Wall clock time and date at job start Tue Mar 31 2020 07:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.52997 * 109.46968 * 239.99775 * 2 1 3 5 5 C 1.53008 * 109.47221 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46609 * 60.00378 * 5 4 2 7 7 C 1.52997 * 109.47020 * 299.99745 * 6 5 4 8 8 C 1.53000 * 109.47137 * 120.00355 * 2 1 3 9 9 H 1.09006 * 109.47205 * 300.00029 * 8 2 1 10 10 O 1.42898 * 109.47587 * 59.99558 * 8 2 1 11 11 C 1.42895 * 114.00520 * 209.99971 * 10 8 2 12 12 C 1.50698 * 109.47416 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99910 * 359.06941 * 12 11 10 14 14 N 1.34770 * 120.00403 * 179.06362 * 12 11 10 15 15 C 1.46499 * 120.00497 * 185.13067 * 14 12 11 16 16 C 1.53001 * 109.47190 * 184.32793 * 15 14 12 17 17 C 1.50701 * 115.54921 * 64.91518 * 16 15 14 18 18 H 1.07998 * 119.99483 * 266.71374 * 17 16 15 19 19 C 1.37876 * 120.00169 * 86.72567 * 17 16 15 20 20 N 1.31518 * 119.99795 * 180.75930 * 19 17 16 21 21 Si 1.86801 * 120.00061 * 0.74753 * 19 17 16 22 22 H 1.48500 * 109.46888 * 84.92951 * 21 19 17 23 23 H 1.48495 * 109.47235 * 204.93114 * 21 19 17 24 24 H 1.48505 * 109.47167 * 324.92977 * 21 19 17 25 25 C 1.52996 * 117.49961 * 279.23769 * 16 15 14 26 26 C 1.53000 * 117.49594 * 210.58080 * 16 15 14 27 27 H 1.08999 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47097 * 299.99549 * 1 2 3 29 29 H 1.08996 * 109.47189 * 59.99576 * 1 2 3 30 30 H 1.09006 * 109.47121 * 60.00225 * 4 2 1 31 31 H 1.08998 * 109.47757 * 300.00182 * 4 2 1 32 32 H 1.08997 * 109.47129 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.46991 * 300.00758 * 5 4 2 34 34 H 1.08998 * 109.47133 * 60.00467 * 6 5 4 35 35 H 1.08999 * 109.46442 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47757 * 300.00340 * 7 6 5 37 37 H 1.08999 * 109.47061 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47350 * 300.00206 * 11 10 8 39 39 H 1.09010 * 109.46907 * 60.00168 * 11 10 8 40 40 H 0.97004 * 119.99765 * 5.13548 * 14 12 11 41 41 H 1.09005 * 109.46819 * 304.32780 * 15 14 12 42 42 H 1.08999 * 109.47168 * 64.32725 * 15 14 12 43 43 H 0.96999 * 119.99809 * 179.97438 * 20 19 17 44 44 H 1.09001 * 117.50052 * 0.02562 * 25 16 15 45 45 H 1.09001 * 117.49918 * 145.02076 * 25 16 15 46 46 H 1.09002 * 117.50223 * 214.98435 * 26 16 15 47 47 H 1.09000 * 117.50490 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7204 1.2489 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -0.2075 2.1393 10 8 1.5637 -2.0686 1.2493 11 6 1.3700 -2.6166 2.5546 12 6 0.8686 -4.0327 2.4357 13 8 0.6782 -4.5187 1.3409 14 7 0.6318 -4.7594 3.5458 15 6 0.2528 -6.1698 3.4311 16 6 -0.0610 -6.7282 4.8206 17 6 -1.2572 -6.1232 5.5092 18 1 -1.1278 -5.2894 6.1832 19 6 -2.5168 -6.6345 5.2789 20 7 -3.5625 -6.0970 5.8683 21 14 -2.7382 -8.0903 4.1296 22 1 -2.5170 -9.3521 4.8808 23 1 -4.1160 -8.0789 3.5760 24 1 -1.7574 -7.9974 3.0184 25 6 1.1209 -7.1482 5.6967 26 6 0.2195 -8.2122 5.0655 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6766 -0.2074 -2.1392 31 1 1.6766 -1.7489 -1.2493 32 1 3.9333 -1.2342 -2.1398 33 1 3.9330 0.3070 -1.2497 34 1 3.7175 -2.4695 -0.0002 35 1 5.1705 -1.4417 -0.0008 36 1 3.9335 0.3073 1.2487 37 1 3.9338 -1.2343 2.1389 38 1 2.3162 -2.6101 3.0955 39 1 0.6380 -2.0167 3.0956 40 1 0.7123 -4.3484 4.4207 41 1 -0.6288 -6.2587 2.7962 42 1 1.0759 -6.7326 2.9908 43 1 -4.4487 -6.4564 5.7060 44 1 2.1221 -7.0264 5.2833 45 1 1.0332 -6.9873 6.7712 46 1 -0.4610 -8.7509 5.7249 47 1 0.6272 -8.7908 4.2366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431168110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:29 Heat of formation + Delta-G solvation = -102.043333 kcal Electronic energy + Delta-G solvation = -24565.758126 eV Core-core repulsion = 21133.554277 eV Total energy + Delta-G solvation = -3432.203849 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96453 -40.15230 -38.71770 -36.87794 -35.02058 -34.22180 -33.47404 -31.18467 -29.76834 -27.99182 -27.09991 -26.33527 -23.41015 -23.35035 -22.27067 -21.45111 -21.00484 -20.50785 -18.70126 -17.92986 -17.49325 -17.13201 -16.87361 -16.29152 -16.23295 -15.89140 -15.46913 -15.09486 -14.88927 -14.72101 -14.45788 -14.42657 -14.03191 -13.92594 -13.64511 -13.46168 -13.11111 -13.00866 -12.65887 -12.51419 -12.43026 -12.40061 -12.18594 -12.00811 -11.74389 -11.61357 -11.40879 -11.34861 -11.00375 -10.88630 -10.82322 -10.66309 -10.35538 -10.31309 -9.90668 -8.31459 -6.37215 1.32016 1.38331 1.47043 1.65611 1.94485 2.34884 3.00770 3.05706 3.30482 3.74159 3.83001 3.90067 3.93966 4.03084 4.21522 4.24697 4.28728 4.31120 4.36737 4.41647 4.45179 4.50610 4.57700 4.62651 4.66035 4.78710 4.82666 4.87119 4.93089 4.97388 5.07556 5.09723 5.10545 5.24276 5.30112 5.32136 5.37153 5.43585 5.47343 5.48825 5.55436 5.64232 5.69011 6.25451 6.27616 6.68888 6.74105 7.31938 7.34204 8.83111 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.003422 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.289086 B = 8180.688038 C = 8606.830389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.104 0.896 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.137 4.137 8 C 0.082 3.918 9 H 0.077 0.923 10 O -0.374 6.374 11 C 0.051 3.949 12 C 0.503 3.497 13 O -0.584 6.584 14 N -0.699 5.699 15 C 0.166 3.834 16 C -0.041 4.041 17 C -0.477 4.477 18 H 0.049 0.951 19 C 0.027 3.973 20 N -0.944 5.944 21 Si 0.927 3.073 22 H -0.261 1.261 23 H -0.304 1.304 24 H -0.250 1.250 25 C -0.147 4.147 26 C -0.196 4.196 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.413 0.587 41 H 0.032 0.968 42 H 0.057 0.943 43 H 0.264 0.736 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.384 12.954 -8.560 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 H 0.122 0.878 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.174 4.174 8 C 0.025 3.975 9 H 0.095 0.905 10 O -0.293 6.293 11 C -0.028 4.028 12 C 0.290 3.710 13 O -0.464 6.464 14 N -0.350 5.350 15 C 0.041 3.959 16 C -0.042 4.042 17 C -0.515 4.515 18 H 0.067 0.933 19 C -0.171 4.171 20 N -0.583 5.583 21 Si 0.753 3.247 22 H -0.185 1.185 23 H -0.232 1.232 24 H -0.173 1.173 25 C -0.184 4.184 26 C -0.234 4.234 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.249 0.751 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.041 12.486 -9.480 22.429 hybrid contribution -1.004 -0.745 0.284 1.282 sum 15.037 11.741 -9.196 21.178 Atomic orbital electron populations 1.21774 0.95508 1.01037 1.02072 1.21265 0.95541 0.99490 0.93791 0.87768 1.21506 0.96155 0.99946 0.97430 1.21503 0.94881 1.01183 0.97556 1.21416 1.00101 0.99008 0.94917 1.22039 0.94714 1.02276 0.98416 1.22457 0.94097 0.81877 0.99083 0.90490 1.88045 1.86857 1.29116 1.25296 1.22237 1.02686 0.90486 0.87398 1.21007 0.77445 0.88682 0.83888 1.90658 1.53714 1.73593 1.28460 1.45690 1.68590 1.11597 1.09153 1.20873 0.97496 0.81084 0.96413 1.19443 0.96866 0.94784 0.93109 1.20372 0.89617 1.16171 1.25320 0.93312 1.25674 0.95746 0.99159 0.96521 1.70004 0.99455 1.43400 1.45464 0.86089 0.76647 0.81108 0.80834 1.18541 1.23184 1.17343 1.22883 0.94335 1.02217 0.98964 1.23039 1.04417 0.92220 1.03734 0.94753 0.92168 0.91862 0.91491 0.94289 0.92365 0.90361 0.94186 0.91226 0.88856 0.91515 0.87535 0.88656 0.75080 0.95005 0.92497 0.92697 0.87629 0.89349 0.90294 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.05 71.98 0.65 -2.37 16 2 C -0.08 -1.50 2.55 -10.79 -0.03 -1.52 16 3 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -2.29 5.06 30.60 0.15 -2.13 16 5 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 6 C -0.12 -2.17 5.78 30.59 0.18 -1.99 16 7 C -0.14 -2.16 5.63 30.61 0.17 -1.99 16 8 C 0.08 1.58 2.35 30.61 0.07 1.65 16 9 H 0.08 1.22 7.79 -2.38 -0.02 1.20 16 10 O -0.37 -10.43 7.50 -129.94 -0.97 -11.40 16 11 C 0.05 1.32 6.23 71.24 0.44 1.76 16 12 C 0.50 18.22 7.90 87.66 0.69 18.91 16 13 O -0.58 -26.83 16.49 15.99 0.26 -26.57 16 14 N -0.70 -25.07 5.45 -463.06 -2.53 -27.60 16 15 C 0.17 6.83 5.22 86.38 0.45 7.28 16 16 C -0.04 -1.72 0.85 -52.93 -0.04 -1.77 16 17 C -0.48 -25.05 9.29 25.60 0.24 -24.82 16 18 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 19 C 0.03 1.53 5.47 84.65 0.46 1.99 16 20 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 21 Si 0.93 44.68 24.77 68.60 1.70 46.38 16 22 H -0.26 -11.78 7.02 99.48 0.70 -11.09 16 23 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 24 H -0.25 -11.56 5.96 99.48 0.59 -10.96 16 25 C -0.15 -5.03 9.96 30.62 0.30 -4.73 16 26 C -0.20 -7.46 7.60 30.62 0.23 -7.23 16 27 H 0.03 0.93 7.68 -2.39 -0.02 0.91 16 28 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.04 1.08 7.68 -2.39 -0.02 1.06 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.04 1.00 7.68 -2.39 -0.02 0.99 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.01 7.87 -2.39 -0.02 0.99 16 38 H 0.11 2.02 7.87 -2.39 -0.02 2.00 16 39 H 0.10 2.10 8.09 -2.38 -0.02 2.08 16 40 H 0.41 13.06 8.44 -92.71 -0.78 12.28 16 41 H 0.03 1.53 6.71 -2.38 -0.02 1.51 16 42 H 0.06 2.18 8.09 -2.39 -0.02 2.16 16 43 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.08 3.21 7.10 -2.39 -0.02 3.19 16 47 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -70.63 368.06 2.95 -67.68 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.02 Total: 27.29 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 4.16 Total: -18.69 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.23 Total: -84.68 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.71 Total: -37.97 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.70 Total: 46.38 kcal Total: -70.63 2.95 -67.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431168110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.360 kcal (2) G-P(sol) polarization free energy of solvation -70.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds