 10 10 C 1.52996 * 109.47121 * 186.87240 * 5 4 2 11 11 C 1.50704 * 109.47138 * 119.99851 * 2 1 3 12 12 O 1.21277 * 119.99593 * 108.77223 * 11 2 1 13 13 N 1.34772 * 120.00120 * 288.77456 * 11 2 1 14 14 C 1.47071 * 136.05705 * 4.26112 * 13 11 2 15 15 C 1.53754 * 87.88584 * 152.96702 * 14 13 11 16 16 O 1.42906 * 114.39435 * 272.67423 * 15 14 13 17 17 C 1.50700 * 114.26688 * 139.79570 * 15 14 13 18 18 H 1.07999 * 119.99900 * 266.47677 * 17 15 14 19 19 C 1.37880 * 120.00346 * 86.47334 * 17 15 14 20 20 N 1.31509 * 119.99657 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00128 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46948 * 90.00103 * 21 19 17 23 23 H 1.48501 * 109.46995 * 209.99899 * 21 19 17 24 24 H 1.48503 * 109.46832 * 329.99812 * 21 19 17 25 25 C 1.47066 * 136.06012 * 184.63627 * 13 11 2 26 26 H 1.08995 * 109.47089 * 184.65157 * 1 2 3 27 27 H 1.09002 * 109.46710 * 304.65268 * 1 2 3 28 28 H 1.08999 * 109.47271 * 64.65043 * 1 2 3 29 29 H 1.09000 * 109.47094 * 305.58465 * 4 2 1 30 30 H 1.09000 * 109.47403 * 185.58002 * 4 2 1 31 31 H 1.08997 * 109.47278 * 306.87624 * 5 4 2 32 32 H 1.08997 * 109.46972 * 60.00195 * 6 5 4 33 33 H 1.08994 * 109.47313 * 299.99970 * 6 5 4 34 34 H 1.09004 * 109.47440 * 60.00389 * 7 6 5 35 35 H 1.08999 * 109.47319 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47233 * 180.02562 * 8 7 6 37 37 H 1.09013 * 109.46899 * 299.99839 * 8 7 6 38 38 H 1.09003 * 109.46954 * 180.02562 * 9 8 7 39 39 H 1.09004 * 109.46564 * 60.00613 * 9 8 7 40 40 H 1.08999 * 109.47044 * 299.99909 * 10 5 4 41 41 H 1.08999 * 109.47390 * 60.00326 * 10 5 4 42 42 H 1.08997 * 113.46922 * 267.69670 * 14 13 11 43 43 H 1.09003 * 113.46728 * 38.13936 * 14 13 11 44 44 H 0.96696 * 114.00227 * 273.58976 * 16 15 14 45 45 H 0.97005 * 120.00068 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.46710 * 321.86546 * 25 13 11 47 47 H 1.09002 * 113.46557 * 92.24503 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6477 0.0764 -2.4946 6 6 2.4041 1.4063 -2.5075 7 6 2.0123 2.2037 -3.7531 8 6 2.3699 1.4013 -5.0057 9 6 1.6136 0.0714 -4.9927 10 6 2.0049 -0.7258 -3.7474 11 6 2.0324 -0.7104 1.2305 12 8 2.5532 -1.8011 1.1308 13 7 1.9028 -0.1336 2.4417 14 6 1.2852 1.0919 2.9704 15 6 1.1171 0.3602 4.3122 16 8 -0.0903 -0.3959 4.4250 17 6 1.4013 1.2124 5.5222 18 1 2.3880 1.2146 5.9614 19 6 0.4018 1.9893 6.0686 20 7 -0.7998 1.9862 5.5340 21 14 0.7544 3.0461 7.5680 22 1 1.2165 4.3878 7.1303 23 1 -0.4837 3.1882 8.3756 24 1 1.8105 2.4025 8.3899 25 6 2.3227 -0.4494 3.8153 26 1 -0.3633 -1.0242 0.0833 27 1 -0.3633 0.5844 0.8454 28 1 -0.3634 0.4400 -0.9287 29 1 1.5973 -1.7160 -1.3006 30 1 3.1254 -0.8086 -1.2007 31 1 0.5749 0.2687 -2.4798 32 1 3.4769 1.2140 -2.5222 33 1 2.1496 1.9778 -1.6149 34 1 0.9395 2.3960 -3.7389 35 1 2.5508 3.1513 -3.7622 36 1 2.0912 1.9696 -5.8931 37 1 3.4429 1.2090 -5.0200 38 1 1.8688 -0.5004 -5.8850 39 1 0.5408 0.2638 -4.9785 40 1 3.0777 -0.9180 -3.7621 41 1 1.4661 -1.6732 -3.7382 42 1 1.9714 1.9373 3.0200 43 1 0.3396 1.3435 2.4900 44 1 -0.8478 0.1170 4.7382 45 1 -1.5029 2.5330 5.9181 46 1 2.2611 -1.5110 4.0548 47 1 3.2829 -0.0111 4.0873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408157642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:48 Heat of formation + Delta-G solvation = -87.914925 kcal Electronic energy + Delta-G solvation = -24771.333820 eV Core-core repulsion = 21339.742625 eV Total energy + Delta-G solvation = -3431.591195 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87220 -38.88826 -37.43426 -34.56003 -33.99357 -32.19267 -31.03896 -30.70365 -28.49166 -26.23079 -25.51455 -25.04258 -23.26957 -22.61001 -20.87119 -19.87323 -19.45412 -18.05202 -17.43868 -16.38078 -15.66242 -15.31279 -15.00368 -14.93135 -14.50904 -14.23466 -14.18709 -14.09128 -13.55895 -13.10636 -13.03149 -12.63591 -12.48055 -12.30113 -12.10939 -11.92957 -11.75834 -11.71567 -11.55767 -11.25212 -11.21510 -11.07156 -10.98040 -10.79961 -10.69290 -10.48650 -10.38063 -10.24158 -10.08383 -9.94723 -9.52389 -9.08262 -8.77206 -8.35979 -7.79381 -6.40960 -4.51144 3.13279 3.21691 3.24547 3.27762 3.61382 4.17304 4.54780 4.59154 4.64899 4.81890 4.97496 5.00110 5.06570 5.21665 5.34725 5.36248 5.42048 5.43815 5.47860 5.55416 5.57084 5.67172 5.76302 5.89420 5.89763 5.96810 5.99205 6.03021 6.05110 6.07310 6.14752 6.19577 6.21482 6.26795 6.30296 6.46118 6.48090 6.52916 6.57016 6.70622 6.75256 7.11912 7.62308 7.80883 8.51589 8.59081 8.83991 9.20280 9.49541 10.65546 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.003262 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.792392 B = 8581.700560 C = 9062.133952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.092 4.092 5 C -0.089 4.089 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.538 3.462 12 O -0.566 6.566 13 N -0.634 5.634 14 C 0.071 3.929 15 C 0.241 3.759 16 O -0.570 6.570 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.104 3.896 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.393 0.607 45 H 0.274 0.726 46 H 0.064 0.936 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 1.942 -16.183 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.107 0.893 4 C -0.130 4.130 5 C -0.107 4.107 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.151 4.151 11 C 0.328 3.672 12 O -0.446 6.446 13 N -0.367 5.367 14 C -0.052 4.052 15 C 0.199 3.801 16 O -0.383 6.383 17 C -0.571 4.571 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.018 4.018 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.250 0.750 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.981 0.871 -16.626 16.914 hybrid contribution -0.212 1.206 0.937 1.542 sum 2.770 2.078 -15.689 16.067 Atomic orbital electron populations 1.21797 0.93067 1.02752 1.02420 1.21233 0.97720 1.00497 0.92928 0.89266 1.21419 1.01332 0.98776 0.91499 1.21252 1.00453 0.94889 0.94124 1.21658 1.00206 0.95931 0.97715 1.21532 1.01272 0.98171 0.94715 1.21535 1.00267 0.96208 0.97671 1.21522 1.00201 0.96136 0.97782 1.21561 1.01402 0.98242 0.93927 1.20104 0.78621 0.85592 0.82901 1.90615 1.46798 1.21226 1.86005 1.49719 1.55301 1.25632 1.06011 1.24271 0.96493 0.87923 0.96537 1.19565 0.83012 0.87150 0.90390 1.86052 1.21364 1.41396 1.89530 1.21449 0.97974 1.24897 1.12824 0.90991 1.25076 0.94707 0.96042 0.97233 1.69262 1.02386 1.41051 1.41181 0.86316 0.78092 0.80180 0.81854 1.20295 1.20885 1.19533 1.23306 0.98972 1.00996 0.78533 0.92342 0.91566 0.91783 0.91226 0.91632 0.90768 0.92061 0.91667 0.92073 0.92259 0.92443 0.92174 0.92346 0.92108 0.92054 0.92005 0.90329 0.91631 0.75045 0.91599 0.91706 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.05 37.16 0.34 -1.76 16 2 C -0.10 -1.60 2.44 -91.77 -0.22 -1.82 16 3 H 0.09 1.30 6.40 -51.93 -0.33 0.96 16 4 C -0.09 -1.27 3.43 -26.73 -0.09 -1.36 16 5 C -0.09 -0.96 2.08 -90.62 -0.19 -1.15 16 6 C -0.12 -1.21 5.00 -26.73 -0.13 -1.34 16 7 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 8 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 9 C -0.12 -1.01 5.92 -26.76 -0.16 -1.17 16 10 C -0.11 -1.11 5.20 -26.76 -0.14 -1.25 16 11 C 0.54 11.00 7.30 -10.99 -0.08 10.92 16 12 O -0.57 -13.23 16.83 5.56 0.09 -13.14 16 13 N -0.63 -13.47 3.69 -185.06 -0.68 -14.16 16 14 C 0.07 1.50 7.75 -8.37 -0.06 1.44 16 15 C 0.24 5.76 1.58 -91.13 -0.14 5.62 16 16 O -0.57 -14.74 13.55 -35.23 -0.48 -15.22 16 17 C -0.53 -13.26 8.70 -34.44 -0.30 -13.56 16 18 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 19 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 20 N -0.90 -22.48 11.01 55.43 0.61 -21.87 16 21 Si 0.91 19.23 29.54 -169.99 -5.02 14.21 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 25 C 0.10 2.31 8.02 -8.52 -0.07 2.24 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16 28 H 0.06 0.77 6.25 -51.93 -0.32 0.44 16 29 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 30 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.07 0.80 6.21 -51.93 -0.32 0.48 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.70 6.52 -51.93 -0.34 0.36 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 43 H 0.07 1.38 6.48 -51.93 -0.34 1.04 16 44 H 0.39 10.22 6.32 45.56 0.29 10.51 16 45 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 46 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 47 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -27.57 362.27 -9.26 -36.83 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.57 Total: 11.77 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.67 Total: -3.89 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.07 Total: -36.03 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.38 Total: -28.36 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.57 -9.26 -36.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408157642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.081 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds