Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47086 * 2 1 4 4 C 1.53004 * 109.47403 * 119.99627 * 2 1 3 5 5 C 1.52995 * 109.47223 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47232 * 299.99621 * 5 4 2 7 7 C 1.53004 * 109.46707 * 60.00062 * 6 5 4 8 8 C 1.52995 * 109.47223 * 299.99943 * 7 6 5 9 9 H 1.09010 * 109.47061 * 179.97438 * 8 7 6 10 10 O 1.42894 * 109.47595 * 300.00059 * 8 7 6 11 11 C 1.42905 * 114.00138 * 270.00054 * 10 8 7 12 12 C 1.50698 * 109.47247 * 179.97438 * 11 10 8 13 13 O 1.21279 * 119.99751 * 5.18227 * 12 11 10 14 14 N 1.34771 * 119.99942 * 185.17907 * 12 11 10 15 15 C 1.46498 * 119.99823 * 175.10504 * 14 12 11 16 16 C 1.53004 * 109.47253 * 185.83826 * 15 14 12 17 17 C 1.50706 * 115.55967 * 33.22093 * 16 15 14 18 18 H 1.08009 * 119.99663 * 265.32850 * 17 16 15 19 19 C 1.37871 * 120.00345 * 85.32730 * 17 16 15 20 20 N 1.31507 * 120.00328 * 180.87496 * 19 17 16 21 21 Si 1.86806 * 119.99754 * 0.86995 * 19 17 16 22 22 H 1.48494 * 109.46860 * 92.23647 * 21 19 17 23 23 H 1.48500 * 109.46829 * 212.23207 * 21 19 17 24 24 H 1.48499 * 109.47209 * 332.23395 * 21 19 17 25 25 C 1.52997 * 117.50352 * 247.53042 * 16 15 14 26 26 C 1.52993 * 117.50286 * 178.90515 * 16 15 14 27 27 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47446 * 300.00204 * 1 2 3 29 29 H 1.08998 * 109.47635 * 60.00166 * 1 2 3 30 30 H 1.09001 * 109.47155 * 59.99864 * 4 2 1 31 31 H 1.09003 * 109.46710 * 300.00010 * 4 2 1 32 32 H 1.09010 * 109.47061 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47428 * 59.99710 * 5 4 2 34 34 H 1.09001 * 109.47436 * 300.00646 * 6 5 4 35 35 H 1.08992 * 109.47288 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.46957 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47155 * 60.00400 * 7 6 5 38 38 H 1.09004 * 109.46518 * 59.99804 * 11 10 8 39 39 H 1.08998 * 109.47221 * 300.00109 * 11 10 8 40 40 H 0.96998 * 120.00232 * 355.09984 * 14 12 11 41 41 H 1.09000 * 109.47792 * 65.84194 * 15 14 12 42 42 H 1.09003 * 109.47228 * 305.83532 * 15 14 12 43 43 H 0.96999 * 120.00528 * 179.97438 * 20 19 17 44 44 H 1.08998 * 117.49427 * 0.02562 * 25 16 15 45 45 H 1.09002 * 117.50002 * 145.01378 * 25 16 15 46 46 H 1.08999 * 117.50270 * 214.98338 * 26 16 15 47 47 H 1.09003 * 117.49663 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5704 -0.7204 -1.2489 8 6 2.0405 -0.7210 -1.2492 9 1 1.6771 -0.2068 -2.1390 10 8 1.5645 -2.0684 -1.2493 11 6 1.3712 -2.6164 -2.5549 12 6 0.8714 -4.0331 -2.4361 13 8 0.6083 -4.4938 -1.3455 14 7 0.7168 -4.7881 -3.5418 15 6 0.3344 -6.1969 -3.4191 16 6 0.3690 -6.8568 -4.7991 17 6 1.4216 -6.3351 -5.7431 18 1 1.1733 -5.5608 -6.4541 19 6 2.7014 -6.8460 -5.6992 20 7 3.6242 -6.3786 -6.5112 21 14 3.1245 -8.2020 -4.4861 22 1 2.9366 -9.5239 -5.1360 23 1 4.5387 -8.0582 -4.0564 24 1 2.2346 -8.1019 -3.3015 25 6 -0.9645 -7.3008 -5.4036 26 6 0.0233 -8.3450 -4.8795 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6767 -1.7488 1.2494 31 1 1.6766 -0.2072 2.1392 32 1 3.9333 -1.2348 2.1394 33 1 3.9330 0.3072 1.2497 34 1 3.7175 -2.4694 0.0002 35 1 5.1704 -1.4416 0.0008 36 1 3.9345 -1.2338 -2.1388 37 1 3.9334 0.3073 -1.2488 38 1 2.3177 -2.6094 -3.0956 39 1 0.6393 -2.0167 -3.0959 40 1 0.8587 -4.3986 -4.4187 41 1 -0.6731 -6.2656 -3.0088 42 1 1.0327 -6.7065 -2.7551 43 1 4.5247 -6.7378 -6.4800 44 1 -1.8665 -7.1225 -4.8184 45 1 -1.0806 -7.2155 -6.4841 46 1 0.5571 -8.9467 -5.6151 47 1 -0.2292 -8.8540 -3.9492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431168111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -83.498066 kcal Electronic energy + Delta-G solvation = -24780.880726 eV Core-core repulsion = 21349.481060 eV Total energy + Delta-G solvation = -3431.399665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77116 -38.81722 -37.06678 -35.79232 -33.34408 -32.63699 -32.22475 -30.26593 -28.40959 -26.32769 -25.89379 -24.82017 -22.53954 -21.72534 -21.40604 -19.87793 -19.61356 -19.21634 -16.93933 -16.46472 -16.19258 -15.90447 -15.27252 -15.06074 -14.85685 -14.45032 -14.30544 -13.82280 -13.68410 -13.32632 -13.08750 -12.91967 -12.76622 -12.47749 -12.31546 -12.27123 -12.05806 -11.59742 -11.55344 -11.50696 -11.19417 -10.88744 -10.70682 -10.54679 -10.51441 -10.43670 -10.24124 -9.99465 -9.67323 -9.37056 -9.33328 -9.11018 -8.73684 -8.61659 -8.14936 -6.24220 -4.29991 3.12620 3.24604 3.33926 3.35641 3.41688 4.29592 4.34870 4.62342 4.67317 4.77476 4.85829 5.05172 5.08343 5.11874 5.20257 5.33395 5.36246 5.43035 5.46606 5.49422 5.52097 5.61267 5.70932 5.76044 5.78606 5.89926 5.92214 5.95804 6.06582 6.10778 6.15505 6.25534 6.27540 6.29492 6.34727 6.43297 6.51176 6.53170 6.68340 6.87397 7.05140 7.17415 7.30805 7.63008 8.30369 8.33234 8.75211 8.88233 9.39801 10.86120 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.003883 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.307516 B = 7209.856130 C = 7798.446954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.142 4.142 8 C 0.091 3.909 9 H 0.060 0.940 10 O -0.347 6.347 11 C 0.043 3.957 12 C 0.507 3.493 13 O -0.544 6.544 14 N -0.696 5.696 15 C 0.155 3.845 16 C -0.016 4.016 17 C -0.495 4.495 18 H 0.079 0.921 19 C 0.086 3.914 20 N -0.892 5.892 21 Si 0.876 3.124 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.254 1.254 25 C -0.178 4.178 26 C -0.196 4.196 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.411 0.589 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.266 0.734 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 12.535 9.941 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.180 4.180 8 C 0.033 3.967 9 H 0.078 0.922 10 O -0.265 6.265 11 C -0.037 4.037 12 C 0.291 3.709 13 O -0.422 6.422 14 N -0.349 5.349 15 C 0.031 3.969 16 C -0.017 4.017 17 C -0.532 4.532 18 H 0.097 0.903 19 C -0.118 4.118 20 N -0.528 5.528 21 Si 0.704 3.296 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.178 1.178 25 C -0.216 4.216 26 C -0.233 4.233 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.643 12.080 10.821 16.432 hybrid contribution 0.612 -0.515 -0.274 0.846 sum -2.031 11.565 10.547 15.783 Atomic orbital electron populations 1.21791 0.94784 1.02923 1.00968 1.21193 0.96148 0.98330 0.94492 0.90568 1.21532 0.95208 1.01927 0.96356 1.21509 0.95911 1.00015 0.97958 1.21429 0.99466 1.00689 0.93823 1.22034 0.95878 1.00959 0.99116 1.22152 0.93174 0.83438 0.97932 0.92233 1.88032 1.86307 1.27050 1.25118 1.22265 1.01262 0.93476 0.86710 1.20135 0.78753 0.87124 0.84887 1.90657 1.50632 1.73829 1.27054 1.45852 1.68686 1.11344 1.08972 1.21028 0.98036 0.80504 0.97339 1.19627 0.95770 0.92719 0.93597 1.20142 0.92326 1.22909 1.17825 0.90258 1.24932 0.95985 0.96128 0.94763 1.69876 1.03237 1.42319 1.37383 0.86911 0.77462 0.82456 0.82818 1.20425 1.22051 1.17841 1.22905 0.93048 1.05349 1.00262 1.22954 1.05072 0.93600 1.01708 0.91376 0.92959 0.93135 0.90543 0.92524 0.92249 0.92605 0.90816 0.92496 0.91589 0.91357 0.90402 0.90780 0.75157 0.93562 0.92046 0.92401 0.90821 0.89475 0.89285 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.05 37.15 0.34 -1.19 16 2 C -0.08 -0.87 2.55 -90.62 -0.23 -1.10 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.24 5.06 -26.73 -0.14 -1.38 16 5 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 6 C -0.12 -1.36 5.78 -26.73 -0.15 -1.52 16 7 C -0.14 -1.57 5.63 -26.73 -0.15 -1.72 16 8 C 0.09 1.06 2.35 -26.73 -0.06 1.00 16 9 H 0.06 0.62 7.79 -51.92 -0.40 0.21 16 10 O -0.35 -5.26 7.51 -55.09 -0.41 -5.68 16 11 C 0.04 0.64 6.23 36.00 0.22 0.87 16 12 C 0.51 9.72 7.90 -10.99 -0.09 9.63 16 13 O -0.54 -12.36 16.51 -14.30 -0.24 -12.60 16 14 N -0.70 -13.58 5.28 -60.29 -0.32 -13.90 16 15 C 0.15 3.25 5.57 -4.04 -0.02 3.23 16 16 C -0.02 -0.35 1.22 -155.66 -0.19 -0.54 16 17 C -0.49 -12.44 7.82 -34.44 -0.27 -12.71 16 18 H 0.08 2.13 8.06 -52.48 -0.42 1.71 16 19 C 0.09 2.29 5.47 -17.83 -0.10 2.20 16 20 N -0.89 -25.35 13.96 55.43 0.77 -24.57 16 21 Si 0.88 21.13 25.26 -169.99 -4.29 16.83 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.25 -5.96 5.19 56.52 0.29 -5.67 16 25 C -0.18 -3.41 9.88 -26.73 -0.26 -3.67 16 26 C -0.20 -3.98 7.58 -26.74 -0.20 -4.18 16 27 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 1.06 7.68 -51.93 -0.40 0.66 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.76 7.87 -51.93 -0.41 0.36 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 39 H 0.07 0.91 8.09 -51.93 -0.42 0.50 16 40 H 0.41 7.73 7.32 -40.82 -0.30 7.43 16 41 H 0.05 0.92 7.89 -51.93 -0.41 0.51 16 42 H 0.06 1.41 6.38 -51.93 -0.33 1.08 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 45 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.09 1.89 7.30 -51.93 -0.38 1.51 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -29.75 365.29 -9.02 -38.77 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -8.57 Total: 8.08 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.46 Total: -12.45 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.46 Total: -38.47 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.65 Total: -18.27 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.29 Total: 16.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.75 -9.02 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431168111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.729 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds