Wall clock time and date at job start Tue Mar 31 2020 07:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47318 * 2 1 4 4 C 1.52998 * 109.47189 * 239.99958 * 2 1 3 5 5 C 1.53004 * 109.47143 * 65.57679 * 4 2 1 6 6 C 1.53007 * 109.46642 * 66.87242 * 5 4 2 7 7 C 1.52996 * 109.46755 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47523 * 300.00291 * 7 6 5 9 9 C 1.52997 * 109.47236 * 59.99680 * 8 7 6 10 10 C 1.52996 * 109.47121 * 186.87240 * 5 4 2 11 11 C 1.50704 * 109.47138 * 119.99851 * 2 1 3 12 12 O 1.21277 * 119.99593 * 108.77223 * 11 2 1 13 13 N 1.34772 * 120.00120 * 288.77456 * 11 2 1 14 14 C 1.47071 * 136.05705 * 4.26112 * 13 11 2 15 15 C 1.53754 * 87.88584 * 152.96702 * 14 13 11 16 16 O 1.42906 * 114.39435 * 272.67423 * 15 14 13 17 17 C 1.50700 * 114.26688 * 139.79570 * 15 14 13 18 18 H 1.07999 * 119.99900 * 266.47677 * 17 15 14 19 19 C 1.37880 * 120.00346 * 86.47334 * 17 15 14 20 20 N 1.31509 * 119.99657 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00128 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46948 * 90.00103 * 21 19 17 23 23 H 1.48501 * 109.46995 * 209.99899 * 21 19 17 24 24 H 1.48503 * 109.46832 * 329.99812 * 21 19 17 25 25 C 1.47066 * 136.06012 * 184.63627 * 13 11 2 26 26 H 1.08995 * 109.47089 * 184.65157 * 1 2 3 27 27 H 1.09002 * 109.46710 * 304.65268 * 1 2 3 28 28 H 1.08999 * 109.47271 * 64.65043 * 1 2 3 29 29 H 1.09000 * 109.47094 * 305.58465 * 4 2 1 30 30 H 1.09000 * 109.47403 * 185.58002 * 4 2 1 31 31 H 1.08997 * 109.47278 * 306.87624 * 5 4 2 32 32 H 1.08997 * 109.46972 * 60.00195 * 6 5 4 33 33 H 1.08994 * 109.47313 * 299.99970 * 6 5 4 34 34 H 1.09004 * 109.47440 * 60.00389 * 7 6 5 35 35 H 1.08999 * 109.47319 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47233 * 180.02562 * 8 7 6 37 37 H 1.09013 * 109.46899 * 299.99839 * 8 7 6 38 38 H 1.09003 * 109.46954 * 180.02562 * 9 8 7 39 39 H 1.09004 * 109.46564 * 60.00613 * 9 8 7 40 40 H 1.08999 * 109.47044 * 299.99909 * 10 5 4 41 41 H 1.08999 * 109.47390 * 60.00326 * 10 5 4 42 42 H 1.08997 * 113.46922 * 267.69670 * 14 13 11 43 43 H 1.09003 * 113.46728 * 38.13936 * 14 13 11 44 44 H 0.96696 * 114.00227 * 273.58976 * 16 15 14 45 45 H 0.97005 * 120.00068 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.46710 * 321.86546 * 25 13 11 47 47 H 1.09002 * 113.46557 * 92.24503 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6477 0.0764 -2.4946 6 6 2.4041 1.4063 -2.5075 7 6 2.0123 2.2037 -3.7531 8 6 2.3699 1.4013 -5.0057 9 6 1.6136 0.0714 -4.9927 10 6 2.0049 -0.7258 -3.7474 11 6 2.0324 -0.7104 1.2305 12 8 2.5532 -1.8011 1.1308 13 7 1.9028 -0.1336 2.4417 14 6 1.2852 1.0919 2.9704 15 6 1.1171 0.3602 4.3122 16 8 -0.0903 -0.3959 4.4250 17 6 1.4013 1.2124 5.5222 18 1 2.3880 1.2146 5.9614 19 6 0.4018 1.9893 6.0686 20 7 -0.7998 1.9862 5.5340 21 14 0.7544 3.0461 7.5680 22 1 1.2165 4.3878 7.1303 23 1 -0.4837 3.1882 8.3756 24 1 1.8105 2.4025 8.3899 25 6 2.3227 -0.4494 3.8153 26 1 -0.3633 -1.0242 0.0833 27 1 -0.3633 0.5844 0.8454 28 1 -0.3634 0.4400 -0.9287 29 1 1.5973 -1.7160 -1.3006 30 1 3.1254 -0.8086 -1.2007 31 1 0.5749 0.2687 -2.4798 32 1 3.4769 1.2140 -2.5222 33 1 2.1496 1.9778 -1.6149 34 1 0.9395 2.3960 -3.7389 35 1 2.5508 3.1513 -3.7622 36 1 2.0912 1.9696 -5.8931 37 1 3.4429 1.2090 -5.0200 38 1 1.8688 -0.5004 -5.8850 39 1 0.5408 0.2638 -4.9785 40 1 3.0777 -0.9180 -3.7621 41 1 1.4661 -1.6732 -3.7382 42 1 1.9714 1.9373 3.0200 43 1 0.3396 1.3435 2.4900 44 1 -0.8478 0.1170 4.7382 45 1 -1.5029 2.5330 5.9181 46 1 2.2611 -1.5110 4.0548 47 1 3.2829 -0.0111 4.0873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408157642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:47 Heat of formation + Delta-G solvation = -103.502688 kcal Electronic energy + Delta-G solvation = -24772.009756 eV Core-core repulsion = 21339.742625 eV Total energy + Delta-G solvation = -3432.267131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46628 -39.99749 -38.98331 -35.89458 -35.73814 -34.12138 -32.00036 -31.53036 -30.17591 -27.35659 -27.27251 -26.77690 -24.43434 -23.41267 -22.11073 -21.13408 -20.45651 -19.74433 -19.22763 -17.96109 -17.28763 -16.79877 -16.47118 -16.08319 -15.95625 -15.79835 -15.06175 -14.97898 -14.88235 -14.56450 -14.38382 -14.12842 -13.86956 -13.68870 -13.41270 -13.26951 -13.06106 -12.85150 -12.80722 -12.74009 -12.67235 -12.24832 -12.23340 -12.03800 -11.96004 -11.92783 -11.62089 -11.35254 -11.21005 -10.91399 -10.82180 -10.76396 -10.60030 -10.19691 -9.56271 -8.27185 -6.44225 1.47080 1.50688 1.59568 1.64105 1.98832 2.41008 2.94765 3.41187 3.67255 3.73711 3.81528 3.95222 4.03650 4.07439 4.16219 4.29770 4.36433 4.43678 4.50307 4.55861 4.58381 4.63154 4.66498 4.69852 4.74042 4.78509 4.82279 4.87035 4.93120 4.96259 4.99061 5.12533 5.19048 5.22932 5.25767 5.27864 5.31274 5.37523 5.42170 5.45169 5.54281 5.67067 5.73019 5.91492 6.61353 6.90868 7.16032 7.29926 7.49596 8.78873 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.003262 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.792392 B = 8581.700560 C = 9062.133952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.106 0.894 4 C -0.085 4.085 5 C -0.081 4.081 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.528 3.472 12 O -0.600 6.600 13 N -0.636 5.636 14 C 0.087 3.913 15 C 0.220 3.780 16 O -0.586 6.586 17 C -0.553 4.553 18 H 0.073 0.927 19 C 0.033 3.967 20 N -0.916 5.916 21 Si 0.971 3.029 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.102 3.898 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.389 0.611 45 H 0.277 0.723 46 H 0.048 0.952 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 3.581 -17.415 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.124 0.876 4 C -0.123 4.123 5 C -0.099 4.099 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.156 4.156 9 C -0.154 4.154 10 C -0.152 4.152 11 C 0.320 3.680 12 O -0.483 6.483 13 N -0.368 5.368 14 C -0.036 4.036 15 C 0.179 3.821 16 O -0.399 6.399 17 C -0.591 4.591 18 H 0.091 0.909 19 C -0.168 4.168 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.021 4.021 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.245 0.755 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.988 2.516 -17.872 18.293 hybrid contribution -0.204 0.627 1.341 1.494 sum 2.784 3.142 -16.531 17.056 Atomic orbital electron populations 1.21769 0.92082 1.02007 1.03549 1.21287 0.98307 1.00809 0.91046 0.87644 1.21369 1.00346 0.98473 0.92102 1.21193 1.00821 0.94895 0.92979 1.21655 0.99847 0.95616 0.98438 1.21523 1.01583 0.98249 0.94134 1.21542 1.00146 0.96100 0.97848 1.21509 1.00456 0.96136 0.97260 1.21555 1.01163 0.98325 0.94107 1.21076 0.77812 0.85330 0.83740 1.90591 1.48321 1.22863 1.86528 1.49799 1.55344 1.25644 1.06059 1.24066 0.96860 0.87893 0.94775 1.19835 0.82682 0.87929 0.91654 1.86037 1.21986 1.42196 1.89681 1.21657 0.98333 1.25482 1.13648 0.90874 1.25759 0.94508 0.96977 0.99507 1.69320 1.02908 1.41392 1.42063 0.85357 0.77665 0.78767 0.78651 1.19510 1.20888 1.19628 1.23340 0.99359 0.99945 0.79463 0.93599 0.92984 0.88449 0.92571 0.92851 0.90093 0.92539 0.92080 0.91681 0.91652 0.91237 0.92370 0.91424 0.91702 0.92499 0.92124 0.88918 0.91492 0.75503 0.91320 0.93364 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.05 71.98 0.65 -3.19 16 2 C -0.09 -2.83 2.44 -11.54 -0.03 -2.86 16 3 H 0.11 2.88 6.40 -2.39 -0.02 2.87 16 4 C -0.08 -2.28 3.43 30.59 0.11 -2.17 16 5 C -0.08 -1.60 2.08 -10.79 -0.02 -1.62 16 6 C -0.12 -2.19 5.00 30.59 0.15 -2.04 16 7 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 8 C -0.12 -1.66 5.92 30.59 0.18 -1.48 16 9 C -0.12 -1.68 5.92 30.58 0.18 -1.50 16 10 C -0.11 -2.03 5.20 30.58 0.16 -1.88 16 11 C 0.53 21.67 7.30 87.66 0.64 22.31 16 12 O -0.60 -28.57 16.83 -3.02 -0.05 -28.62 16 13 N -0.64 -27.04 3.69 -858.27 -3.16 -30.20 16 14 C 0.09 3.64 7.75 83.26 0.65 4.28 16 15 C 0.22 10.59 1.58 -11.12 -0.02 10.57 16 16 O -0.59 -30.84 13.55 -148.98 -2.02 -32.86 16 17 C -0.55 -27.34 8.70 25.60 0.22 -27.12 16 18 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 19 C 0.03 1.60 5.39 84.66 0.46 2.06 16 20 N -0.92 -45.51 11.01 21.45 0.24 -45.27 16 21 Si 0.97 38.74 29.54 68.60 2.03 40.77 16 22 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 23 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 25 C 0.10 4.55 8.02 83.17 0.67 5.22 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.62 6.34 -2.39 -0.02 1.60 16 28 H 0.10 2.08 6.25 -2.39 -0.01 2.06 16 29 H 0.06 1.65 8.12 -2.39 -0.02 1.63 16 30 H 0.05 1.55 8.10 -2.39 -0.02 1.54 16 31 H 0.08 1.52 6.21 -2.39 -0.01 1.50 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.18 6.52 -2.39 -0.02 1.17 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 3.61 8.10 -2.39 -0.02 3.59 16 43 H 0.07 2.78 6.48 -2.39 -0.02 2.76 16 44 H 0.39 20.62 6.32 -74.06 -0.47 20.15 16 45 H 0.28 12.99 8.31 -92.70 -0.77 12.22 16 46 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.10 4.11 8.10 -2.39 -0.02 4.09 16 Total: -1.00 -58.50 362.27 1.68 -56.82 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: 0.48 Total: 40.40 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.18 Total: -1.03 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -2.93 Total: -75.47 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -2.07 Total: -61.48 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -58.50 1.68 -56.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408157642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.681 kcal (2) G-P(sol) polarization free energy of solvation -58.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds