Wall clock time and date at job start Tue Mar 31 2020 07:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00120 * 2 1 3 5 5 C 1.50700 * 109.46847 * 294.99705 * 4 2 1 6 6 O 1.21284 * 120.00193 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99917 * 179.97438 * 5 4 2 8 8 C 1.47072 * 136.05739 * 359.64107 * 7 5 4 9 9 C 1.53242 * 88.08305 * 207.19765 * 8 7 5 10 10 O 1.42897 * 114.01938 * 87.70910 * 9 8 7 11 11 C 1.50698 * 114.50268 * 220.45909 * 9 8 7 12 12 H 1.07992 * 120.00132 * 93.84974 * 11 9 8 13 13 C 1.37881 * 119.99378 * 273.83986 * 11 9 8 14 14 N 1.31510 * 120.00565 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99406 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47475 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46931 * 120.00146 * 15 13 11 18 18 H 1.48505 * 109.46751 * 239.99771 * 15 13 11 19 19 C 1.47069 * 136.05712 * 180.02562 * 7 5 4 20 20 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 21 21 C 1.53002 * 109.47415 * 59.99902 * 20 2 1 22 22 C 1.53000 * 109.47233 * 180.02562 * 21 20 2 23 23 C 1.52997 * 109.47060 * 299.99657 * 22 21 20 24 24 C 1.52999 * 109.47317 * 59.99960 * 23 22 21 25 25 C 1.52997 * 109.47232 * 179.97438 * 20 2 1 26 26 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 27 27 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 29 29 H 1.08997 * 109.47011 * 55.00008 * 4 2 1 30 30 H 1.08995 * 109.46928 * 174.99938 * 4 2 1 31 31 H 1.09005 * 113.46520 * 321.92794 * 8 7 5 32 32 H 1.08992 * 113.46739 * 92.36655 * 8 7 5 33 33 H 0.96706 * 113.99587 * 86.38484 * 10 9 8 34 34 H 0.96999 * 120.00237 * 180.02562 * 14 13 11 35 35 H 1.09004 * 113.46387 * 267.63068 * 19 7 5 36 36 H 1.08991 * 113.46666 * 38.06812 * 19 7 5 37 37 H 1.09002 * 109.47497 * 299.99550 * 20 2 1 38 38 H 1.08992 * 109.47063 * 59.99950 * 21 20 2 39 39 H 1.09004 * 109.46733 * 299.99664 * 21 20 2 40 40 H 1.09002 * 109.47398 * 59.99826 * 22 21 20 41 41 H 1.09001 * 109.47194 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47853 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 44 44 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 46 46 H 1.09002 * 109.47153 * 299.99992 * 25 20 2 47 47 H 1.09001 * 109.47289 * 60.00075 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0571 2.4765 6 8 1.0111 1.0870 2.3633 7 7 1.9847 -0.3919 3.7001 8 6 2.7106 -1.5528 4.2370 9 6 1.8872 -1.4087 5.5214 10 8 0.6417 -2.1088 5.4955 11 6 2.6675 -1.6278 6.7919 12 1 3.1014 -0.7861 7.3110 13 6 2.8272 -2.9030 7.2915 14 7 2.2990 -3.9280 6.6592 15 14 3.7938 -3.1745 8.8668 16 1 4.2804 -1.8689 9.3803 17 1 2.9164 -3.8094 9.8827 18 1 4.9525 -4.0611 8.5899 19 6 1.7922 0.0601 5.0863 20 6 2.0400 -0.7212 -1.2493 21 6 1.5300 0.0000 -2.4985 22 6 2.0394 -0.7216 -3.7478 23 6 3.5694 -0.7220 -3.7481 24 6 4.0795 -1.4432 -2.4989 25 6 3.5699 -0.7207 -1.2496 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.6055 -1.7198 1.2951 30 1 3.1264 -0.7994 1.2055 31 1 2.5104 -2.4779 3.6963 32 1 3.7754 -1.3702 4.3811 33 1 0.7048 -3.0339 5.7700 34 1 2.4110 -4.8250 7.0109 35 1 2.6098 0.6770 5.4592 36 1 0.8130 0.5035 5.2663 37 1 1.6767 -1.7489 -1.2493 38 1 1.8933 1.0276 -2.4985 39 1 0.4399 0.0000 -2.4985 40 1 1.6758 -1.7491 -3.7476 41 1 1.6765 -0.2075 -4.6378 42 1 3.9325 -1.2357 -4.6383 43 1 3.9331 0.3055 -3.7483 44 1 5.1695 -1.4432 -2.4989 45 1 3.7159 -2.4708 -2.4987 46 1 3.9329 0.3071 -1.2498 47 1 3.9337 -1.2343 -0.3597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408297382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:13 Heat of formation + Delta-G solvation = -101.399267 kcal Electronic energy + Delta-G solvation = -24665.132522 eV Core-core repulsion = 21232.956602 eV Total energy + Delta-G solvation = -3432.175920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40443 -40.15213 -38.96492 -35.92744 -35.57405 -34.12479 -31.84588 -31.15633 -30.08473 -28.59526 -26.91380 -26.72254 -24.19583 -23.23080 -21.99393 -20.87228 -20.61264 -19.85016 -19.21615 -17.94096 -17.25122 -16.83529 -16.68256 -16.02279 -15.93957 -15.64071 -15.03399 -14.98651 -14.79431 -14.50238 -14.32649 -14.20213 -14.04682 -13.67740 -13.41649 -13.26642 -13.13303 -12.79119 -12.75180 -12.66625 -12.33490 -12.23297 -12.13858 -12.05972 -12.01170 -11.91752 -11.57781 -11.34496 -11.24993 -10.95065 -10.76048 -10.69334 -10.57094 -10.21411 -9.53965 -8.27639 -6.44732 1.45788 1.50608 1.60828 1.68398 2.01270 2.40916 2.94369 3.47397 3.71357 3.73894 3.81853 3.94739 4.00385 4.16134 4.19770 4.37303 4.42143 4.46894 4.51018 4.54971 4.61688 4.66880 4.70140 4.72028 4.75696 4.79663 4.82883 4.92395 4.92513 4.95098 5.05433 5.07758 5.21618 5.24475 5.27226 5.31518 5.35679 5.37291 5.43626 5.50081 5.59234 5.67827 5.72981 5.91375 6.61407 6.93512 7.20306 7.29896 7.49014 8.78632 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.003209 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.908624 B = 8724.076994 C = 9309.993107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.061 4.061 3 H 0.061 0.939 4 C -0.122 4.122 5 C 0.526 3.474 6 O -0.590 6.590 7 N -0.640 5.640 8 C 0.088 3.912 9 C 0.218 3.782 10 O -0.587 6.587 11 C -0.552 4.552 12 H 0.073 0.927 13 C 0.032 3.968 14 N -0.917 5.917 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.275 1.275 19 C 0.104 3.896 20 C -0.074 4.074 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.120 4.120 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.389 0.611 34 H 0.277 0.723 35 H 0.101 0.899 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 1.647 -17.220 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.161 4.161 5 C 0.318 3.682 6 O -0.473 6.473 7 N -0.373 5.373 8 C -0.035 4.035 9 C 0.177 3.823 10 O -0.400 6.400 11 C -0.590 4.590 12 H 0.091 0.909 13 C -0.168 4.168 14 N -0.558 5.558 15 Si 0.796 3.204 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.201 1.201 19 C -0.019 4.019 20 C -0.092 4.092 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.157 4.157 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.245 0.755 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.584 2.627 -17.700 18.249 hybrid contribution 0.406 -0.701 1.323 1.551 sum 3.989 1.925 -16.377 16.966 Atomic orbital electron populations 1.21936 0.95439 1.01424 1.01908 1.20853 0.95881 0.98891 0.92340 0.92034 1.21764 1.03730 0.99790 0.90857 1.20998 0.78567 0.84980 0.83616 1.90579 1.43196 1.27061 1.86434 1.49847 1.54955 1.27641 1.04900 1.23911 0.97684 0.87111 0.94819 1.19780 0.82467 0.88047 0.92034 1.86033 1.32452 1.30843 1.90702 1.21683 1.33910 0.94100 1.09289 0.90861 1.25770 0.95631 0.95282 1.00139 1.69326 1.45643 1.00014 1.40789 0.85303 0.78127 0.78323 0.78638 1.19163 1.20829 1.20070 1.23296 1.00639 0.98415 0.79504 1.21137 0.95572 0.99451 0.93080 1.21613 1.00567 0.99125 0.93831 1.21526 0.95786 1.00743 0.97375 1.21541 0.95619 1.00666 0.97806 1.21532 1.00393 0.99347 0.94224 1.21690 0.94776 1.00832 0.98425 0.91226 0.92907 0.94096 0.88811 0.87434 0.91843 0.88831 0.75503 0.91330 0.88158 0.93264 0.90924 0.92415 0.91639 0.91912 0.91392 0.91328 0.92272 0.91616 0.91904 0.92336 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.58 71.98 0.62 -3.58 16 2 C -0.06 -1.60 1.62 -10.79 -0.02 -1.62 16 3 H 0.06 1.80 7.96 -2.39 -0.02 1.78 16 4 C -0.12 -3.63 4.79 29.85 0.14 -3.49 16 5 C 0.53 21.04 7.79 87.66 0.68 21.72 16 6 O -0.59 -26.88 14.74 -3.04 -0.04 -26.92 16 7 N -0.64 -26.99 3.69 -859.20 -3.17 -30.16 16 8 C 0.09 3.68 7.83 83.10 0.65 4.33 16 9 C 0.22 10.47 1.57 -11.30 -0.02 10.46 16 10 O -0.59 -30.87 13.53 -148.98 -2.02 -32.89 16 11 C -0.55 -27.30 8.70 25.60 0.22 -27.08 16 12 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 13 C 0.03 1.56 5.39 84.66 0.46 2.02 16 14 N -0.92 -45.66 11.01 21.45 0.24 -45.43 16 15 Si 0.97 38.81 29.54 68.60 2.03 40.83 16 16 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 19 C 0.10 4.64 8.03 83.18 0.67 5.31 16 20 C -0.07 -1.49 1.78 -10.79 -0.02 -1.51 16 21 C -0.11 -2.02 4.85 30.60 0.15 -1.88 16 22 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 23 C -0.12 -1.69 5.92 30.59 0.18 -1.50 16 24 C -0.12 -1.83 5.93 30.61 0.18 -1.65 16 25 C -0.12 -2.24 4.86 30.61 0.15 -2.09 16 26 H 0.07 1.66 6.43 -2.39 -0.02 1.64 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.44 5.95 -2.39 -0.01 1.43 16 29 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.11 2.81 6.17 -2.39 -0.01 2.79 16 31 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 32 H 0.09 3.65 8.10 -2.39 -0.02 3.63 16 33 H 0.39 20.63 6.33 -74.05 -0.47 20.16 16 34 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 35 H 0.10 4.04 8.10 -2.38 -0.02 4.02 16 36 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.16 6.43 -2.39 -0.02 1.15 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.20 6.32 -2.39 -0.02 1.19 16 Total: -1.00 -57.44 361.16 1.73 -55.70 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: 0.47 Total: 40.96 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 4.23 Total: -2.09 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.94 Total: -75.59 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -2.06 Total: -59.81 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.83 kcal Total: -57.44 1.73 -55.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408297382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.695 kcal (2) G-P(sol) polarization free energy of solvation -57.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds