Wall clock time and date at job start Tue Mar 31 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47377 * 2 1 4 4 C 1.42894 * 114.00250 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47372 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47321 * 185.07331 * 5 4 3 7 7 C 1.50699 * 112.85094 * 302.40499 * 6 5 4 8 8 O 1.21286 * 120.00254 * 123.98311 * 7 6 5 9 9 N 1.34785 * 120.00144 * 303.98562 * 7 6 5 10 10 C 1.46497 * 120.00090 * 174.82590 * 9 7 6 11 11 C 1.53002 * 109.46981 * 185.04665 * 10 9 7 12 12 C 1.50690 * 115.56386 * 275.39650 * 11 10 9 13 13 H 1.08009 * 120.00022 * 139.80359 * 12 11 10 14 14 C 1.37874 * 120.00088 * 319.80031 * 12 11 10 15 15 N 1.31520 * 120.00237 * 166.36866 * 14 12 11 16 16 Si 1.86799 * 120.00054 * 346.36603 * 14 12 11 17 17 H 1.48502 * 109.47249 * 95.55927 * 16 14 12 18 18 H 1.48498 * 109.47264 * 215.55679 * 16 14 12 19 19 H 1.48497 * 109.47078 * 335.55841 * 16 14 12 20 20 C 1.53002 * 117.49273 * 61.08528 * 11 10 9 21 21 C 1.53003 * 60.03404 * 107.47510 * 20 11 10 22 22 C 1.53776 * 113.61601 * 73.60210 * 6 5 4 23 23 C 1.53950 * 87.02348 * 89.23037 * 22 6 5 24 24 C 1.53786 * 113.61698 * 171.21159 * 6 5 4 25 25 H 1.08999 * 109.47004 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47355 * 300.00064 * 1 2 3 27 27 H 1.09002 * 109.47369 * 59.99915 * 1 2 3 28 28 H 1.09002 * 109.46864 * 240.00078 * 2 1 3 29 29 H 1.08994 * 109.47061 * 120.00279 * 2 1 3 30 30 H 1.08995 * 109.47392 * 60.00295 * 4 3 2 31 31 H 1.09001 * 109.47091 * 300.00071 * 4 3 2 32 32 H 1.08999 * 109.47306 * 65.07245 * 5 4 3 33 33 H 1.09000 * 109.46830 * 305.07130 * 5 4 3 34 34 H 0.97001 * 119.99352 * 354.82666 * 9 7 6 35 35 H 1.09007 * 109.46898 * 65.05386 * 10 9 7 36 36 H 1.08999 * 109.47481 * 305.05502 * 10 9 7 37 37 H 0.96995 * 120.00599 * 180.02562 * 15 14 12 38 38 H 1.09001 * 117.49709 * 214.97408 * 20 11 10 39 39 H 1.08997 * 117.50396 * 359.97438 * 20 11 10 40 40 H 1.08998 * 117.49748 * 107.49222 * 21 20 11 41 41 H 1.08998 * 117.49976 * 252.52464 * 21 20 11 42 42 H 1.09001 * 113.61680 * 203.75159 * 22 6 5 43 43 H 1.08997 * 113.61626 * 334.65130 * 22 6 5 44 44 H 1.08998 * 113.53640 * 270.81573 * 23 22 6 45 45 H 1.08996 * 113.66875 * 139.92836 * 23 22 6 46 46 H 1.08998 * 113.61051 * 25.34577 * 24 6 5 47 47 H 1.08997 * 113.61465 * 156.25153 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3451 3.0606 -0.1281 7 6 6.0849 2.3384 0.9683 8 8 6.9110 1.4953 0.6892 9 7 5.8285 2.6291 2.2592 10 6 6.4628 1.8501 3.3255 11 6 5.9111 2.2970 4.6808 12 6 6.5830 3.4995 5.2919 13 1 5.9921 4.2512 5.7942 14 6 7.9521 3.6401 5.2098 15 7 8.5129 4.7949 5.4955 16 14 9.0106 2.1903 4.6930 17 1 9.2826 2.2707 3.2353 18 1 10.2945 2.2241 5.4386 19 1 8.2964 0.9237 4.9942 20 6 4.4100 2.1272 4.9232 21 6 5.4073 1.2087 5.6322 22 6 5.8718 2.7451 -1.5379 23 6 5.6733 4.2377 -1.8589 24 6 5.8304 4.5026 -0.3522 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8333 0.9767 -0.8908 31 1 3.8340 0.9763 0.8892 32 1 3.5011 3.4005 0.9324 33 1 3.3482 3.4421 -0.8405 34 1 5.2240 3.3542 2.4821 35 1 7.5406 2.0110 3.3010 36 1 6.2501 0.7913 3.1777 37 1 9.4760 4.8940 5.4374 38 1 3.9084 2.8853 5.5247 39 1 3.8154 1.6976 4.1170 40 1 5.5619 1.3627 6.7002 41 1 5.4692 0.1750 5.2922 42 1 6.9151 2.4301 -1.5540 43 1 5.2203 2.0843 -2.1097 44 1 4.6802 4.4721 -2.2422 45 1 6.4732 4.6655 -2.4631 46 1 5.1454 5.2584 0.0320 47 1 6.8624 4.6689 -0.0434 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431147587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:07 Heat of formation + Delta-G solvation = -46.793582 kcal Electronic energy + Delta-G solvation = -25191.851689 eV Core-core repulsion = 21762.043649 eV Total energy + Delta-G solvation = -3429.808040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57891 -38.17653 -37.76023 -36.71780 -33.47354 -32.35809 -32.27813 -30.30035 -27.55222 -25.97011 -25.55022 -24.56517 -22.91047 -22.69008 -21.63392 -20.52122 -19.40972 -18.30249 -17.22387 -16.77634 -16.39973 -16.20110 -15.67268 -15.29884 -15.09167 -14.63591 -14.35146 -14.04482 -13.87788 -13.34328 -13.03695 -12.87976 -12.68582 -12.47794 -12.37975 -12.15319 -12.11223 -11.99071 -11.49257 -11.27288 -11.10559 -11.02022 -10.98307 -10.65475 -10.48779 -10.48469 -10.27875 -10.19917 -9.67276 -9.65986 -9.35235 -9.19127 -8.96330 -8.45636 -8.24629 -6.23906 -4.18742 3.01913 3.26106 3.37036 3.40705 3.45553 3.68643 4.32535 4.42152 4.56991 4.71900 4.76877 4.81621 4.87183 4.99016 5.07257 5.14756 5.19781 5.28185 5.32537 5.39506 5.45295 5.60753 5.62935 5.66118 5.72163 5.82318 5.83472 5.89833 5.90456 5.91212 5.98578 6.05656 6.11260 6.16040 6.19212 6.41099 6.42332 6.48899 6.66884 6.87898 7.01876 7.09822 7.11359 7.63914 8.09948 8.38619 8.70163 8.81010 9.40930 10.87284 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.005340 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.561555 B = 5241.903784 C = 6486.572132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.062 3.938 5 C -0.088 4.088 6 C -0.105 4.105 7 C 0.519 3.481 8 O -0.553 6.553 9 N -0.702 5.702 10 C 0.146 3.854 11 C -0.007 4.007 12 C -0.489 4.489 13 H 0.079 0.921 14 C 0.082 3.918 15 N -0.884 5.884 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.295 1.295 19 H -0.260 1.260 20 C -0.184 4.184 21 C -0.198 4.198 22 C -0.114 4.114 23 C -0.140 4.140 24 C -0.120 4.120 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 -4.879 -13.520 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.126 4.126 6 C -0.109 4.109 7 C 0.305 3.695 8 O -0.432 6.432 9 N -0.351 5.351 10 C 0.023 3.977 11 C -0.009 4.009 12 C -0.526 4.526 13 H 0.097 0.903 14 C -0.122 4.122 15 N -0.520 5.520 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.223 1.223 19 H -0.184 1.184 20 C -0.222 4.222 21 C -0.237 4.237 22 C -0.151 4.151 23 C -0.178 4.178 24 C -0.158 4.158 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.240 0.760 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.091 -5.220 -13.659 18.353 hybrid contribution 0.631 -0.711 0.059 0.953 sum -10.460 -5.931 -13.600 18.153 Atomic orbital electron populations 1.21736 0.93777 1.02122 1.03096 1.22438 0.95478 0.83955 1.00120 1.87832 1.21195 1.26339 1.95490 1.22473 0.80899 0.97350 1.00687 1.21217 0.91605 0.95566 1.04166 1.22084 0.95136 0.98392 0.95264 1.20312 0.82731 0.82886 0.83600 1.90650 1.34574 1.34617 1.83363 1.45949 1.47906 1.36282 1.04974 1.21333 0.97141 0.93152 0.86035 1.19574 0.92950 0.96826 0.91504 1.20280 0.91896 1.03848 1.36537 0.90275 1.24949 0.97941 0.95147 0.94188 1.69921 1.11392 1.22833 1.47854 0.87007 0.79776 0.84509 0.78010 1.20289 1.22267 1.18433 1.22750 0.93146 1.03302 1.02981 1.23149 1.06653 0.94595 0.99276 1.22888 1.02562 0.96520 0.93151 1.22874 1.02059 0.96532 0.96306 1.22911 1.02517 0.93867 0.96480 0.91232 0.91743 0.91966 0.93597 0.93361 0.93112 0.93116 0.90076 0.89847 0.76032 0.92077 0.93145 0.92340 0.89674 0.90909 0.89316 0.91310 0.88802 0.91184 0.89930 0.91088 0.90248 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.60 6.66 37.16 0.25 0.84 16 3 O -0.39 -5.01 10.34 -35.23 -0.36 -5.37 16 4 C 0.06 0.80 5.56 37.16 0.21 1.01 16 5 C -0.09 -1.06 4.85 -26.73 -0.13 -1.19 16 6 C -0.11 -1.44 0.80 -154.85 -0.12 -1.57 16 7 C 0.52 9.53 5.81 -10.98 -0.06 9.47 16 8 O -0.55 -12.13 15.98 5.55 0.09 -12.04 16 9 N -0.70 -13.45 5.37 -60.29 -0.32 -13.77 16 10 C 0.15 3.23 4.68 -4.04 -0.02 3.22 16 11 C -0.01 -0.16 1.13 -155.62 -0.18 -0.34 16 12 C -0.49 -13.06 9.53 -34.45 -0.33 -13.39 16 13 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 14 C 0.08 2.29 5.41 -17.82 -0.10 2.19 16 15 N -0.88 -26.09 13.96 55.43 0.77 -25.32 16 16 Si 0.88 22.13 24.42 -169.99 -4.15 17.98 16 17 H -0.28 -7.14 6.76 56.52 0.38 -6.75 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.26 -6.31 6.90 56.52 0.39 -5.92 16 20 C -0.18 -3.54 9.77 -26.73 -0.26 -3.80 16 21 C -0.20 -4.05 9.89 -26.69 -0.26 -4.32 16 22 C -0.11 -1.41 6.79 -25.83 -0.18 -1.59 16 23 C -0.14 -1.45 7.74 -25.83 -0.20 -1.65 16 24 C -0.12 -1.49 7.22 -25.91 -0.19 -1.68 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.63 7.18 -51.93 -0.37 0.25 16 31 H 0.05 0.74 7.53 -51.93 -0.39 0.35 16 32 H 0.08 0.98 7.83 -51.93 -0.41 0.57 16 33 H 0.08 0.88 7.31 -51.93 -0.38 0.50 16 34 H 0.40 7.14 8.07 -40.82 -0.33 6.81 16 35 H 0.06 1.53 2.62 -51.93 -0.14 1.39 16 36 H 0.05 1.08 7.91 -51.93 -0.41 0.67 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 41 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 42 H 0.09 1.34 7.54 -51.93 -0.39 0.95 16 43 H 0.07 0.78 7.27 -51.93 -0.38 0.41 16 44 H 0.08 0.73 7.60 -51.93 -0.39 0.33 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 47 H 0.09 1.26 8.09 -51.93 -0.42 0.83 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -31.06 371.70 -7.81 -38.86 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.24 Total: 7.75 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.19 Total: -13.69 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.45 Total: -39.09 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.28 Total: -17.41 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.15 Total: 17.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.06 -7.81 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431147587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.931 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds