Wall clock time and date at job start Tue Mar 31 2020 08:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00036 * 2 1 4 4 H 1.08997 * 109.46784 * 329.99482 * 3 2 1 5 5 C 1.52998 * 109.47247 * 90.00074 * 3 2 1 6 6 C 1.53000 * 109.46931 * 59.99954 * 5 3 2 7 7 C 1.53003 * 109.47297 * 60.00098 * 6 5 3 8 8 C 1.52998 * 109.47050 * 299.99829 * 7 6 5 9 9 H 1.08998 * 109.47236 * 300.00086 * 8 7 6 10 10 C 1.53001 * 109.47417 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46650 * 64.99959 * 10 8 7 12 12 O 1.21273 * 120.00397 * 6.46120 * 11 10 8 13 13 N 1.34782 * 119.99273 * 186.46512 * 11 10 8 14 14 C 1.46503 * 119.99461 * 185.57349 * 13 11 10 15 15 C 1.52997 * 109.46878 * 175.93938 * 14 13 11 16 16 C 1.50695 * 115.55300 * 39.14355 * 15 14 13 17 17 H 1.07998 * 120.00221 * 266.88626 * 16 15 14 18 18 C 1.37884 * 119.99765 * 86.88294 * 16 15 14 19 19 N 1.31509 * 119.99909 * 178.38824 * 18 16 15 20 20 Si 1.86800 * 119.99694 * 358.38784 * 18 16 15 21 21 H 1.48505 * 109.46957 * 90.21473 * 20 18 16 22 22 H 1.48503 * 109.46806 * 210.21023 * 20 18 16 23 23 H 1.48494 * 109.47620 * 330.21118 * 20 18 16 24 24 C 1.53003 * 117.49796 * 253.43837 * 15 14 13 25 25 C 1.52997 * 60.00063 * 252.51249 * 24 15 14 26 26 C 1.53001 * 109.46813 * 210.00323 * 3 2 1 27 27 H 1.08999 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47007 * 300.00187 * 1 2 3 29 29 H 1.08999 * 109.47061 * 59.99863 * 1 2 3 30 30 H 1.08998 * 109.47236 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.46878 * 299.99830 * 5 3 2 32 32 H 1.09006 * 109.47148 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47047 * 299.99976 * 6 5 3 34 34 H 1.09001 * 109.46730 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.47171 * 59.99955 * 7 6 5 36 36 H 1.09002 * 109.46919 * 305.00249 * 10 8 7 37 37 H 1.08992 * 109.47174 * 185.00192 * 10 8 7 38 38 H 0.96996 * 120.00522 * 5.57664 * 13 11 10 39 39 H 1.08998 * 109.47616 * 295.93962 * 14 13 11 40 40 H 1.09004 * 109.47123 * 55.94111 * 14 13 11 41 41 H 0.97007 * 119.99857 * 180.02562 * 19 18 16 42 42 H 1.09009 * 117.49832 * 0.02562 * 24 15 14 43 43 H 1.09007 * 117.50020 * 145.01866 * 24 15 14 44 44 H 1.09004 * 117.49387 * 252.50757 * 25 24 15 45 45 H 1.08998 * 117.50178 * 107.48931 * 25 24 15 46 46 H 1.08998 * 109.46970 * 180.02562 * 26 3 2 47 47 H 1.08997 * 109.47723 * 59.99627 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.1515 0.7973 2.1637 7 6 4.5002 0.7551 1.4424 8 6 4.2927 0.2892 -0.0001 9 1 3.8494 -0.7066 -0.0001 10 6 5.6414 0.2463 -0.7212 11 6 6.5177 -0.8022 -0.0857 12 8 6.0665 -1.5307 0.7725 13 7 7.8029 -0.9302 -0.4710 14 6 8.6200 -2.0259 0.0563 15 6 9.9961 -2.0032 -0.6120 16 6 10.5847 -0.6350 -0.8415 17 1 10.4287 -0.1311 -1.7838 18 6 11.3225 -0.0266 0.1518 19 7 11.8629 1.1536 -0.0597 20 14 11.5545 -0.8786 1.7979 21 1 12.7788 -1.7180 1.7526 22 1 11.6932 0.1415 2.8681 23 1 10.3763 -1.7367 2.0817 24 6 10.2940 -3.0844 -1.6527 25 6 10.9626 -3.1411 -0.2778 26 6 3.3589 1.2632 -0.7213 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.6615 2.7669 1.4425 31 1 1.2569 1.8015 1.9563 32 1 3.2990 1.1290 3.1915 33 1 2.7081 -0.1984 2.1637 34 1 5.1652 0.0608 1.9560 35 1 4.9436 1.7508 1.4424 36 1 6.1257 1.2198 -0.6443 37 1 5.4843 0.0007 -1.7714 38 1 8.1868 -0.2969 -1.0975 39 1 8.7371 -1.9061 1.1333 40 1 8.1304 -2.9772 -0.1523 41 1 12.3823 1.5815 0.6390 42 1 9.5093 -3.8118 -1.8616 43 1 10.9157 -2.8063 -2.5038 44 1 12.0244 -2.9003 -0.2242 45 1 10.6182 -3.9059 0.4183 46 1 3.8024 2.2588 -0.7210 47 1 3.2111 0.9312 -1.7490 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431165674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:23 Heat of formation + Delta-G solvation = -85.278824 kcal Electronic energy + Delta-G solvation = -24614.570487 eV Core-core repulsion = 21183.093602 eV Total energy + Delta-G solvation = -3431.476885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85795 -38.78275 -37.10444 -36.05416 -33.27404 -32.27765 -32.18273 -30.26358 -27.85739 -26.65011 -26.00879 -24.90982 -22.52139 -21.72576 -21.52816 -19.69240 -19.53464 -19.01184 -16.65996 -16.45928 -16.08935 -15.80591 -15.47701 -15.17730 -14.98081 -14.76563 -14.46953 -13.75325 -13.66301 -13.38453 -12.94742 -12.82159 -12.64475 -12.46644 -12.35460 -12.25010 -12.00732 -11.77333 -11.46364 -11.32026 -11.17728 -10.88076 -10.68052 -10.51706 -10.44494 -10.19798 -10.16669 -10.08239 -9.67364 -9.52411 -9.26247 -9.03353 -8.70159 -8.59301 -8.06737 -6.21091 -4.26519 3.26834 3.28736 3.37041 3.43313 3.67350 3.93237 4.37185 4.64124 4.69644 4.81603 4.89911 5.07301 5.10890 5.12856 5.18914 5.24668 5.26298 5.45875 5.47390 5.48478 5.58060 5.69872 5.74364 5.80529 5.82354 5.86256 5.90761 5.98459 6.01110 6.09754 6.24158 6.32943 6.34480 6.37698 6.45691 6.56288 6.63654 6.72845 6.73499 6.93937 7.08213 7.11625 7.31393 7.66296 8.36605 8.39367 8.78708 8.97095 9.42827 10.89493 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023880 B = 0.003455 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.247157 B = 8102.285758 C = 8462.718525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.090 3.910 4 H 0.056 0.944 5 C -0.141 4.141 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.064 4.064 9 H 0.087 0.913 10 C -0.139 4.139 11 C 0.504 3.496 12 O -0.559 6.559 13 N -0.701 5.701 14 C 0.152 3.848 15 C -0.015 4.015 16 C -0.495 4.495 17 H 0.079 0.921 18 C 0.084 3.916 19 N -0.893 5.893 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.255 1.255 24 C -0.179 4.179 25 C -0.196 4.196 26 C -0.112 4.112 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.410 0.590 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.806 1.186 -0.648 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.178 4.178 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.083 4.083 9 H 0.105 0.895 10 C -0.179 4.179 11 C 0.290 3.710 12 O -0.439 6.439 13 N -0.352 5.352 14 C 0.028 3.972 15 C -0.016 4.016 16 C -0.532 4.532 17 H 0.097 0.903 18 C -0.120 4.120 19 N -0.529 5.529 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.179 1.179 24 C -0.216 4.216 25 C -0.234 4.234 26 C -0.149 4.149 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.248 0.752 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.874 0.651 0.016 18.886 hybrid contribution 0.348 0.218 0.626 0.749 sum -18.526 0.870 0.642 18.558 Atomic orbital electron populations 1.22751 0.81890 1.02493 0.99497 1.87992 1.18802 1.27696 1.94963 1.22118 0.94706 0.84439 0.95461 0.92555 1.22035 0.99920 0.99694 0.96180 1.21375 0.95543 0.99809 0.98047 1.21667 0.97196 1.01174 0.95560 1.20778 0.92818 1.00380 0.94282 0.89463 1.21745 0.96036 0.99257 1.00851 1.20590 0.82640 0.85010 0.82770 1.90614 1.74448 1.46597 1.32284 1.46036 1.10404 1.31378 1.47392 1.21022 0.90458 0.87875 0.97823 1.19614 0.91864 0.91747 0.98372 1.20155 1.32681 0.98121 1.02226 0.90287 1.24953 0.94174 0.94418 0.98417 1.69886 1.33633 1.15217 1.34173 0.86894 0.79577 0.79437 0.83533 1.20391 1.22101 1.17925 1.22886 1.02933 1.02857 0.92894 1.22943 0.99217 1.02519 0.98746 1.21720 0.93712 1.00368 0.99128 0.89885 0.94394 0.94394 0.91224 0.92405 0.92631 0.91336 0.90114 0.92818 0.89292 0.89195 0.75232 0.92317 0.93616 0.92425 0.90897 0.89499 0.89256 0.90811 0.90658 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.37 9.00 -35.23 -0.32 -4.69 16 3 C 0.09 0.92 2.92 -26.73 -0.08 0.84 16 4 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 5 C -0.14 -1.41 5.63 -26.73 -0.15 -1.56 16 6 C -0.11 -1.35 5.78 -26.73 -0.15 -1.50 16 7 C -0.12 -1.66 4.95 -26.73 -0.13 -1.79 16 8 C -0.06 -0.86 1.69 -90.62 -0.15 -1.01 16 9 H 0.09 1.39 7.40 -51.93 -0.38 1.00 16 10 C -0.14 -1.94 5.18 -27.88 -0.14 -2.08 16 11 C 0.50 9.29 7.42 -10.98 -0.08 9.21 16 12 O -0.56 -11.94 14.24 5.56 0.08 -11.86 16 13 N -0.70 -13.74 5.37 -60.29 -0.32 -14.06 16 14 C 0.15 3.25 5.57 -4.04 -0.02 3.22 16 15 C -0.01 -0.33 1.20 -155.66 -0.19 -0.51 16 16 C -0.49 -12.69 7.95 -34.44 -0.27 -12.96 16 17 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 18 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 19 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 20 Si 0.88 21.31 25.13 -169.99 -4.27 17.04 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 H -0.25 -6.02 5.32 56.52 0.30 -5.72 16 24 C -0.18 -3.50 9.88 -26.73 -0.26 -3.76 16 25 C -0.20 -4.07 7.66 -26.73 -0.20 -4.28 16 26 C -0.11 -1.19 4.95 -26.73 -0.13 -1.32 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 29 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 34 H 0.08 1.38 6.19 -51.93 -0.32 1.06 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.41 7.89 7.34 -40.82 -0.30 7.59 16 39 H 0.06 1.36 6.25 -51.93 -0.32 1.04 16 40 H 0.05 0.94 7.94 -51.93 -0.41 0.52 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 42 H 0.07 1.28 8.08 -51.92 -0.42 0.86 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.94 7.29 -51.93 -0.38 1.56 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -29.95 361.85 -8.06 -38.01 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.47 Total: 9.07 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.98 Total: -13.98 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.45 Total: -39.05 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.24 Total: -16.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.27 Total: 17.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.95 -8.06 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431165674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.272 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds