Wall clock time and date at job start Tue Mar 31 2020 08:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00036 * 2 1 4 4 H 1.08997 * 109.46784 * 329.99482 * 3 2 1 5 5 C 1.52998 * 109.47247 * 90.00074 * 3 2 1 6 6 C 1.53000 * 109.46931 * 59.99954 * 5 3 2 7 7 C 1.53003 * 109.47297 * 60.00098 * 6 5 3 8 8 C 1.52998 * 109.47050 * 299.99829 * 7 6 5 9 9 H 1.08998 * 109.47236 * 300.00086 * 8 7 6 10 10 C 1.53001 * 109.47417 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46650 * 64.99959 * 10 8 7 12 12 O 1.21273 * 120.00397 * 6.46120 * 11 10 8 13 13 N 1.34782 * 119.99273 * 186.46512 * 11 10 8 14 14 C 1.46503 * 119.99461 * 185.57349 * 13 11 10 15 15 C 1.52997 * 109.46878 * 175.93938 * 14 13 11 16 16 C 1.50695 * 115.55300 * 39.14355 * 15 14 13 17 17 H 1.07998 * 120.00221 * 266.88626 * 16 15 14 18 18 C 1.37884 * 119.99765 * 86.88294 * 16 15 14 19 19 N 1.31509 * 119.99909 * 178.38824 * 18 16 15 20 20 Si 1.86800 * 119.99694 * 358.38784 * 18 16 15 21 21 H 1.48505 * 109.46957 * 90.21473 * 20 18 16 22 22 H 1.48503 * 109.46806 * 210.21023 * 20 18 16 23 23 H 1.48494 * 109.47620 * 330.21118 * 20 18 16 24 24 C 1.53003 * 117.49796 * 253.43837 * 15 14 13 25 25 C 1.52997 * 60.00063 * 252.51249 * 24 15 14 26 26 C 1.53001 * 109.46813 * 210.00323 * 3 2 1 27 27 H 1.08999 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47007 * 300.00187 * 1 2 3 29 29 H 1.08999 * 109.47061 * 59.99863 * 1 2 3 30 30 H 1.08998 * 109.47236 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.46878 * 299.99830 * 5 3 2 32 32 H 1.09006 * 109.47148 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47047 * 299.99976 * 6 5 3 34 34 H 1.09001 * 109.46730 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.47171 * 59.99955 * 7 6 5 36 36 H 1.09002 * 109.46919 * 305.00249 * 10 8 7 37 37 H 1.08992 * 109.47174 * 185.00192 * 10 8 7 38 38 H 0.96996 * 120.00522 * 5.57664 * 13 11 10 39 39 H 1.08998 * 109.47616 * 295.93962 * 14 13 11 40 40 H 1.09004 * 109.47123 * 55.94111 * 14 13 11 41 41 H 0.97007 * 119.99857 * 180.02562 * 19 18 16 42 42 H 1.09009 * 117.49832 * 0.02562 * 24 15 14 43 43 H 1.09007 * 117.50020 * 145.01866 * 24 15 14 44 44 H 1.09004 * 117.49387 * 252.50757 * 25 24 15 45 45 H 1.08998 * 117.50178 * 107.48931 * 25 24 15 46 46 H 1.08998 * 109.46970 * 180.02562 * 26 3 2 47 47 H 1.08997 * 109.47723 * 59.99627 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.1515 0.7973 2.1637 7 6 4.5002 0.7551 1.4424 8 6 4.2927 0.2892 -0.0001 9 1 3.8494 -0.7066 -0.0001 10 6 5.6414 0.2463 -0.7212 11 6 6.5177 -0.8022 -0.0857 12 8 6.0665 -1.5307 0.7725 13 7 7.8029 -0.9302 -0.4710 14 6 8.6200 -2.0259 0.0563 15 6 9.9961 -2.0032 -0.6120 16 6 10.5847 -0.6350 -0.8415 17 1 10.4287 -0.1311 -1.7838 18 6 11.3225 -0.0266 0.1518 19 7 11.8629 1.1536 -0.0597 20 14 11.5545 -0.8786 1.7979 21 1 12.7788 -1.7180 1.7526 22 1 11.6932 0.1415 2.8681 23 1 10.3763 -1.7367 2.0817 24 6 10.2940 -3.0844 -1.6527 25 6 10.9626 -3.1411 -0.2778 26 6 3.3589 1.2632 -0.7213 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.6615 2.7669 1.4425 31 1 1.2569 1.8015 1.9563 32 1 3.2990 1.1290 3.1915 33 1 2.7081 -0.1984 2.1637 34 1 5.1652 0.0608 1.9560 35 1 4.9436 1.7508 1.4424 36 1 6.1257 1.2198 -0.6443 37 1 5.4843 0.0007 -1.7714 38 1 8.1868 -0.2969 -1.0975 39 1 8.7371 -1.9061 1.1333 40 1 8.1304 -2.9772 -0.1523 41 1 12.3823 1.5815 0.6390 42 1 9.5093 -3.8118 -1.8616 43 1 10.9157 -2.8063 -2.5038 44 1 12.0244 -2.9003 -0.2242 45 1 10.6182 -3.9059 0.4183 46 1 3.8024 2.2588 -0.7210 47 1 3.2111 0.9312 -1.7490 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431165674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:23 Heat of formation + Delta-G solvation = -103.899083 kcal Electronic energy + Delta-G solvation = -24615.377922 eV Core-core repulsion = 21183.093602 eV Total energy + Delta-G solvation = -3432.284320 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04827 -39.97167 -38.72591 -37.04099 -34.88137 -34.24889 -33.30060 -31.14537 -29.18823 -27.81544 -27.30167 -26.48639 -23.44908 -23.33250 -22.61117 -21.27617 -20.70131 -20.45154 -18.42340 -17.81886 -17.17759 -16.93196 -16.68202 -16.48394 -16.37391 -16.01067 -15.73646 -15.17141 -14.96447 -14.75940 -14.37843 -14.25488 -14.08751 -13.95815 -13.42343 -13.29517 -13.10997 -12.95460 -12.69450 -12.67234 -12.46082 -12.15788 -12.11791 -12.00059 -11.84736 -11.56004 -11.41568 -11.19933 -11.12789 -11.00638 -10.73171 -10.52390 -10.33206 -10.30515 -9.71639 -8.31305 -6.37286 1.31837 1.38614 1.48030 1.82115 2.35215 2.46922 2.98763 3.05191 3.21514 3.74318 3.81537 3.91956 4.05209 4.08683 4.22793 4.32016 4.35220 4.40615 4.43979 4.50628 4.56573 4.59754 4.61792 4.66308 4.72970 4.77103 4.85226 4.86398 4.88347 4.89419 4.93147 5.00855 5.07804 5.09648 5.22750 5.31608 5.35658 5.39536 5.47746 5.50081 5.65207 5.67468 5.76780 6.29332 6.42637 6.70407 6.86756 7.34142 7.46055 8.82332 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023880 B = 0.003455 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.247157 B = 8102.285758 C = 8462.718525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.087 3.913 4 H 0.081 0.919 5 C -0.136 4.136 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.058 4.058 9 H 0.058 0.942 10 C -0.132 4.132 11 C 0.500 3.500 12 O -0.591 6.591 13 N -0.705 5.705 14 C 0.160 3.840 15 C -0.038 4.038 16 C -0.479 4.479 17 H 0.053 0.947 18 C 0.038 3.962 19 N -0.936 5.936 20 Si 0.921 3.079 21 H -0.269 1.269 22 H -0.303 1.303 23 H -0.246 1.246 24 C -0.155 4.155 25 C -0.196 4.196 26 C -0.108 4.108 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.412 0.588 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.265 0.735 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.437 1.145 -1.327 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.029 3.971 4 H 0.099 0.901 5 C -0.174 4.174 6 C -0.145 4.145 7 C -0.156 4.156 8 C -0.077 4.077 9 H 0.076 0.924 10 C -0.171 4.171 11 C 0.288 3.712 12 O -0.473 6.473 13 N -0.356 5.356 14 C 0.035 3.965 15 C -0.039 4.039 16 C -0.517 4.517 17 H 0.071 0.929 18 C -0.161 4.161 19 N -0.576 5.576 20 Si 0.748 3.252 21 H -0.194 1.194 22 H -0.230 1.230 23 H -0.170 1.170 24 C -0.192 4.192 25 C -0.234 4.234 26 C -0.145 4.145 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.249 0.751 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.519 0.594 -0.676 20.539 hybrid contribution 0.821 0.194 0.791 1.156 sum -19.699 0.787 0.115 19.715 Atomic orbital electron populations 1.22903 0.80435 1.03164 1.00611 1.87967 1.20574 1.28756 1.95121 1.22226 0.94802 0.84502 0.95523 0.90100 1.22021 0.99825 0.99449 0.96068 1.21320 0.95066 0.99611 0.98511 1.21623 0.97498 1.00513 0.95939 1.20690 0.92915 0.99825 0.94268 0.92367 1.21811 0.95363 0.98240 1.01735 1.21385 0.82393 0.85306 0.82115 1.90604 1.74904 1.48066 1.33700 1.46080 1.10860 1.31190 1.47506 1.20838 0.90284 0.88979 0.96368 1.19510 0.92504 0.90646 1.01251 1.20275 1.31312 0.99435 1.00632 0.92928 1.25559 0.94556 0.94853 1.01143 1.69990 1.35550 1.16865 1.35145 0.86181 0.80076 0.78632 0.80298 1.19427 1.23005 1.16957 1.22927 1.02833 1.01355 0.92126 1.22993 0.98292 1.01951 1.00155 1.21726 0.93390 1.00281 0.99142 0.89606 0.93546 0.92912 0.89788 0.91265 0.92312 0.93358 0.93992 0.91817 0.87741 0.86786 0.75102 0.94648 0.92600 0.92596 0.88150 0.89577 0.90361 0.88699 0.88809 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 113.37 1.23 1.60 16 2 O -0.40 -8.82 9.00 -148.98 -1.34 -10.16 16 3 C 0.09 1.54 2.92 30.59 0.09 1.63 16 4 H 0.08 1.07 7.79 -2.39 -0.02 1.05 16 5 C -0.14 -2.42 5.63 30.59 0.17 -2.24 16 6 C -0.11 -2.58 5.78 30.60 0.18 -2.40 16 7 C -0.12 -3.29 4.95 30.59 0.15 -3.14 16 8 C -0.06 -1.51 1.69 -10.79 -0.02 -1.53 16 9 H 0.06 1.87 7.40 -2.39 -0.02 1.85 16 10 C -0.13 -3.51 5.18 29.85 0.15 -3.36 16 11 C 0.50 18.33 7.42 87.66 0.65 18.98 16 12 O -0.59 -25.64 14.24 -3.01 -0.04 -25.69 16 13 N -0.71 -27.37 5.37 -463.05 -2.49 -29.86 16 14 C 0.16 6.69 5.57 86.38 0.48 7.17 16 15 C -0.04 -1.63 1.20 -52.93 -0.06 -1.70 16 16 C -0.48 -24.63 7.95 25.60 0.20 -24.43 16 17 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 18 C 0.04 2.09 5.47 84.66 0.46 2.55 16 19 N -0.94 -55.07 13.96 21.45 0.30 -54.77 16 20 Si 0.92 43.91 25.13 68.60 1.72 45.63 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 23 H -0.25 -11.26 5.32 99.48 0.53 -10.73 16 24 C -0.16 -5.69 9.88 30.59 0.30 -5.39 16 25 C -0.20 -7.71 7.66 30.59 0.23 -7.48 16 26 C -0.11 -2.02 4.95 30.60 0.15 -1.87 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 0.59 7.87 -2.39 -0.02 0.57 16 29 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 32 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.05 1.34 7.68 -2.39 -0.02 1.32 16 34 H 0.04 1.48 6.19 -2.39 -0.01 1.47 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.41 15.72 7.34 -92.71 -0.68 15.04 16 39 H 0.04 1.63 6.25 -2.39 -0.01 1.62 16 40 H 0.06 2.21 7.94 -2.39 -0.02 2.19 16 41 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 42 H 0.10 3.16 8.08 -2.38 -0.02 3.14 16 43 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 44 H 0.08 3.26 7.29 -2.39 -0.02 3.24 16 45 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -65.86 361.85 2.60 -63.26 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.08 Total: 33.20 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 4.38 Total: -21.61 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.19 Total: -84.63 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.38 Total: -35.85 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.72 Total: 45.63 kcal Total: -65.86 2.60 -63.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431165674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.644 kcal (2) G-P(sol) polarization free energy of solvation -65.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds