Wall clock time and date at job start Tue Mar 31 2020 07:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47377 * 2 1 4 4 C 1.42894 * 114.00250 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47372 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47321 * 185.07331 * 5 4 3 7 7 C 1.50699 * 112.85094 * 302.40499 * 6 5 4 8 8 O 1.21286 * 120.00254 * 123.98311 * 7 6 5 9 9 N 1.34785 * 120.00144 * 303.98562 * 7 6 5 10 10 C 1.46497 * 120.00090 * 174.82590 * 9 7 6 11 11 C 1.53002 * 109.46981 * 185.04665 * 10 9 7 12 12 C 1.50690 * 115.56386 * 275.39650 * 11 10 9 13 13 H 1.08009 * 120.00022 * 139.80359 * 12 11 10 14 14 C 1.37874 * 120.00088 * 319.80031 * 12 11 10 15 15 N 1.31520 * 120.00237 * 166.36866 * 14 12 11 16 16 Si 1.86799 * 120.00054 * 346.36603 * 14 12 11 17 17 H 1.48502 * 109.47249 * 95.55927 * 16 14 12 18 18 H 1.48498 * 109.47264 * 215.55679 * 16 14 12 19 19 H 1.48497 * 109.47078 * 335.55841 * 16 14 12 20 20 C 1.53002 * 117.49273 * 61.08528 * 11 10 9 21 21 C 1.53003 * 60.03404 * 107.47510 * 20 11 10 22 22 C 1.53776 * 113.61601 * 73.60210 * 6 5 4 23 23 C 1.53950 * 87.02348 * 89.23037 * 22 6 5 24 24 C 1.53786 * 113.61698 * 171.21159 * 6 5 4 25 25 H 1.08999 * 109.47004 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47355 * 300.00064 * 1 2 3 27 27 H 1.09002 * 109.47369 * 59.99915 * 1 2 3 28 28 H 1.09002 * 109.46864 * 240.00078 * 2 1 3 29 29 H 1.08994 * 109.47061 * 120.00279 * 2 1 3 30 30 H 1.08995 * 109.47392 * 60.00295 * 4 3 2 31 31 H 1.09001 * 109.47091 * 300.00071 * 4 3 2 32 32 H 1.08999 * 109.47306 * 65.07245 * 5 4 3 33 33 H 1.09000 * 109.46830 * 305.07130 * 5 4 3 34 34 H 0.97001 * 119.99352 * 354.82666 * 9 7 6 35 35 H 1.09007 * 109.46898 * 65.05386 * 10 9 7 36 36 H 1.08999 * 109.47481 * 305.05502 * 10 9 7 37 37 H 0.96995 * 120.00599 * 180.02562 * 15 14 12 38 38 H 1.09001 * 117.49709 * 214.97408 * 20 11 10 39 39 H 1.08997 * 117.50396 * 359.97438 * 20 11 10 40 40 H 1.08998 * 117.49748 * 107.49222 * 21 20 11 41 41 H 1.08998 * 117.49976 * 252.52464 * 21 20 11 42 42 H 1.09001 * 113.61680 * 203.75159 * 22 6 5 43 43 H 1.08997 * 113.61626 * 334.65130 * 22 6 5 44 44 H 1.08998 * 113.53640 * 270.81573 * 23 22 6 45 45 H 1.08996 * 113.66875 * 139.92836 * 23 22 6 46 46 H 1.08998 * 113.61051 * 25.34577 * 24 6 5 47 47 H 1.08997 * 113.61465 * 156.25153 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3451 3.0606 -0.1281 7 6 6.0849 2.3384 0.9683 8 8 6.9110 1.4953 0.6892 9 7 5.8285 2.6291 2.2592 10 6 6.4628 1.8501 3.3255 11 6 5.9111 2.2970 4.6808 12 6 6.5830 3.4995 5.2919 13 1 5.9921 4.2512 5.7942 14 6 7.9521 3.6401 5.2098 15 7 8.5129 4.7949 5.4955 16 14 9.0106 2.1903 4.6930 17 1 9.2826 2.2707 3.2353 18 1 10.2945 2.2241 5.4386 19 1 8.2964 0.9237 4.9942 20 6 4.4100 2.1272 4.9232 21 6 5.4073 1.2087 5.6322 22 6 5.8718 2.7451 -1.5379 23 6 5.6733 4.2377 -1.8589 24 6 5.8304 4.5026 -0.3522 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8333 0.9767 -0.8908 31 1 3.8340 0.9763 0.8892 32 1 3.5011 3.4005 0.9324 33 1 3.3482 3.4421 -0.8405 34 1 5.2240 3.3542 2.4821 35 1 7.5406 2.0110 3.3010 36 1 6.2501 0.7913 3.1777 37 1 9.4760 4.8940 5.4374 38 1 3.9084 2.8853 5.5247 39 1 3.8154 1.6976 4.1170 40 1 5.5619 1.3627 6.7002 41 1 5.4692 0.1750 5.2922 42 1 6.9151 2.4301 -1.5540 43 1 5.2203 2.0843 -2.1097 44 1 4.6802 4.4721 -2.2422 45 1 6.4732 4.6655 -2.4631 46 1 5.1454 5.2584 0.0320 47 1 6.8624 4.6689 -0.0434 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431147587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:06 Heat of formation + Delta-G solvation = -66.870708 kcal Electronic energy + Delta-G solvation = -25192.722298 eV Core-core repulsion = 21762.043649 eV Total energy + Delta-G solvation = -3430.678649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81446 -39.51666 -38.86486 -38.23588 -35.05289 -34.38640 -33.23612 -31.17929 -29.16515 -27.60856 -26.60998 -26.01299 -23.75679 -23.65295 -23.19915 -21.83181 -21.22169 -19.69547 -18.63740 -17.91780 -17.72038 -17.48740 -17.24979 -16.82951 -16.15794 -15.94360 -15.60514 -15.44119 -15.06659 -14.88446 -14.79508 -14.33175 -13.95202 -13.74516 -13.57041 -13.30042 -13.13824 -13.00913 -12.91603 -12.53348 -12.36497 -12.21579 -12.19208 -12.07907 -12.00062 -11.96690 -11.56340 -11.43405 -11.28484 -11.20670 -10.79284 -10.70731 -10.58319 -10.33535 -9.94988 -8.40843 -6.35383 1.22850 1.29977 1.37138 1.59024 2.19707 2.23495 2.58085 2.83842 3.37741 3.42319 3.56486 3.77285 3.85274 3.88864 3.96458 4.08052 4.16158 4.17523 4.19634 4.36180 4.40231 4.41718 4.44388 4.48536 4.58467 4.73910 4.75268 4.80250 4.86951 4.87866 4.92598 4.99115 5.00395 5.03941 5.07160 5.14014 5.20364 5.22003 5.27867 5.42205 5.48594 5.53220 5.62577 6.20071 6.24163 6.58359 6.68223 7.23026 7.25972 8.74249 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.005340 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.561555 B = 5241.903784 C = 6486.572132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.399 6.399 4 C 0.065 3.935 5 C -0.081 4.081 6 C -0.102 4.102 7 C 0.515 3.485 8 O -0.593 6.593 9 N -0.701 5.701 10 C 0.151 3.849 11 C -0.037 4.037 12 C -0.479 4.479 13 H 0.049 0.951 14 C 0.037 3.963 15 N -0.930 5.930 16 Si 0.929 3.071 17 H -0.293 1.293 18 H -0.296 1.296 19 H -0.244 1.244 20 C -0.154 4.154 21 C -0.190 4.190 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.125 4.125 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.412 0.588 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 -5.745 -15.104 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.319 6.319 4 C -0.011 4.011 5 C -0.118 4.118 6 C -0.105 4.105 7 C 0.303 3.697 8 O -0.475 6.475 9 N -0.351 5.351 10 C 0.027 3.973 11 C -0.038 4.038 12 C -0.516 4.516 13 H 0.067 0.933 14 C -0.162 4.162 15 N -0.568 5.568 16 Si 0.759 3.241 17 H -0.221 1.221 18 H -0.224 1.224 19 H -0.167 1.167 20 C -0.191 4.191 21 C -0.229 4.229 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.163 4.163 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.248 0.752 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.128 0.872 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.551 -6.093 -15.235 21.280 hybrid contribution 1.311 -0.458 0.567 1.500 sum -12.240 -6.551 -14.668 20.196 Atomic orbital electron populations 1.21744 0.92231 1.03396 1.02962 1.22663 0.96783 0.83055 1.00410 1.87817 1.20843 1.27748 1.95505 1.22403 0.81163 0.97715 0.99855 1.21203 0.89970 0.95332 1.05318 1.22205 0.95892 0.98621 0.93811 1.21206 0.82177 0.82265 0.84019 1.90623 1.36440 1.36515 1.83894 1.45949 1.47836 1.36317 1.04961 1.21087 0.95550 0.93930 0.86696 1.19427 0.95533 0.96721 0.92158 1.20439 0.91542 1.04478 1.35169 0.93325 1.25508 0.99190 0.96662 0.94873 1.70018 1.11596 1.24561 1.50637 0.86168 0.78537 0.83025 0.76381 1.22132 1.22432 1.16719 1.22778 0.91187 1.02339 1.02844 1.23184 1.05849 0.95166 0.98672 1.22899 1.01383 0.98642 0.92563 1.22852 1.03958 0.94230 0.94676 1.22951 1.01475 0.93334 0.98531 0.89305 0.92289 0.91641 0.92640 0.93787 0.92698 0.95292 0.90036 0.87288 0.75219 0.95051 0.92437 0.92420 0.89408 0.88363 0.89651 0.89222 0.91286 0.89598 0.87155 0.90149 0.88520 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.89 6.66 71.98 0.48 1.37 16 3 O -0.40 -9.34 10.34 -148.98 -1.54 -10.88 16 4 C 0.07 1.55 5.56 71.98 0.40 1.95 16 5 C -0.08 -1.73 4.85 30.59 0.15 -1.58 16 6 C -0.10 -2.64 0.80 -52.40 -0.04 -2.68 16 7 C 0.52 18.80 5.81 87.66 0.51 19.31 16 8 O -0.59 -26.37 15.98 -3.05 -0.05 -26.42 16 9 N -0.70 -26.55 5.37 -463.04 -2.49 -29.04 16 10 C 0.15 6.60 4.68 86.38 0.40 7.01 16 11 C -0.04 -1.63 1.13 -52.90 -0.06 -1.69 16 12 C -0.48 -25.87 9.53 25.60 0.24 -25.63 16 13 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 14 C 0.04 2.12 5.41 84.65 0.46 2.58 16 15 N -0.93 -56.56 13.96 21.45 0.30 -56.26 16 16 Si 0.93 46.87 24.42 68.60 1.68 48.55 16 17 H -0.29 -15.45 6.76 99.48 0.67 -14.77 16 18 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 19 H -0.24 -11.45 6.90 99.48 0.69 -10.76 16 20 C -0.15 -5.53 9.77 30.60 0.30 -5.23 16 21 C -0.19 -7.32 9.89 30.62 0.30 -7.02 16 22 C -0.12 -2.72 6.79 31.18 0.21 -2.51 16 23 C -0.12 -2.12 7.74 31.18 0.24 -1.88 16 24 C -0.13 -2.90 7.22 31.12 0.22 -2.67 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.24 7.18 -2.39 -0.02 1.23 16 31 H 0.03 0.81 7.53 -2.39 -0.02 0.79 16 32 H 0.08 1.75 7.83 -2.39 -0.02 1.74 16 33 H 0.11 1.83 7.31 -2.39 -0.02 1.81 16 34 H 0.41 14.20 8.07 -92.71 -0.75 13.45 16 35 H 0.03 1.59 2.62 -2.38 -0.01 1.58 16 36 H 0.06 2.41 7.91 -2.39 -0.02 2.39 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.09 3.10 8.06 -2.39 -0.02 3.08 16 42 H 0.07 1.96 7.54 -2.39 -0.02 1.94 16 43 H 0.09 1.70 7.27 -2.39 -0.02 1.69 16 44 H 0.11 1.40 7.60 -2.39 -0.02 1.39 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.10 1.89 8.10 -2.39 -0.02 1.88 16 47 H 0.06 1.83 8.09 -2.39 -0.02 1.81 16 Total: -1.00 -68.87 371.70 2.60 -66.27 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.14 Total: 27.84 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 4.56 Total: -20.06 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.19 Total: -85.29 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.59 Total: -37.30 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.68 Total: 48.55 kcal Total: -68.87 2.60 -66.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431147587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.605 kcal (2) G-P(sol) polarization free energy of solvation -68.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds