Wall clock time and date at job start Tue Mar 31 2020 07:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47654 * 2 1 4 4 C 1.52995 * 109.47194 * 239.99638 * 2 1 3 5 5 C 1.52998 * 109.47502 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46949 * 59.99964 * 5 4 2 7 7 C 1.53002 * 109.47178 * 300.00574 * 6 5 4 8 8 C 1.52992 * 109.47461 * 59.99606 * 7 6 5 9 9 H 1.09001 * 109.47346 * 60.00003 * 8 7 6 10 10 O 1.42900 * 109.47350 * 180.02562 * 8 7 6 11 11 C 1.42907 * 113.99799 * 270.00046 * 10 8 7 12 12 C 1.50700 * 109.46840 * 179.97438 * 11 10 8 13 13 O 1.21274 * 120.00313 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99499 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99802 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47187 * 174.90977 * 15 14 12 17 17 C 1.50698 * 115.54842 * 304.53833 * 16 15 14 18 18 H 1.07994 * 120.00562 * 95.20277 * 17 16 15 19 19 C 1.37884 * 119.99604 * 275.19934 * 17 16 15 20 20 N 1.31515 * 120.00359 * 5.98879 * 19 17 16 21 21 Si 1.86796 * 119.99882 * 185.98874 * 19 17 16 22 22 H 1.48501 * 109.47079 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47241 * 239.99923 * 21 19 17 24 24 H 1.48497 * 109.47040 * 119.99922 * 21 19 17 25 25 C 1.53000 * 117.49859 * 90.20471 * 16 15 14 26 26 C 1.53005 * 117.49813 * 158.86496 * 16 15 14 27 27 H 1.09005 * 109.47053 * 300.00364 * 1 2 3 28 28 H 1.08999 * 109.46844 * 59.99781 * 1 2 3 29 29 H 1.08994 * 109.47473 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47115 * 300.00692 * 4 2 1 31 31 H 1.09004 * 109.46995 * 60.00102 * 4 2 1 32 32 H 1.08993 * 109.47572 * 179.97438 * 5 4 2 33 33 H 1.08996 * 109.47212 * 300.00847 * 5 4 2 34 34 H 1.09007 * 109.46947 * 60.00331 * 6 5 4 35 35 H 1.08993 * 109.47450 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46838 * 299.99297 * 7 6 5 37 37 H 1.09004 * 109.47125 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.46915 * 60.00026 * 11 10 8 39 39 H 1.09005 * 109.46808 * 299.99816 * 11 10 8 40 40 H 0.96996 * 120.00402 * 0.02562 * 14 12 11 41 41 H 1.08994 * 109.46883 * 54.90631 * 15 14 12 42 42 H 1.09006 * 109.46595 * 294.90650 * 15 14 12 43 43 H 0.97003 * 119.99393 * 5.34882 * 20 19 17 44 44 H 1.09003 * 117.49952 * 215.00022 * 25 16 15 45 45 H 1.09000 * 117.50170 * 0.02775 * 25 16 15 46 46 H 1.09002 * 117.49839 * 359.97438 * 26 16 15 47 47 H 1.08998 * 117.49367 * 144.99416 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4435 0.0004 7 6 3.5694 -0.7222 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6757 -1.7491 1.2491 10 8 1.5631 -0.0474 2.4158 11 6 1.3688 -0.9036 3.5433 12 6 0.8687 -0.0917 4.7102 13 8 0.6961 1.1025 4.5885 14 7 0.6131 -0.6929 5.8891 15 6 0.1264 0.0963 7.0234 16 6 -0.2027 -0.8370 8.1903 17 6 -1.1785 -1.9434 7.8823 18 1 -0.8156 -2.9226 7.6072 19 6 -2.5349 -1.7054 7.9520 20 7 -2.9783 -0.4868 8.1711 21 14 -3.7426 -3.1138 7.7352 22 1 -2.9949 -4.3756 7.5029 23 1 -4.6217 -2.8372 6.5708 24 1 -4.5711 -3.2483 8.9601 25 6 0.9152 -1.1391 9.1902 26 6 -0.2461 -0.2266 9.5926 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6766 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2361 -2.1385 33 1 3.9337 0.3056 -1.2486 34 1 3.7157 -2.4711 0.0002 35 1 5.1694 -1.4443 0.0004 36 1 3.9332 0.3053 1.2499 37 1 3.9320 -1.2365 2.1397 38 1 2.3149 -1.3756 3.8084 39 1 0.6366 -1.6718 3.2942 40 1 0.7515 -1.6479 5.9866 41 1 -0.7710 0.6403 6.7290 42 1 0.8963 0.8043 7.3304 43 1 -2.3562 0.2567 8.2063 44 1 0.9448 -2.1381 9.6254 45 1 1.8850 -0.6726 9.0171 46 1 -0.0398 0.8398 9.6839 47 1 -0.9806 -0.6253 10.2924 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431168109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:26 Heat of formation + Delta-G solvation = -111.918653 kcal Electronic energy + Delta-G solvation = -24282.305848 eV Core-core repulsion = 20849.673773 eV Total energy + Delta-G solvation = -3432.632075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97703 -40.14620 -38.76749 -37.28205 -35.08608 -33.95753 -33.51468 -31.18936 -29.66673 -27.41905 -27.01495 -26.43902 -23.31005 -23.10740 -22.24098 -21.64020 -21.44958 -20.73797 -18.85235 -18.18585 -17.69532 -17.05466 -16.72980 -16.15995 -15.81992 -15.63532 -15.48465 -15.23894 -15.11601 -14.69121 -14.55956 -14.38077 -14.08525 -13.98041 -13.56355 -13.39839 -13.14906 -12.87234 -12.79166 -12.65368 -12.47457 -12.22578 -12.01036 -11.90201 -11.78223 -11.52211 -11.50082 -11.33417 -11.20164 -10.90083 -10.57935 -10.53118 -10.39228 -10.27896 -9.94834 -8.51347 -6.28942 1.56507 1.59122 1.63636 1.78294 1.88634 2.59414 2.96058 3.23463 3.29607 3.67580 3.76054 3.84300 3.99488 4.05605 4.12217 4.20015 4.25040 4.28371 4.30325 4.35235 4.44606 4.49340 4.52853 4.53409 4.56277 4.75269 4.80136 4.83831 4.90084 4.96984 5.05522 5.05790 5.12770 5.17945 5.28353 5.30252 5.30987 5.36822 5.40774 5.44628 5.51849 5.54327 6.13620 6.18474 6.26611 6.66116 6.70186 7.27986 7.54874 8.86415 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.003274 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.320716 B = 8549.056536 C = 9194.379947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.061 0.939 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.141 4.141 8 C 0.087 3.913 9 H 0.076 0.924 10 O -0.385 6.385 11 C 0.055 3.945 12 C 0.500 3.500 13 O -0.588 6.588 14 N -0.692 5.692 15 C 0.174 3.826 16 C -0.020 4.020 17 C -0.573 4.573 18 H 0.058 0.942 19 C -0.021 4.021 20 N -0.933 5.933 21 Si 1.112 2.888 22 H -0.264 1.264 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.161 4.161 26 C -0.180 4.180 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.413 0.587 41 H 0.022 0.978 42 H 0.042 0.958 43 H 0.263 0.737 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.750 -6.464 -17.152 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.179 4.179 8 C 0.030 3.970 9 H 0.094 0.906 10 O -0.304 6.304 11 C -0.024 4.024 12 C 0.287 3.713 13 O -0.468 6.468 14 N -0.344 5.344 15 C 0.049 3.951 16 C -0.020 4.020 17 C -0.610 4.610 18 H 0.076 0.924 19 C -0.221 4.221 20 N -0.569 5.569 21 Si 0.936 3.064 22 H -0.188 1.188 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.198 4.198 26 C -0.218 4.218 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.250 0.750 41 H 0.040 0.960 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.997 -5.809 -17.188 21.750 hybrid contribution 1.269 0.469 0.586 1.474 sum 13.265 -5.340 -16.602 21.911 Atomic orbital electron populations 1.21759 0.95202 1.01975 1.01302 1.21209 0.95798 0.99816 0.93761 0.92070 1.21565 0.95907 1.00940 0.95956 1.21588 0.95113 1.00909 0.98319 1.21492 1.00975 0.99461 0.93064 1.22047 0.94838 1.01411 0.99588 1.22445 0.93947 0.96315 0.84317 0.90609 1.88025 1.86976 1.35290 1.20125 1.22230 1.02848 0.92138 0.85227 1.21065 0.77566 0.88155 0.84535 1.90653 1.54392 1.17697 1.84102 1.45635 1.65451 1.12949 1.10328 1.20646 0.95506 0.92561 0.86389 1.19340 0.98394 0.97369 0.86947 1.21515 0.92027 0.96347 1.51124 0.92372 1.27023 0.99886 1.02310 0.92913 1.70778 1.39235 1.00303 1.46561 0.82994 0.73894 0.72891 0.76662 1.18809 1.21734 1.21240 1.22944 0.92512 0.99845 1.04522 1.22673 1.01633 0.97246 1.00226 0.94757 0.91648 0.92082 0.90865 0.90606 0.90182 0.92399 0.90886 0.90755 0.92534 0.91432 0.87422 0.88292 0.75021 0.95974 0.93930 0.92637 0.89302 0.88815 0.90408 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.05 71.98 0.65 -2.53 16 2 C -0.09 -1.76 2.46 -10.79 -0.03 -1.78 16 3 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.11 -1.46 5.20 30.59 0.16 -1.30 16 5 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 6 C -0.11 -1.43 5.92 30.60 0.18 -1.25 16 7 C -0.14 -2.54 5.54 30.59 0.17 -2.37 16 8 C 0.09 1.85 2.04 30.59 0.06 1.92 16 9 H 0.08 1.37 7.79 -2.39 -0.02 1.35 16 10 O -0.39 -11.72 8.84 -129.94 -1.15 -12.87 16 11 C 0.05 1.52 6.23 71.24 0.44 1.96 16 12 C 0.50 19.43 7.91 87.66 0.69 20.12 16 13 O -0.59 -28.84 16.49 16.03 0.26 -28.57 16 14 N -0.69 -26.77 5.36 -463.06 -2.48 -29.25 16 15 C 0.17 7.90 5.49 86.38 0.47 8.37 16 16 C -0.02 -0.90 1.03 -52.93 -0.05 -0.96 16 17 C -0.57 -28.98 8.26 25.60 0.21 -28.77 16 18 H 0.06 2.84 7.82 -2.91 -0.02 2.82 16 19 C -0.02 -1.13 5.39 84.66 0.46 -0.68 16 20 N -0.93 -55.17 13.46 21.45 0.29 -54.88 16 21 Si 1.11 48.13 29.91 68.60 2.05 50.18 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 25 C -0.16 -6.23 9.93 30.62 0.30 -5.93 16 26 C -0.18 -7.97 8.90 30.62 0.27 -7.70 16 27 H 0.03 0.97 7.68 -2.38 -0.02 0.95 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.15 7.87 -2.39 -0.02 1.13 16 38 H 0.11 2.22 7.87 -2.39 -0.02 2.20 16 39 H 0.10 2.30 8.09 -2.38 -0.02 2.29 16 40 H 0.41 13.94 8.16 -92.71 -0.76 13.18 16 41 H 0.02 1.18 7.51 -2.39 -0.02 1.17 16 42 H 0.04 1.87 8.10 -2.38 -0.02 1.85 16 43 H 0.26 15.83 6.13 -92.71 -0.57 15.26 16 44 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 45 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.07 3.18 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -69.31 375.65 3.52 -65.78 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.37 Total: 31.81 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 4.18 Total: -22.20 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.19 Total: -84.13 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -0.88 Total: -41.44 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.05 Total: 50.18 kcal Total: -69.31 3.52 -65.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431168109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.134 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds