Wall clock time and date at job start Tue Mar 31 2020 07:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00055 * 2 1 4 4 O 1.20825 * 120.00282 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99730 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47189 * 180.02562 * 5 3 2 7 7 H 1.08998 * 110.43490 * 54.29592 * 6 5 3 8 8 C 1.54895 * 110.48419 * 291.76048 * 6 5 3 9 9 C 1.54894 * 102.74573 * 203.37923 * 8 6 5 10 10 C 1.54266 * 104.19514 * 37.94166 * 9 8 6 11 11 H 1.09001 * 110.02855 * 95.67543 * 10 9 8 12 12 N 1.46897 * 110.02880 * 217.05420 * 10 9 8 13 13 C 1.46901 * 111.00372 * 284.02442 * 12 10 9 14 14 C 1.52997 * 109.47175 * 177.87748 * 13 12 10 15 15 C 1.50700 * 115.54877 * 185.81971 * 14 13 12 16 16 H 1.07998 * 120.00108 * 115.08154 * 15 14 13 17 17 C 1.37886 * 119.99718 * 295.08145 * 15 14 13 18 18 N 1.31516 * 119.99443 * 171.19488 * 17 15 14 19 19 Si 1.86797 * 120.00104 * 351.19329 * 17 15 14 20 20 H 1.48501 * 109.46790 * 92.20261 * 19 17 15 21 21 H 1.48498 * 109.46896 * 212.20173 * 19 17 15 22 22 H 1.48493 * 109.47045 * 332.20262 * 19 17 15 23 23 C 1.52997 * 117.49932 * 40.15242 * 14 13 12 24 24 C 1.52994 * 117.50112 * 331.48997 * 14 13 12 25 25 C 1.54087 * 106.62499 * 336.27975 * 10 9 8 26 26 H 1.08998 * 110.00681 * 119.38338 * 25 10 9 27 27 C 1.52997 * 110.15962 * 240.88242 * 25 10 9 28 28 H 1.08993 * 109.47801 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46839 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46908 * 59.99311 * 1 2 3 31 31 H 1.08998 * 109.47143 * 300.00435 * 5 3 2 32 32 H 1.09002 * 109.47055 * 60.00588 * 5 3 2 33 33 H 1.09005 * 110.75424 * 321.69426 * 8 6 5 34 34 H 1.08994 * 110.75336 * 85.06326 * 8 6 5 35 35 H 1.09000 * 110.48226 * 156.61908 * 9 8 6 36 36 H 1.08999 * 110.48107 * 279.12927 * 9 8 6 37 37 H 1.00900 * 110.99906 * 160.06847 * 12 10 9 38 38 H 1.08997 * 109.47140 * 297.88264 * 13 12 10 39 39 H 1.08999 * 109.46588 * 57.87636 * 13 12 10 40 40 H 0.97001 * 119.99540 * 180.02562 * 18 17 15 41 41 H 1.09002 * 117.50091 * 359.97438 * 23 14 13 42 42 H 1.09002 * 117.49807 * 145.02023 * 23 14 13 43 43 H 1.09001 * 117.50077 * 214.98036 * 24 14 13 44 44 H 1.09000 * 117.49741 * 359.97438 * 24 14 13 45 45 H 1.08997 * 109.47141 * 170.96169 * 27 25 10 46 46 H 1.09001 * 109.47161 * 290.96977 * 27 25 10 47 47 H 1.09005 * 109.47258 * 50.96612 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7419 0.0011 7 1 3.5363 3.2757 0.8305 8 6 3.6387 3.4146 -1.3465 9 6 4.6337 4.5998 -1.4147 10 6 5.9399 4.0316 -0.8224 11 1 6.5931 3.6851 -1.6233 12 7 6.6217 5.0617 -0.0276 13 6 7.2863 6.0427 -0.8959 14 6 7.9390 7.1262 -0.0352 15 6 8.5451 8.2799 -0.7918 16 1 8.1353 9.2730 -0.6814 17 6 9.6230 8.0676 -1.6251 18 7 10.0430 9.0314 -2.4153 19 14 10.4865 6.4112 -1.6317 20 1 9.8846 5.5434 -2.6757 21 1 11.9297 6.6065 -1.9219 22 1 10.3315 5.7670 -0.3027 23 6 8.6363 6.6812 1.2519 24 6 7.3023 7.4286 1.3227 25 6 5.5370 2.8504 0.0813 26 1 5.9958 1.9304 -0.2809 27 6 5.9688 3.1193 1.5242 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.9557 0.7807 0.8908 32 1 3.9564 0.7805 -0.8892 33 1 3.7994 2.7270 -2.1769 34 1 2.6098 3.7742 -1.3349 35 1 4.7868 4.9103 -2.4482 36 1 4.2727 5.4358 -0.8156 37 1 7.2777 4.6461 0.6166 38 1 8.0501 5.5424 -1.4912 39 1 6.5505 6.4989 -1.5582 40 1 10.8011 8.8819 -3.0018 41 1 8.6297 5.6166 1.4857 42 1 9.5332 7.2233 1.5516 43 1 7.3221 8.4619 1.6690 44 1 6.4181 6.8559 1.6027 45 1 5.5415 2.3598 2.1789 46 1 7.0563 3.0860 1.5903 47 1 5.6162 4.1039 1.8315 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430061062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:27 Heat of formation + Delta-G solvation = -68.700247 kcal Electronic energy + Delta-G solvation = -24692.547714 eV Core-core repulsion = 21261.789731 eV Total energy + Delta-G solvation = -3430.757984 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.81821 -39.22656 -37.22155 -36.57537 -33.69603 -32.07938 -31.34380 -30.64049 -28.03442 -26.57015 -25.52476 -24.50824 -23.54087 -21.45261 -21.35428 -20.20255 -19.02041 -18.66626 -17.66619 -16.95419 -16.73360 -16.43505 -15.43427 -15.27468 -15.04340 -14.67000 -14.25514 -13.73603 -13.52637 -13.49284 -13.37373 -12.75048 -12.71434 -12.45507 -12.30909 -12.20582 -11.89426 -11.70360 -11.13925 -11.09103 -11.02629 -10.89680 -10.88005 -10.79944 -10.59004 -10.51397 -10.44007 -10.34730 -10.26692 -10.03778 -9.33341 -8.96736 -8.63096 -8.30229 -7.74441 -6.09774 -4.08961 1.98890 2.45590 3.26604 3.37624 3.44851 4.36726 4.43188 4.47454 4.55835 4.71740 4.77172 4.78592 4.85652 5.01387 5.06737 5.18623 5.22571 5.28618 5.37783 5.46291 5.54998 5.59264 5.64682 5.67862 5.88131 5.95357 6.01506 6.05888 6.11755 6.15080 6.23191 6.28339 6.33050 6.34137 6.43139 6.50726 6.59038 6.67548 6.75630 6.95947 7.33340 7.38405 7.52026 7.56240 7.84022 7.95547 8.56382 8.96017 9.54810 11.02234 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.003222 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.622166 B = 8688.337652 C = 8763.527354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.500 6.500 5 C -0.107 4.107 6 C -0.072 4.072 7 H 0.089 0.911 8 C -0.119 4.119 9 C -0.112 4.112 10 C 0.084 3.916 11 H 0.037 0.963 12 N -0.682 5.682 13 C 0.090 3.910 14 C 0.003 3.997 15 C -0.483 4.483 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.897 5.897 19 Si 0.873 3.127 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.251 1.251 23 C -0.200 4.200 24 C -0.169 4.169 25 C -0.087 4.087 26 H 0.069 0.931 27 C -0.145 4.145 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.337 0.663 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.264 0.736 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.494 -20.242 5.080 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.301 3.699 4 O -0.387 6.387 5 C -0.145 4.145 6 C -0.091 4.091 7 H 0.107 0.893 8 C -0.157 4.157 9 C -0.150 4.150 10 C -0.026 4.026 11 H 0.055 0.945 12 N -0.316 5.316 13 C -0.039 4.039 14 C 0.001 3.999 15 C -0.521 4.521 16 H 0.094 0.906 17 C -0.125 4.125 18 N -0.534 5.534 19 Si 0.701 3.299 20 H -0.209 1.209 21 H -0.221 1.221 22 H -0.174 1.174 23 C -0.238 4.238 24 C -0.206 4.206 25 C -0.106 4.106 26 H 0.087 0.913 27 C -0.203 4.203 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.158 0.842 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.133 -19.499 5.023 25.188 hybrid contribution 1.223 -1.353 -0.541 1.902 sum -13.909 -20.852 4.482 25.463 Atomic orbital electron populations 1.23240 0.76504 1.03531 1.02587 1.86514 1.23381 1.33942 1.84361 1.23949 0.92404 0.81199 0.72306 1.90680 1.67209 1.36167 1.44599 1.21563 0.87013 1.00252 1.05629 1.21889 0.95224 0.92028 0.99964 0.89295 1.22570 1.00032 0.97433 0.95640 1.22390 0.93940 0.98091 1.00610 1.22147 0.95599 0.90942 0.93961 0.94512 1.60985 1.34971 1.16025 1.19651 1.21770 0.95604 0.91908 0.94580 1.19399 0.98371 0.95706 0.86383 1.20374 1.13758 0.93463 1.24499 0.90604 1.24966 0.96789 0.96522 0.94246 1.69929 1.26552 1.33277 1.23686 0.86926 0.78399 0.85086 0.79504 1.20948 1.22121 1.17427 1.22996 0.95980 0.97300 1.07541 1.22729 0.95367 0.99348 1.03169 1.21887 0.94346 0.97828 0.96541 0.91263 1.21807 1.00738 1.02882 0.94867 0.88257 0.91920 0.91913 0.87754 0.87718 0.92246 0.90659 0.92098 0.90030 0.84187 0.96353 0.90826 0.92654 0.91945 0.90301 0.90816 0.89491 0.93321 0.92958 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.37 10.57 -39.25 -0.41 -3.78 16 3 C 0.46 4.73 7.76 36.01 0.28 5.01 16 4 O -0.50 -6.57 14.36 -18.75 -0.27 -6.84 16 5 C -0.11 -0.89 5.17 -27.88 -0.14 -1.03 16 6 C -0.07 -0.76 1.99 -88.96 -0.18 -0.94 16 7 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16 8 C -0.12 -1.39 5.69 -24.73 -0.14 -1.53 16 9 C -0.11 -1.56 5.86 -25.07 -0.15 -1.70 16 10 C 0.08 1.19 3.21 -66.48 -0.21 0.98 16 11 H 0.04 0.56 8.03 -51.93 -0.42 0.14 16 12 N -0.68 -11.36 3.88 -105.43 -0.41 -11.77 16 13 C 0.09 1.87 5.30 -3.83 -0.02 1.85 16 14 C 0.00 0.06 1.38 -155.67 -0.22 -0.15 16 15 C -0.48 -13.56 9.38 -34.44 -0.32 -13.88 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 17 C 0.08 2.21 5.46 -17.82 -0.10 2.11 16 18 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 19 Si 0.87 21.48 25.11 -169.99 -4.27 17.22 16 20 H -0.28 -6.88 6.99 56.52 0.40 -6.48 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.25 -5.80 5.69 56.52 0.32 -5.48 16 23 C -0.20 -4.23 7.59 -26.70 -0.20 -4.43 16 24 C -0.17 -3.50 9.61 -26.70 -0.26 -3.75 16 25 C -0.09 -0.96 3.08 -89.39 -0.28 -1.24 16 26 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 27 C -0.15 -1.59 7.79 37.16 0.29 -1.30 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.73 8.06 -51.93 -0.42 0.31 16 33 H 0.06 0.63 8.00 -51.93 -0.42 0.22 16 34 H 0.07 0.96 7.17 -51.93 -0.37 0.59 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 37 H 0.34 5.44 4.48 -39.29 -0.18 5.27 16 38 H 0.02 0.41 5.24 -51.93 -0.27 0.14 16 39 H 0.07 1.59 7.64 -51.93 -0.40 1.20 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 41 H 0.06 1.18 6.61 -51.93 -0.34 0.84 16 42 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 43 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.09 1.65 7.39 -51.93 -0.38 1.27 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.58 7.20 -51.93 -0.37 0.21 16 47 H 0.08 1.00 7.37 -51.93 -0.38 0.62 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -31.14 359.72 -7.94 -39.09 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.20 Total: 5.96 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -0.58 Total: -18.73 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.36 Total: -38.34 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.68 Total: -10.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.27 Total: 17.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.14 -7.94 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430061062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.611 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds