Wall clock time and date at job start Tue Mar 31 2020 07:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.52997 * 109.46968 * 239.99775 * 2 1 3 5 5 C 1.53008 * 109.47221 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46609 * 60.00378 * 5 4 2 7 7 C 1.52997 * 109.47020 * 299.99745 * 6 5 4 8 8 C 1.53000 * 109.47137 * 120.00355 * 2 1 3 9 9 H 1.09006 * 109.47205 * 300.00029 * 8 2 1 10 10 O 1.42898 * 109.47587 * 59.99558 * 8 2 1 11 11 C 1.42895 * 114.00520 * 209.99971 * 10 8 2 12 12 C 1.50698 * 109.47416 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99910 * 359.06941 * 12 11 10 14 14 N 1.34770 * 120.00403 * 179.06362 * 12 11 10 15 15 C 1.46499 * 120.00497 * 185.13067 * 14 12 11 16 16 C 1.53001 * 109.47190 * 184.32793 * 15 14 12 17 17 C 1.50701 * 115.54921 * 64.91518 * 16 15 14 18 18 H 1.07998 * 119.99483 * 266.71374 * 17 16 15 19 19 C 1.37876 * 120.00169 * 86.72567 * 17 16 15 20 20 N 1.31518 * 119.99795 * 180.75930 * 19 17 16 21 21 Si 1.86801 * 120.00061 * 0.74753 * 19 17 16 22 22 H 1.48500 * 109.46888 * 84.92951 * 21 19 17 23 23 H 1.48495 * 109.47235 * 204.93114 * 21 19 17 24 24 H 1.48505 * 109.47167 * 324.92977 * 21 19 17 25 25 C 1.52996 * 117.49961 * 279.23769 * 16 15 14 26 26 C 1.53000 * 117.49594 * 210.58080 * 16 15 14 27 27 H 1.08999 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47097 * 299.99549 * 1 2 3 29 29 H 1.08996 * 109.47189 * 59.99576 * 1 2 3 30 30 H 1.09006 * 109.47121 * 60.00225 * 4 2 1 31 31 H 1.08998 * 109.47757 * 300.00182 * 4 2 1 32 32 H 1.08997 * 109.47129 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.46991 * 300.00758 * 5 4 2 34 34 H 1.08998 * 109.47133 * 60.00467 * 6 5 4 35 35 H 1.08999 * 109.46442 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47757 * 300.00340 * 7 6 5 37 37 H 1.08999 * 109.47061 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47350 * 300.00206 * 11 10 8 39 39 H 1.09010 * 109.46907 * 60.00168 * 11 10 8 40 40 H 0.97004 * 119.99765 * 5.13548 * 14 12 11 41 41 H 1.09005 * 109.46819 * 304.32780 * 15 14 12 42 42 H 1.08999 * 109.47168 * 64.32725 * 15 14 12 43 43 H 0.96999 * 119.99809 * 179.97438 * 20 19 17 44 44 H 1.09001 * 117.50052 * 0.02562 * 25 16 15 45 45 H 1.09001 * 117.49918 * 145.02076 * 25 16 15 46 46 H 1.09002 * 117.50223 * 214.98435 * 26 16 15 47 47 H 1.09000 * 117.50490 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7204 1.2489 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -0.2075 2.1393 10 8 1.5637 -2.0686 1.2493 11 6 1.3700 -2.6166 2.5546 12 6 0.8686 -4.0327 2.4357 13 8 0.6782 -4.5187 1.3409 14 7 0.6318 -4.7594 3.5458 15 6 0.2528 -6.1698 3.4311 16 6 -0.0610 -6.7282 4.8206 17 6 -1.2572 -6.1232 5.5092 18 1 -1.1278 -5.2894 6.1832 19 6 -2.5168 -6.6345 5.2789 20 7 -3.5625 -6.0970 5.8683 21 14 -2.7382 -8.0903 4.1296 22 1 -2.5170 -9.3521 4.8808 23 1 -4.1160 -8.0789 3.5760 24 1 -1.7574 -7.9974 3.0184 25 6 1.1209 -7.1482 5.6967 26 6 0.2195 -8.2122 5.0655 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6766 -0.2074 -2.1392 31 1 1.6766 -1.7489 -1.2493 32 1 3.9333 -1.2342 -2.1398 33 1 3.9330 0.3070 -1.2497 34 1 3.7175 -2.4695 -0.0002 35 1 5.1705 -1.4417 -0.0008 36 1 3.9335 0.3073 1.2487 37 1 3.9338 -1.2343 2.1389 38 1 2.3162 -2.6101 3.0955 39 1 0.6380 -2.0167 3.0956 40 1 0.7123 -4.3484 4.4207 41 1 -0.6288 -6.2587 2.7962 42 1 1.0759 -6.7326 2.9908 43 1 -4.4487 -6.4564 5.7060 44 1 2.1221 -7.0264 5.2833 45 1 1.0332 -6.9873 6.7712 46 1 -0.4610 -8.7509 5.7249 47 1 0.6272 -8.7908 4.2366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431168110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:30 Heat of formation + Delta-G solvation = -83.074577 kcal Electronic energy + Delta-G solvation = -24564.935579 eV Core-core repulsion = 21133.554277 eV Total energy + Delta-G solvation = -3431.381302 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85501 -38.90008 -37.09637 -35.87249 -33.43121 -32.69207 -32.14736 -30.34690 -28.49003 -26.39955 -25.96857 -24.75256 -22.61465 -21.78280 -21.46889 -19.98124 -19.68973 -19.22828 -17.09062 -16.50830 -16.22315 -15.99095 -15.33430 -15.04554 -14.88110 -14.69874 -14.29925 -13.87487 -13.72007 -13.30596 -13.20640 -13.02772 -12.75162 -12.44993 -12.43264 -12.22677 -12.00945 -11.66116 -11.58964 -11.57658 -11.18457 -10.94367 -10.79205 -10.58761 -10.51844 -10.49672 -10.21242 -10.06711 -9.72995 -9.45715 -9.32913 -9.20718 -8.68303 -8.58855 -8.30755 -6.17629 -4.22539 3.08657 3.15959 3.28439 3.38597 3.43665 4.17323 4.38809 4.54510 4.59553 4.70917 4.86328 5.01085 5.04524 5.08808 5.12249 5.23005 5.26868 5.32782 5.35965 5.40795 5.43350 5.55231 5.66089 5.70365 5.74535 5.83600 5.86690 5.98840 6.03787 6.04315 6.08870 6.18436 6.20147 6.20776 6.31034 6.39072 6.46618 6.49554 6.67817 6.97244 7.04235 7.07233 7.21443 7.65525 8.13730 8.38571 8.75894 8.81869 9.45533 10.93700 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.003422 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.289086 B = 8180.688038 C = 8606.830389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.141 4.141 8 C 0.090 3.910 9 H 0.060 0.940 10 O -0.346 6.346 11 C 0.043 3.957 12 C 0.508 3.492 13 O -0.536 6.536 14 N -0.702 5.702 15 C 0.158 3.842 16 C -0.016 4.016 17 C -0.491 4.491 18 H 0.078 0.922 19 C 0.081 3.919 20 N -0.895 5.895 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.259 1.259 25 C -0.178 4.178 26 C -0.194 4.194 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.403 0.597 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.266 0.734 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.670 11.873 -8.523 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.178 4.178 8 C 0.032 3.968 9 H 0.078 0.922 10 O -0.264 6.264 11 C -0.037 4.037 12 C 0.292 3.708 13 O -0.412 6.412 14 N -0.354 5.354 15 C 0.034 3.966 16 C -0.017 4.017 17 C -0.528 4.528 18 H 0.096 0.904 19 C -0.123 4.123 20 N -0.532 5.532 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.221 1.221 24 H -0.183 1.183 25 C -0.216 4.216 26 C -0.232 4.232 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.237 0.763 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.293 11.399 -9.469 19.907 hybrid contribution -0.194 -0.476 0.263 0.577 sum 13.099 10.924 -9.207 19.382 Atomic orbital electron populations 1.21804 0.94606 1.03076 1.01117 1.21195 0.96303 0.98291 0.94376 0.90541 1.21540 0.95096 1.01996 0.96461 1.21509 0.95999 1.00027 0.97885 1.21428 0.99335 1.00676 0.93923 1.22034 0.95948 1.00962 0.98885 1.22179 0.93034 0.83420 0.98135 0.92159 1.88048 1.86299 1.27079 1.24970 1.22260 1.00865 0.93662 0.86881 1.20131 0.78693 0.87024 0.84946 1.90683 1.51672 1.72186 1.26706 1.45720 1.68941 1.12313 1.08386 1.21151 0.98410 0.79343 0.97677 1.19628 0.96513 0.93301 0.92276 1.20168 0.88163 1.17638 1.26851 0.90393 1.24963 0.95681 0.96656 0.94965 1.69879 0.98993 1.41326 1.42969 0.86864 0.77193 0.83101 0.82071 1.20207 1.22087 1.18335 1.22841 0.94053 1.05297 0.99363 1.22972 1.04152 0.93061 1.03032 0.91309 0.93022 0.92884 0.92433 0.90509 0.92214 0.92587 0.90840 0.92573 0.91307 0.91875 0.90850 0.90471 0.76250 0.91460 0.93968 0.92431 0.90878 0.89380 0.89055 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.05 37.16 0.34 -1.25 16 2 C -0.08 -0.83 2.55 -90.62 -0.23 -1.06 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -1.19 5.06 -26.73 -0.14 -1.32 16 5 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 6 C -0.12 -1.17 5.78 -26.73 -0.15 -1.33 16 7 C -0.14 -1.32 5.63 -26.71 -0.15 -1.47 16 8 C 0.09 0.97 2.35 -26.70 -0.06 0.90 16 9 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 10 O -0.35 -4.92 7.50 -55.14 -0.41 -5.33 16 11 C 0.04 0.59 6.23 36.00 0.22 0.81 16 12 C 0.51 9.27 7.90 -10.99 -0.09 9.18 16 13 O -0.54 -12.02 16.49 -14.35 -0.24 -12.25 16 14 N -0.70 -12.88 5.45 -60.29 -0.33 -13.21 16 15 C 0.16 3.31 5.22 -4.04 -0.02 3.29 16 16 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 17 C -0.49 -12.79 9.29 -34.44 -0.32 -13.11 16 18 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 19 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 20 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 21 Si 0.88 21.51 24.77 -169.99 -4.21 17.30 16 22 H -0.28 -6.54 7.02 56.52 0.40 -6.15 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.26 -6.16 5.96 56.52 0.34 -5.82 16 25 C -0.18 -3.33 9.96 -26.70 -0.27 -3.60 16 26 C -0.19 -3.95 7.60 -26.70 -0.20 -4.15 16 27 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.01 7.68 -51.93 -0.40 0.61 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 39 H 0.08 0.93 8.09 -51.92 -0.42 0.51 16 40 H 0.40 6.63 8.44 -40.82 -0.34 6.29 16 41 H 0.07 1.60 6.71 -51.93 -0.35 1.26 16 42 H 0.04 0.85 8.09 -51.93 -0.42 0.42 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 46 H 0.09 1.95 7.10 -51.93 -0.37 1.58 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -31.12 368.06 -8.93 -40.05 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.60 Total: 6.23 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.46 Total: -12.70 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.44 Total: -38.85 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.65 Total: -17.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.21 Total: 17.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.12 -8.93 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431168110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.023 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds