Wall clock time and date at job start Tue Mar 31 2020 07:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47654 * 2 1 4 4 C 1.52995 * 109.47194 * 239.99638 * 2 1 3 5 5 C 1.52998 * 109.47502 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46949 * 59.99964 * 5 4 2 7 7 C 1.53002 * 109.47178 * 300.00574 * 6 5 4 8 8 C 1.52992 * 109.47461 * 59.99606 * 7 6 5 9 9 H 1.09001 * 109.47346 * 60.00003 * 8 7 6 10 10 O 1.42900 * 109.47350 * 180.02562 * 8 7 6 11 11 C 1.42907 * 113.99799 * 270.00046 * 10 8 7 12 12 C 1.50700 * 109.46840 * 179.97438 * 11 10 8 13 13 O 1.21274 * 120.00313 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99499 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99802 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47187 * 174.90977 * 15 14 12 17 17 C 1.50698 * 115.54842 * 304.53833 * 16 15 14 18 18 H 1.07994 * 120.00562 * 95.20277 * 17 16 15 19 19 C 1.37884 * 119.99604 * 275.19934 * 17 16 15 20 20 N 1.31515 * 120.00359 * 5.98879 * 19 17 16 21 21 Si 1.86796 * 119.99882 * 185.98874 * 19 17 16 22 22 H 1.48501 * 109.47079 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47241 * 239.99923 * 21 19 17 24 24 H 1.48497 * 109.47040 * 119.99922 * 21 19 17 25 25 C 1.53000 * 117.49859 * 90.20471 * 16 15 14 26 26 C 1.53005 * 117.49813 * 158.86496 * 16 15 14 27 27 H 1.09005 * 109.47053 * 300.00364 * 1 2 3 28 28 H 1.08999 * 109.46844 * 59.99781 * 1 2 3 29 29 H 1.08994 * 109.47473 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47115 * 300.00692 * 4 2 1 31 31 H 1.09004 * 109.46995 * 60.00102 * 4 2 1 32 32 H 1.08993 * 109.47572 * 179.97438 * 5 4 2 33 33 H 1.08996 * 109.47212 * 300.00847 * 5 4 2 34 34 H 1.09007 * 109.46947 * 60.00331 * 6 5 4 35 35 H 1.08993 * 109.47450 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46838 * 299.99297 * 7 6 5 37 37 H 1.09004 * 109.47125 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.46915 * 60.00026 * 11 10 8 39 39 H 1.09005 * 109.46808 * 299.99816 * 11 10 8 40 40 H 0.96996 * 120.00402 * 0.02562 * 14 12 11 41 41 H 1.08994 * 109.46883 * 54.90631 * 15 14 12 42 42 H 1.09006 * 109.46595 * 294.90650 * 15 14 12 43 43 H 0.97003 * 119.99393 * 5.34882 * 20 19 17 44 44 H 1.09003 * 117.49952 * 215.00022 * 25 16 15 45 45 H 1.09000 * 117.50170 * 0.02775 * 25 16 15 46 46 H 1.09002 * 117.49839 * 359.97438 * 26 16 15 47 47 H 1.08998 * 117.49367 * 144.99416 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4435 0.0004 7 6 3.5694 -0.7222 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6757 -1.7491 1.2491 10 8 1.5631 -0.0474 2.4158 11 6 1.3688 -0.9036 3.5433 12 6 0.8687 -0.0917 4.7102 13 8 0.6961 1.1025 4.5885 14 7 0.6131 -0.6929 5.8891 15 6 0.1264 0.0963 7.0234 16 6 -0.2027 -0.8370 8.1903 17 6 -1.1785 -1.9434 7.8823 18 1 -0.8156 -2.9226 7.6072 19 6 -2.5349 -1.7054 7.9520 20 7 -2.9783 -0.4868 8.1711 21 14 -3.7426 -3.1138 7.7352 22 1 -2.9949 -4.3756 7.5029 23 1 -4.6217 -2.8372 6.5708 24 1 -4.5711 -3.2483 8.9601 25 6 0.9152 -1.1391 9.1902 26 6 -0.2461 -0.2266 9.5926 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6766 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2361 -2.1385 33 1 3.9337 0.3056 -1.2486 34 1 3.7157 -2.4711 0.0002 35 1 5.1694 -1.4443 0.0004 36 1 3.9332 0.3053 1.2499 37 1 3.9320 -1.2365 2.1397 38 1 2.3149 -1.3756 3.8084 39 1 0.6366 -1.6718 3.2942 40 1 0.7515 -1.6479 5.9866 41 1 -0.7710 0.6403 6.7290 42 1 0.8963 0.8043 7.3304 43 1 -2.3562 0.2567 8.2063 44 1 0.9448 -2.1381 9.6254 45 1 1.8850 -0.6726 9.0171 46 1 -0.0398 0.8398 9.6839 47 1 -0.9806 -0.6253 10.2924 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431168109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:27 Heat of formation + Delta-G solvation = -94.684548 kcal Electronic energy + Delta-G solvation = -24281.558521 eV Core-core repulsion = 20849.673773 eV Total energy + Delta-G solvation = -3431.884748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.77550 -38.87487 -37.06553 -36.21377 -33.37964 -32.75166 -31.95421 -30.33715 -28.35600 -26.33085 -25.45630 -24.70206 -22.52107 -21.49253 -21.39026 -20.27717 -19.81205 -19.53476 -17.12491 -17.00743 -16.15387 -15.82776 -15.39438 -14.83905 -14.74527 -14.52918 -14.11657 -13.95560 -13.80314 -13.31842 -13.18755 -13.13682 -12.75139 -12.48455 -12.34291 -12.27614 -12.00971 -11.75338 -11.54109 -11.24848 -11.07777 -11.00729 -10.82111 -10.75165 -10.56220 -10.50547 -10.41386 -10.19136 -9.72370 -9.45926 -9.27395 -8.73179 -8.57041 -8.41996 -8.19223 -6.40999 -4.18948 3.11878 3.18692 3.38804 3.41487 3.53964 4.15843 4.44496 4.47087 4.48868 4.70739 4.89113 4.94640 5.04154 5.06670 5.16726 5.20451 5.24566 5.25828 5.29041 5.35260 5.39329 5.50186 5.57543 5.72759 5.75700 5.81770 5.84049 5.87306 5.93157 6.04356 6.07178 6.10958 6.21226 6.22426 6.33244 6.34017 6.51310 6.62728 6.83342 7.08153 7.14134 7.18284 7.28836 8.13598 8.20626 8.31323 8.78367 8.81895 9.57520 10.96864 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.003274 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.320716 B = 8549.056536 C = 9194.379947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.143 4.143 8 C 0.093 3.907 9 H 0.060 0.940 10 O -0.352 6.352 11 C 0.045 3.955 12 C 0.505 3.495 13 O -0.537 6.537 14 N -0.698 5.698 15 C 0.160 3.840 16 C 0.004 3.996 17 C -0.577 4.577 18 H 0.054 0.946 19 C 0.030 3.970 20 N -0.899 5.899 21 Si 1.069 2.931 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.286 1.286 25 C -0.195 4.195 26 C -0.171 4.171 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.402 0.598 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.276 0.724 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.027 -3.844 -15.769 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.181 4.181 8 C 0.035 3.965 9 H 0.078 0.922 10 O -0.270 6.270 11 C -0.035 4.035 12 C 0.290 3.710 13 O -0.414 6.414 14 N -0.349 5.349 15 C 0.037 3.963 16 C 0.003 3.997 17 C -0.614 4.614 18 H 0.072 0.928 19 C -0.177 4.177 20 N -0.532 5.532 21 Si 0.898 3.102 22 H -0.215 1.215 23 H -0.214 1.214 24 H -0.212 1.212 25 C -0.232 4.232 26 C -0.209 4.209 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.236 0.764 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.238 -3.144 -15.800 19.088 hybrid contribution 1.764 -0.388 0.160 1.813 sum 12.002 -3.532 -15.640 20.028 Atomic orbital electron populations 1.21791 0.94497 1.01750 1.02448 1.21173 0.96392 1.00297 0.92627 0.90360 1.21594 0.95374 1.00756 0.97253 1.21577 0.95748 1.00968 0.97693 1.21494 1.00363 0.99302 0.94247 1.22063 0.96034 1.01890 0.98105 1.22184 0.92922 0.95827 0.85605 0.92165 1.88048 1.86360 1.33695 1.18935 1.22255 1.00850 0.93176 0.87184 1.20124 0.78871 0.88371 0.83672 1.90680 1.52290 1.15188 1.83271 1.45724 1.65872 1.12612 1.10710 1.21005 0.97136 0.92503 0.85653 1.19335 0.96730 0.97205 0.86416 1.21213 0.91685 0.95692 1.52821 0.92808 1.25763 0.97379 1.01270 0.93276 1.70662 1.39383 0.99666 1.43501 0.83543 0.75388 0.74284 0.76988 1.21514 1.21450 1.21248 1.22927 0.92488 0.99911 1.07857 1.22733 1.00694 0.96271 1.01170 0.91314 0.92825 0.93049 0.91853 0.91447 0.91949 0.91797 0.91957 0.91767 0.90969 0.91790 0.90914 0.90469 0.76373 0.91706 0.94392 0.91230 0.90034 0.91401 0.91332 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.05 37.16 0.34 -1.31 16 2 C -0.09 -0.91 2.46 -90.62 -0.22 -1.13 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 6 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 7 C -0.14 -1.42 5.54 -26.73 -0.15 -1.57 16 8 C 0.09 1.06 2.04 -26.73 -0.05 1.01 16 9 H 0.06 0.63 7.79 -51.93 -0.40 0.23 16 10 O -0.35 -5.45 8.84 -55.14 -0.49 -5.93 16 11 C 0.05 0.66 6.23 36.01 0.22 0.89 16 12 C 0.51 9.84 7.91 -10.99 -0.09 9.75 16 13 O -0.54 -12.76 16.49 -14.35 -0.24 -13.00 16 14 N -0.70 -13.68 5.36 -60.29 -0.32 -14.01 16 15 C 0.16 3.60 5.49 -4.04 -0.02 3.58 16 16 C 0.00 0.09 1.03 -155.66 -0.16 -0.07 16 17 C -0.58 -14.77 8.26 -34.44 -0.28 -15.06 16 18 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 19 C 0.03 0.81 5.39 -17.82 -0.10 0.71 16 20 N -0.90 -25.88 13.46 55.43 0.75 -25.14 16 21 Si 1.07 24.09 29.91 -169.99 -5.08 19.01 16 22 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.19 -3.97 9.93 -26.69 -0.27 -4.24 16 26 C -0.17 -3.79 8.90 -26.69 -0.24 -4.03 16 27 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 38 H 0.07 0.86 7.87 -51.93 -0.41 0.46 16 39 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.40 7.12 8.16 -40.82 -0.33 6.79 16 41 H 0.06 1.66 7.51 -51.93 -0.39 1.27 16 42 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.28 7.97 6.13 -40.82 -0.25 7.72 16 44 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 47 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -31.00 375.65 -9.76 -40.75 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.56 Total: 7.30 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.47 Total: -14.65 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.42 Total: -39.14 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.72 Total: -18.93 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.08 Total: 19.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.00 -9.76 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431168109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.930 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds