Wall clock time and date at job start Tue Mar 31 2020 07:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00120 * 2 1 3 5 5 C 1.50700 * 109.46847 * 294.99705 * 4 2 1 6 6 O 1.21284 * 120.00193 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99917 * 179.97438 * 5 4 2 8 8 C 1.47072 * 136.05739 * 359.64107 * 7 5 4 9 9 C 1.53242 * 88.08305 * 207.19765 * 8 7 5 10 10 O 1.42897 * 114.01938 * 87.70910 * 9 8 7 11 11 C 1.50698 * 114.50268 * 220.45909 * 9 8 7 12 12 H 1.07992 * 120.00132 * 93.84974 * 11 9 8 13 13 C 1.37881 * 119.99378 * 273.83986 * 11 9 8 14 14 N 1.31510 * 120.00565 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99406 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47475 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46931 * 120.00146 * 15 13 11 18 18 H 1.48505 * 109.46751 * 239.99771 * 15 13 11 19 19 C 1.47069 * 136.05712 * 180.02562 * 7 5 4 20 20 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 21 21 C 1.53002 * 109.47415 * 59.99902 * 20 2 1 22 22 C 1.53000 * 109.47233 * 180.02562 * 21 20 2 23 23 C 1.52997 * 109.47060 * 299.99657 * 22 21 20 24 24 C 1.52999 * 109.47317 * 59.99960 * 23 22 21 25 25 C 1.52997 * 109.47232 * 179.97438 * 20 2 1 26 26 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 27 27 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 29 29 H 1.08997 * 109.47011 * 55.00008 * 4 2 1 30 30 H 1.08995 * 109.46928 * 174.99938 * 4 2 1 31 31 H 1.09005 * 113.46520 * 321.92794 * 8 7 5 32 32 H 1.08992 * 113.46739 * 92.36655 * 8 7 5 33 33 H 0.96706 * 113.99587 * 86.38484 * 10 9 8 34 34 H 0.96999 * 120.00237 * 180.02562 * 14 13 11 35 35 H 1.09004 * 113.46387 * 267.63068 * 19 7 5 36 36 H 1.08991 * 113.46666 * 38.06812 * 19 7 5 37 37 H 1.09002 * 109.47497 * 299.99550 * 20 2 1 38 38 H 1.08992 * 109.47063 * 59.99950 * 21 20 2 39 39 H 1.09004 * 109.46733 * 299.99664 * 21 20 2 40 40 H 1.09002 * 109.47398 * 59.99826 * 22 21 20 41 41 H 1.09001 * 109.47194 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47853 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 44 44 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 46 46 H 1.09002 * 109.47153 * 299.99992 * 25 20 2 47 47 H 1.09001 * 109.47289 * 60.00075 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0571 2.4765 6 8 1.0111 1.0870 2.3633 7 7 1.9847 -0.3919 3.7001 8 6 2.7106 -1.5528 4.2370 9 6 1.8872 -1.4087 5.5214 10 8 0.6417 -2.1088 5.4955 11 6 2.6675 -1.6278 6.7919 12 1 3.1014 -0.7861 7.3110 13 6 2.8272 -2.9030 7.2915 14 7 2.2990 -3.9280 6.6592 15 14 3.7938 -3.1745 8.8668 16 1 4.2804 -1.8689 9.3803 17 1 2.9164 -3.8094 9.8827 18 1 4.9525 -4.0611 8.5899 19 6 1.7922 0.0601 5.0863 20 6 2.0400 -0.7212 -1.2493 21 6 1.5300 0.0000 -2.4985 22 6 2.0394 -0.7216 -3.7478 23 6 3.5694 -0.7220 -3.7481 24 6 4.0795 -1.4432 -2.4989 25 6 3.5699 -0.7207 -1.2496 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.6055 -1.7198 1.2951 30 1 3.1264 -0.7994 1.2055 31 1 2.5104 -2.4779 3.6963 32 1 3.7754 -1.3702 4.3811 33 1 0.7048 -3.0339 5.7700 34 1 2.4110 -4.8250 7.0109 35 1 2.6098 0.6770 5.4592 36 1 0.8130 0.5035 5.2663 37 1 1.6767 -1.7489 -1.2493 38 1 1.8933 1.0276 -2.4985 39 1 0.4399 0.0000 -2.4985 40 1 1.6758 -1.7491 -3.7476 41 1 1.6765 -0.2075 -4.6378 42 1 3.9325 -1.2357 -4.6383 43 1 3.9331 0.3055 -3.7483 44 1 5.1695 -1.4432 -2.4989 45 1 3.7159 -2.4708 -2.4987 46 1 3.9329 0.3071 -1.2498 47 1 3.9337 -1.2343 -0.3597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408297382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:13 Heat of formation + Delta-G solvation = -86.330856 kcal Electronic energy + Delta-G solvation = -24664.479107 eV Core-core repulsion = 21232.956602 eV Total energy + Delta-G solvation = -3431.522505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.86056 -38.99770 -37.44442 -34.57775 -33.96829 -32.19719 -31.02873 -29.85826 -28.86716 -27.15601 -25.16680 -25.03584 -23.20957 -22.45054 -20.49548 -19.88298 -19.55867 -18.15219 -17.41909 -16.41595 -15.60169 -15.41574 -15.22232 -14.71813 -14.46062 -14.25652 -14.15230 -13.87827 -13.59169 -13.26683 -12.96087 -12.82067 -12.54340 -12.42031 -12.02361 -11.85082 -11.69622 -11.56942 -11.40484 -11.21365 -11.09802 -11.05687 -11.00058 -10.92859 -10.62306 -10.48243 -10.39126 -10.24963 -10.03624 -9.87613 -9.53666 -9.07568 -8.77259 -8.38029 -7.79731 -6.41432 -4.51681 3.12310 3.21911 3.25323 3.28467 3.62183 4.17144 4.55248 4.59639 4.65527 4.81654 4.98253 5.05004 5.06958 5.26812 5.31349 5.40548 5.40865 5.42980 5.54369 5.57773 5.63821 5.71488 5.84926 5.88828 5.90361 5.95771 5.96596 6.04419 6.05698 6.12592 6.13535 6.16880 6.23262 6.33544 6.35035 6.43125 6.53003 6.59111 6.67727 6.70619 6.71699 7.11675 7.62029 7.80551 8.51591 8.59278 8.84490 9.19942 9.48779 10.65156 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.003209 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.908624 B = 8724.076994 C = 9309.993107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.067 4.067 3 H 0.075 0.925 4 C -0.131 4.131 5 C 0.535 3.465 6 O -0.563 6.563 7 N -0.636 5.636 8 C 0.072 3.928 9 C 0.239 3.761 10 O -0.572 6.572 11 C -0.532 4.532 12 H 0.073 0.927 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.909 3.091 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.106 3.894 20 C -0.082 4.082 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.393 0.607 34 H 0.273 0.727 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 2.224 -16.043 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 H 0.093 0.907 4 C -0.171 4.171 5 C 0.325 3.675 6 O -0.444 6.444 7 N -0.369 5.369 8 C -0.051 4.051 9 C 0.197 3.803 10 O -0.385 6.385 11 C -0.571 4.571 12 H 0.091 0.909 13 C -0.131 4.131 14 N -0.539 5.539 15 Si 0.736 3.264 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.017 4.017 20 C -0.100 4.100 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.157 4.157 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.257 3.198 -16.507 16.965 hybrid contribution 0.879 -0.919 0.950 1.587 sum 3.136 2.279 -15.558 16.033 Atomic orbital electron populations 1.21991 0.94882 1.01346 1.02820 1.20882 0.96404 0.99452 0.91816 0.90703 1.21708 1.02499 1.00285 0.92576 1.20111 0.79452 0.84990 0.82966 1.90589 1.42143 1.25614 1.86048 1.49758 1.54689 1.27687 1.04814 1.24126 0.97456 0.87117 0.96400 1.19503 0.82690 0.87222 0.90874 1.86048 1.30911 1.30972 1.90565 1.21480 1.33377 0.93691 1.08512 0.90917 1.25083 0.94881 0.95578 0.97555 1.69271 1.45189 0.99683 1.39754 0.86265 0.79448 0.78511 0.82219 1.19418 1.20618 1.20657 1.23294 1.00777 0.99166 0.78448 1.21213 0.95036 0.99685 0.94107 1.21624 1.00570 0.99260 0.93755 1.21539 0.95607 1.00723 0.97808 1.21536 0.95850 1.00630 0.97672 1.21542 0.99971 0.99444 0.94714 1.21693 0.95437 1.00819 0.97725 0.93032 0.93516 0.90537 0.89391 0.89328 0.91832 0.90225 0.75025 0.91647 0.89894 0.91706 0.91215 0.92084 0.91622 0.92133 0.92378 0.92474 0.92180 0.92265 0.92068 0.92005 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.58 37.16 0.32 -1.86 16 2 C -0.07 -0.91 1.62 -90.62 -0.15 -1.05 16 3 H 0.07 1.11 7.96 -51.93 -0.41 0.70 16 4 C -0.13 -2.01 4.79 -27.88 -0.13 -2.15 16 5 C 0.53 10.70 7.79 -10.99 -0.09 10.62 16 6 O -0.56 -12.62 14.74 5.55 0.08 -12.54 16 7 N -0.64 -13.46 3.69 -185.35 -0.68 -14.15 16 8 C 0.07 1.54 7.83 -8.63 -0.07 1.47 16 9 C 0.24 5.72 1.57 -91.40 -0.14 5.58 16 10 O -0.57 -14.79 13.53 -35.23 -0.48 -15.27 16 11 C -0.53 -13.25 8.70 -34.44 -0.30 -13.55 16 12 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 13 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 14 N -0.90 -22.54 11.01 55.43 0.61 -21.92 16 15 Si 0.91 19.24 29.54 -169.99 -5.02 14.21 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 C 0.11 2.33 8.03 -8.51 -0.07 2.26 16 20 C -0.08 -0.90 1.78 -90.62 -0.16 -1.06 16 21 C -0.11 -1.13 4.85 -26.73 -0.13 -1.26 16 22 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 23 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 24 C -0.12 -1.07 5.93 -26.71 -0.16 -1.23 16 25 C -0.12 -1.23 4.86 -26.71 -0.13 -1.36 16 26 H 0.05 0.64 6.43 -51.93 -0.33 0.30 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.33 5.95 -51.93 -0.31 1.02 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.23 6.17 -51.93 -0.32 0.91 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.61 8.10 -51.93 -0.42 1.18 16 33 H 0.39 10.24 6.33 45.56 0.29 10.53 16 34 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.70 6.32 -51.93 -0.33 0.37 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -27.16 361.16 -9.30 -36.46 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -7.63 Total: 12.03 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.62 Total: -4.26 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.07 Total: -36.07 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.39 Total: -27.81 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.16 -9.30 -36.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408297382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.875 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds