Wall clock time and date at job start Tue Mar 31 2020 07:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00055 * 2 1 4 4 O 1.20825 * 120.00282 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99730 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47189 * 180.02562 * 5 3 2 7 7 H 1.08998 * 110.43490 * 54.29592 * 6 5 3 8 8 C 1.54895 * 110.48419 * 291.76048 * 6 5 3 9 9 C 1.54894 * 102.74573 * 203.37923 * 8 6 5 10 10 C 1.54266 * 104.19514 * 37.94166 * 9 8 6 11 11 H 1.09001 * 110.02855 * 95.67543 * 10 9 8 12 12 N 1.46897 * 110.02880 * 217.05420 * 10 9 8 13 13 C 1.46901 * 111.00372 * 284.02442 * 12 10 9 14 14 C 1.52997 * 109.47175 * 177.87748 * 13 12 10 15 15 C 1.50700 * 115.54877 * 185.81971 * 14 13 12 16 16 H 1.07998 * 120.00108 * 115.08154 * 15 14 13 17 17 C 1.37886 * 119.99718 * 295.08145 * 15 14 13 18 18 N 1.31516 * 119.99443 * 171.19488 * 17 15 14 19 19 Si 1.86797 * 120.00104 * 351.19329 * 17 15 14 20 20 H 1.48501 * 109.46790 * 92.20261 * 19 17 15 21 21 H 1.48498 * 109.46896 * 212.20173 * 19 17 15 22 22 H 1.48493 * 109.47045 * 332.20262 * 19 17 15 23 23 C 1.52997 * 117.49932 * 40.15242 * 14 13 12 24 24 C 1.52994 * 117.50112 * 331.48997 * 14 13 12 25 25 C 1.54087 * 106.62499 * 336.27975 * 10 9 8 26 26 H 1.08998 * 110.00681 * 119.38338 * 25 10 9 27 27 C 1.52997 * 110.15962 * 240.88242 * 25 10 9 28 28 H 1.08993 * 109.47801 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46839 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46908 * 59.99311 * 1 2 3 31 31 H 1.08998 * 109.47143 * 300.00435 * 5 3 2 32 32 H 1.09002 * 109.47055 * 60.00588 * 5 3 2 33 33 H 1.09005 * 110.75424 * 321.69426 * 8 6 5 34 34 H 1.08994 * 110.75336 * 85.06326 * 8 6 5 35 35 H 1.09000 * 110.48226 * 156.61908 * 9 8 6 36 36 H 1.08999 * 110.48107 * 279.12927 * 9 8 6 37 37 H 1.00900 * 110.99906 * 160.06847 * 12 10 9 38 38 H 1.08997 * 109.47140 * 297.88264 * 13 12 10 39 39 H 1.08999 * 109.46588 * 57.87636 * 13 12 10 40 40 H 0.97001 * 119.99540 * 180.02562 * 18 17 15 41 41 H 1.09002 * 117.50091 * 359.97438 * 23 14 13 42 42 H 1.09002 * 117.49807 * 145.02023 * 23 14 13 43 43 H 1.09001 * 117.50077 * 214.98036 * 24 14 13 44 44 H 1.09000 * 117.49741 * 359.97438 * 24 14 13 45 45 H 1.08997 * 109.47141 * 170.96169 * 27 25 10 46 46 H 1.09001 * 109.47161 * 290.96977 * 27 25 10 47 47 H 1.09005 * 109.47258 * 50.96612 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7419 0.0011 7 1 3.5363 3.2757 0.8305 8 6 3.6387 3.4146 -1.3465 9 6 4.6337 4.5998 -1.4147 10 6 5.9399 4.0316 -0.8224 11 1 6.5931 3.6851 -1.6233 12 7 6.6217 5.0617 -0.0276 13 6 7.2863 6.0427 -0.8959 14 6 7.9390 7.1262 -0.0352 15 6 8.5451 8.2799 -0.7918 16 1 8.1353 9.2730 -0.6814 17 6 9.6230 8.0676 -1.6251 18 7 10.0430 9.0314 -2.4153 19 14 10.4865 6.4112 -1.6317 20 1 9.8846 5.5434 -2.6757 21 1 11.9297 6.6065 -1.9219 22 1 10.3315 5.7670 -0.3027 23 6 8.6363 6.6812 1.2519 24 6 7.3023 7.4286 1.3227 25 6 5.5370 2.8504 0.0813 26 1 5.9958 1.9304 -0.2809 27 6 5.9688 3.1193 1.5242 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.9557 0.7807 0.8908 32 1 3.9564 0.7805 -0.8892 33 1 3.7994 2.7270 -2.1769 34 1 2.6098 3.7742 -1.3349 35 1 4.7868 4.9103 -2.4482 36 1 4.2727 5.4358 -0.8156 37 1 7.2777 4.6461 0.6166 38 1 8.0501 5.5424 -1.4912 39 1 6.5505 6.4989 -1.5582 40 1 10.8011 8.8819 -3.0018 41 1 8.6297 5.6166 1.4857 42 1 9.5332 7.2233 1.5516 43 1 7.3221 8.4619 1.6690 44 1 6.4181 6.8559 1.6027 45 1 5.5415 2.3598 2.1789 46 1 7.0563 3.0860 1.5903 47 1 5.6162 4.1039 1.8315 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430061062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:27 Heat of formation + Delta-G solvation = -86.832887 kcal Electronic energy + Delta-G solvation = -24693.334005 eV Core-core repulsion = 21261.789731 eV Total energy + Delta-G solvation = -3431.544274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59020 -40.30496 -38.72140 -37.44009 -34.98738 -34.17951 -32.29137 -31.61502 -28.81575 -28.30656 -26.79149 -25.35073 -25.08872 -23.09638 -22.25215 -21.10876 -20.58814 -19.98950 -18.56220 -18.29561 -17.63828 -17.44250 -16.89808 -16.69765 -16.36741 -15.84548 -15.12782 -15.08603 -14.84887 -14.67394 -14.47485 -14.29888 -14.03018 -13.70082 -13.22263 -13.15781 -13.01426 -12.79151 -12.75177 -12.62258 -12.22818 -12.06618 -11.95853 -11.86319 -11.76788 -11.72449 -11.59268 -11.54728 -11.43157 -11.27273 -11.11865 -10.92477 -10.56684 -10.16014 -9.17332 -8.31124 -6.35379 1.25100 1.30822 1.37154 1.50981 1.83024 2.36176 2.96713 3.28313 3.50701 3.56865 3.62116 3.81571 4.01481 4.27070 4.31668 4.32551 4.35629 4.37627 4.43255 4.50240 4.52421 4.55300 4.63815 4.66560 4.70497 4.76692 4.78216 4.79683 4.90572 4.95177 5.03395 5.08584 5.15505 5.23660 5.26437 5.30300 5.37080 5.48978 5.52036 5.61123 5.65578 5.67302 5.72368 6.19128 6.36355 6.60612 6.76159 6.79883 7.31989 8.84834 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.003222 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.622166 B = 8688.337652 C = 8763.527354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.458 3.542 4 O -0.537 6.537 5 C -0.102 4.102 6 C -0.065 4.065 7 H 0.072 0.928 8 C -0.112 4.112 9 C -0.114 4.114 10 C 0.079 3.921 11 H 0.034 0.966 12 N -0.674 5.674 13 C 0.105 3.895 14 C -0.025 4.025 15 C -0.491 4.491 16 H 0.026 0.974 17 C 0.020 3.980 18 N -0.949 5.949 19 Si 0.939 3.061 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.222 1.222 23 C -0.183 4.183 24 C -0.155 4.155 25 C -0.077 4.077 26 H 0.096 0.904 27 C -0.146 4.146 28 H 0.129 0.871 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.344 0.656 38 H 0.008 0.992 39 H 0.053 0.947 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 -24.663 6.470 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.427 6.427 5 C -0.139 4.139 6 C -0.084 4.084 7 H 0.091 0.909 8 C -0.150 4.150 9 C -0.152 4.152 10 C -0.031 4.031 11 H 0.052 0.948 12 N -0.309 5.309 13 C -0.024 4.024 14 C -0.027 4.027 15 C -0.529 4.529 16 H 0.044 0.956 17 C -0.178 4.178 18 N -0.589 5.589 19 Si 0.764 3.236 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.144 1.144 23 C -0.220 4.220 24 C -0.192 4.192 25 C -0.096 4.096 26 H 0.114 0.886 27 C -0.203 4.203 28 H 0.147 0.853 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.167 0.833 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.206 -23.947 6.443 29.089 hybrid contribution 1.105 0.136 -0.973 1.479 sum -14.102 -23.810 5.470 28.208 Atomic orbital electron populations 1.23479 0.75331 1.05442 1.02240 1.86507 1.24605 1.33300 1.83925 1.24377 0.93226 0.80923 0.71197 1.90678 1.68159 1.37351 1.46468 1.21591 0.85592 0.98697 1.07972 1.21755 0.94856 0.93502 0.98304 0.90919 1.22497 0.98387 0.96806 0.97269 1.22355 0.94873 0.98460 0.99556 1.22282 0.94946 0.91442 0.94459 0.94823 1.60886 1.34371 1.16451 1.19197 1.21369 0.94783 0.92110 0.94170 1.19291 1.00549 0.95578 0.87243 1.20587 1.13887 0.93310 1.25149 0.95601 1.25853 0.97513 1.00695 0.93725 1.70084 1.27551 1.36032 1.25187 0.85877 0.76515 0.80232 0.80988 1.20136 1.22467 1.14443 1.22991 0.95455 0.99068 1.04505 1.22726 0.96364 0.99197 1.00886 1.21848 0.94490 0.97153 0.96086 0.88614 1.21794 1.00978 1.02631 0.94902 0.85251 0.92251 0.92364 0.85092 0.85472 0.90725 0.92178 0.93182 0.92169 0.83325 0.97381 0.92838 0.92585 0.88601 0.91416 0.92017 0.87243 0.91007 0.92666 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.37 -5.82 10.57 -51.40 -0.54 -6.36 16 3 C 0.46 8.38 7.76 71.24 0.55 8.93 16 4 O -0.54 -13.60 14.36 21.97 0.32 -13.28 16 5 C -0.10 -1.29 5.17 29.85 0.15 -1.13 16 6 C -0.07 -1.19 1.99 -9.72 -0.02 -1.21 16 7 H 0.07 1.60 7.67 -2.39 -0.02 1.58 16 8 C -0.11 -2.46 5.69 31.89 0.18 -2.28 16 9 C -0.11 -3.12 5.86 31.67 0.19 -2.93 16 10 C 0.08 2.05 3.21 45.71 0.15 2.20 16 11 H 0.03 0.93 8.03 -2.39 -0.02 0.91 16 12 N -0.67 -21.00 3.88 -487.47 -1.89 -22.89 16 13 C 0.10 4.29 5.30 86.30 0.46 4.74 16 14 C -0.03 -1.17 1.38 -52.93 -0.07 -1.24 16 15 C -0.49 -28.60 9.38 25.60 0.24 -28.36 16 16 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 17 C 0.02 1.15 5.46 84.66 0.46 1.61 16 18 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 19 Si 0.94 44.24 25.11 68.60 1.72 45.96 16 20 H -0.28 -12.58 6.99 99.48 0.70 -11.88 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 22 H -0.22 -9.31 5.69 99.48 0.57 -8.75 16 23 C -0.18 -7.25 7.59 30.62 0.23 -7.02 16 24 C -0.15 -6.24 9.61 30.62 0.29 -5.94 16 25 C -0.08 -1.41 3.08 -10.00 -0.03 -1.44 16 26 H 0.10 1.33 7.84 -2.39 -0.02 1.31 16 27 C -0.15 -2.59 7.79 71.98 0.56 -2.02 16 28 H 0.13 0.66 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.13 1.12 8.06 -2.39 -0.02 1.10 16 33 H 0.07 1.41 8.00 -2.38 -0.02 1.39 16 34 H 0.06 1.52 7.17 -2.39 -0.02 1.50 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.88 8.06 -2.39 -0.02 1.86 16 37 H 0.34 9.84 4.48 -89.69 -0.40 9.43 16 38 H 0.01 0.35 5.24 -2.39 -0.01 0.34 16 39 H 0.05 2.36 7.64 -2.39 -0.02 2.34 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.10 3.19 6.61 -2.39 -0.02 3.17 16 42 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.11 3.92 7.39 -2.39 -0.02 3.91 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 0.96 7.20 -2.39 -0.02 0.94 16 47 H 0.06 1.32 7.37 -2.38 -0.02 1.30 16 Total: -1.00 -71.19 359.72 4.83 -66.35 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.39 Total: 24.62 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 4.54 Total: -34.57 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.59 Total: -82.73 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.23 Total: -19.64 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.72 Total: 45.96 kcal Total: -71.19 4.83 -66.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430061062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.480 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds