Wall clock time and date at job start Tue Mar 31 2020 08:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00332 * 2 1 4 4 H 1.08995 * 109.47038 * 30.00446 * 3 2 1 5 5 C 1.52997 * 109.47461 * 269.99974 * 3 2 1 6 6 C 1.52994 * 109.47276 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.47027 * 60.00253 * 6 5 3 8 8 C 1.52997 * 109.46886 * 299.99985 * 7 6 5 9 9 H 1.09008 * 109.47102 * 300.00085 * 8 7 6 10 10 C 1.52998 * 109.46979 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47611 * 64.99561 * 10 8 7 12 12 O 1.21280 * 119.99667 * 0.02562 * 11 10 8 13 13 N 1.34770 * 120.00255 * 179.97438 * 11 10 8 14 14 C 1.46499 * 120.00263 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47205 * 178.27530 * 14 13 11 16 16 C 1.50703 * 115.55055 * 65.14383 * 15 14 13 17 17 H 1.08001 * 119.99824 * 265.40476 * 16 15 14 18 18 C 1.37876 * 120.00196 * 85.40049 * 16 15 14 19 19 N 1.31518 * 120.00037 * 353.55730 * 18 16 15 20 20 Si 1.86801 * 120.00248 * 173.55333 * 18 16 15 21 21 H 1.48506 * 109.46838 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47073 * 119.99981 * 20 18 16 23 23 H 1.48499 * 109.47281 * 240.00202 * 20 18 16 24 24 C 1.52991 * 117.50103 * 279.46817 * 15 14 13 25 25 C 1.53004 * 117.49821 * 210.81067 * 15 14 13 26 26 C 1.52994 * 109.47276 * 60.00167 * 8 7 6 27 27 H 1.09003 * 109.47306 * 300.00304 * 1 2 3 28 28 H 1.09002 * 109.47063 * 59.99248 * 1 2 3 29 29 H 1.08997 * 109.47744 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46897 * 300.00196 * 5 3 2 31 31 H 1.09001 * 109.47080 * 59.99813 * 5 3 2 32 32 H 1.08997 * 109.47059 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47306 * 299.99931 * 6 5 3 34 34 H 1.08995 * 109.47044 * 60.00110 * 7 6 5 35 35 H 1.09003 * 109.47130 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47271 * 184.99815 * 10 8 7 37 37 H 1.09002 * 109.46908 * 304.99363 * 10 8 7 38 38 H 0.97002 * 119.99760 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.46908 * 298.27663 * 14 13 11 40 40 H 1.08995 * 109.46892 * 58.27445 * 14 13 11 41 41 H 0.96995 * 119.99929 * 185.05854 * 19 18 16 42 42 H 1.08999 * 117.49749 * 0.02562 * 24 15 14 43 43 H 1.09004 * 117.49968 * 145.02070 * 24 15 14 44 44 H 1.08995 * 117.49870 * 214.98508 * 25 15 14 45 45 H 1.09003 * 117.49436 * 359.97366 * 25 15 14 46 46 H 1.08997 * 109.47059 * 180.02562 * 26 8 7 47 47 H 1.08999 * 109.47306 * 60.00069 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2178 1.7713 -1.4424 6 6 2.8407 3.1687 -1.4424 7 6 4.1895 3.1258 -0.7213 8 6 3.9820 2.6598 0.7211 9 1 3.3171 3.3540 1.2351 10 6 5.3307 2.6174 1.4423 11 6 5.8867 4.0140 1.5505 12 8 5.2652 4.9510 1.0959 13 7 7.0741 4.2218 2.1533 14 6 7.6143 5.5794 2.2590 15 6 8.9420 5.5423 3.0184 16 6 10.0620 4.8023 2.3337 17 1 10.2455 3.7640 2.5676 18 6 10.8525 5.4506 1.4086 19 7 10.5526 6.6738 1.0296 20 14 12.3494 4.5919 0.6935 21 1 12.4666 3.2321 1.2790 22 1 12.2016 4.4847 -0.7802 23 1 13.5695 5.3758 1.0130 24 6 8.8806 5.4749 4.5456 25 6 9.3128 6.7698 3.8532 26 6 3.3591 1.2624 0.7211 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.8830 1.0774 -1.9563 31 1 1.2570 1.8015 -1.9563 32 1 2.9889 3.5004 -2.4700 33 1 2.1759 3.8629 -0.9284 34 1 4.8543 2.4316 -1.2353 35 1 4.6332 4.1214 -0.7209 36 1 5.1959 2.2017 2.4409 37 1 6.0243 1.9928 0.8794 38 1 7.5709 3.4724 2.5172 39 1 7.7782 5.9839 1.2601 40 1 6.9065 6.2113 2.7953 41 1 11.0643 7.1027 0.3260 42 1 7.8943 5.4565 5.0093 43 1 9.6505 4.8955 5.0552 44 1 10.3669 7.0418 3.9074 45 1 8.6111 7.6038 3.8609 46 1 3.2109 0.9307 1.7487 47 1 4.0239 0.5682 0.2071 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431165673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:20 Heat of formation + Delta-G solvation = -108.337145 kcal Electronic energy + Delta-G solvation = -24204.778855 eV Core-core repulsion = 20772.302086 eV Total energy + Delta-G solvation = -3432.476769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02175 -39.88010 -38.51381 -37.37066 -34.86045 -33.97011 -33.36217 -31.05015 -29.09487 -27.66189 -27.28283 -26.45412 -23.34081 -23.01074 -22.56632 -21.31565 -20.92700 -20.64357 -18.33747 -17.65806 -17.39333 -16.74633 -16.60309 -16.37584 -16.29593 -16.00190 -15.77940 -15.30340 -14.97368 -14.63665 -14.40502 -14.13875 -13.82154 -13.71592 -13.49184 -13.16932 -12.94728 -12.93137 -12.84380 -12.67468 -12.40910 -12.31440 -12.04618 -11.92800 -11.90985 -11.52745 -11.45292 -11.34788 -11.26613 -10.85251 -10.64354 -10.45285 -10.35808 -10.01876 -9.74384 -8.10099 -6.23214 1.41031 1.44959 1.54152 1.84647 2.40135 2.45434 2.86562 3.18466 3.50911 3.68806 3.77261 3.95928 4.12672 4.13555 4.24854 4.27801 4.34681 4.51514 4.52867 4.55379 4.56566 4.59035 4.66405 4.68464 4.73235 4.74435 4.78948 4.86855 4.89882 4.99630 5.04429 5.08437 5.09091 5.24536 5.27385 5.27655 5.35201 5.49202 5.56493 5.60370 5.62178 5.74574 5.79963 6.31994 6.37122 6.83018 6.88824 7.46313 7.50106 8.97653 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.003051 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.549694 B = 9176.012373 C = 9590.898108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.089 3.911 4 H 0.063 0.937 5 C -0.133 4.133 6 C -0.110 4.110 7 C -0.124 4.124 8 C -0.059 4.059 9 H 0.065 0.935 10 C -0.127 4.127 11 C 0.499 3.501 12 O -0.591 6.591 13 N -0.703 5.703 14 C 0.181 3.819 15 C 0.006 3.994 16 C -0.503 4.503 17 H 0.065 0.935 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.949 3.051 21 H -0.260 1.260 22 H -0.287 1.287 23 H -0.286 1.286 24 C -0.175 4.175 25 C -0.162 4.162 26 C -0.104 4.104 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.410 0.590 39 H 0.026 0.974 40 H 0.032 0.968 41 H 0.258 0.742 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.745 -13.035 -0.479 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.032 3.968 4 H 0.081 0.919 5 C -0.171 4.171 6 C -0.148 4.148 7 C -0.161 4.161 8 C -0.078 4.078 9 H 0.084 0.916 10 C -0.167 4.167 11 C 0.287 3.713 12 O -0.473 6.473 13 N -0.353 5.353 14 C 0.056 3.944 15 C 0.005 3.995 16 C -0.541 4.541 17 H 0.083 0.917 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.776 3.224 21 H -0.184 1.184 22 H -0.214 1.214 23 H -0.212 1.212 24 C -0.212 4.212 25 C -0.201 4.201 26 C -0.141 4.141 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.245 0.755 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.954 -12.370 -0.858 21.005 hybrid contribution 1.140 0.335 -0.545 1.307 sum -15.814 -12.035 -1.403 19.922 Atomic orbital electron populations 1.22947 0.80002 1.03656 1.00571 1.87867 1.21002 1.28354 1.95201 1.22139 0.94965 0.84088 0.95619 0.91874 1.21978 1.01354 0.96675 0.97087 1.21408 0.96242 0.96576 1.00556 1.21709 0.97673 1.01478 0.95264 1.20732 0.94886 0.96417 0.95754 0.91640 1.21745 0.98146 0.92178 1.04633 1.21404 0.80614 0.92580 0.76692 1.90608 1.60636 1.46415 1.49644 1.45934 1.20700 1.10275 1.58361 1.20483 0.92840 0.82701 0.98361 1.19072 0.92966 0.98900 0.88541 1.20711 1.12790 0.97060 1.23520 0.91680 1.25718 0.99732 0.95188 0.97080 1.70115 1.41344 1.14210 1.29018 0.85639 0.79808 0.79196 0.77789 1.18367 1.21373 1.21218 1.23003 1.01202 1.00789 0.96240 1.22431 0.99362 0.91469 1.06802 1.21563 0.95131 0.96004 1.01413 0.93415 0.93531 0.88508 0.91476 0.91235 0.91560 0.92294 0.92094 0.92864 0.86264 0.87372 0.75478 0.95593 0.94947 0.93280 0.89285 0.89512 0.91905 0.91288 0.90252 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.40 -7.93 10.35 -148.98 -1.54 -9.47 16 3 C 0.09 1.68 2.61 30.60 0.08 1.76 16 4 H 0.06 1.13 7.79 -2.39 -0.02 1.12 16 5 C -0.13 -2.48 5.54 30.59 0.17 -2.31 16 6 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 7 C -0.12 -3.20 4.95 30.60 0.15 -3.05 16 8 C -0.06 -1.36 1.84 -10.80 -0.02 -1.38 16 9 H 0.07 1.69 7.95 -2.38 -0.02 1.67 16 10 C -0.13 -3.00 5.18 29.85 0.15 -2.85 16 11 C 0.50 17.38 7.55 87.66 0.66 18.04 16 12 O -0.59 -25.20 13.97 -3.03 -0.04 -25.24 16 13 N -0.70 -26.09 5.47 -463.08 -2.54 -28.62 16 14 C 0.18 8.23 5.50 86.38 0.48 8.71 16 15 C 0.01 0.27 1.38 -52.93 -0.07 0.20 16 16 C -0.50 -25.43 8.63 25.60 0.22 -25.21 16 17 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 18 C 0.02 1.23 5.39 84.65 0.46 1.69 16 19 N -0.91 -51.54 12.91 21.45 0.28 -51.26 16 20 Si 0.95 42.00 29.55 68.60 2.03 44.03 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 C -0.18 -6.87 9.96 30.61 0.30 -6.56 16 25 C -0.16 -7.40 9.42 30.62 0.29 -7.11 16 26 C -0.10 -1.95 4.85 30.59 0.15 -1.80 16 27 H 0.05 0.56 8.09 -2.39 -0.02 0.54 16 28 H 0.05 0.55 7.87 -2.39 -0.02 0.53 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.14 7.87 -2.39 -0.02 1.12 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.78 5.95 -2.39 -0.01 1.77 16 36 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.41 13.42 8.37 -92.71 -0.78 12.64 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.03 1.47 8.09 -2.39 -0.02 1.45 16 41 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 42 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -63.52 375.19 2.76 -60.76 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.15 Total: 30.33 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.43 Total: -20.53 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -2.26 Total: -79.88 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.58 Total: -34.72 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -63.52 2.76 -60.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431165673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.574 kcal (2) G-P(sol) polarization free energy of solvation -63.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds