Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47086 * 2 1 4 4 C 1.53004 * 109.47403 * 119.99627 * 2 1 3 5 5 C 1.52995 * 109.47223 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47232 * 299.99621 * 5 4 2 7 7 C 1.53004 * 109.46707 * 60.00062 * 6 5 4 8 8 C 1.52995 * 109.47223 * 299.99943 * 7 6 5 9 9 H 1.09010 * 109.47061 * 179.97438 * 8 7 6 10 10 O 1.42894 * 109.47595 * 300.00059 * 8 7 6 11 11 C 1.42905 * 114.00138 * 270.00054 * 10 8 7 12 12 C 1.50698 * 109.47247 * 179.97438 * 11 10 8 13 13 O 1.21279 * 119.99751 * 5.18227 * 12 11 10 14 14 N 1.34771 * 119.99942 * 185.17907 * 12 11 10 15 15 C 1.46498 * 119.99823 * 175.10504 * 14 12 11 16 16 C 1.53004 * 109.47253 * 185.83826 * 15 14 12 17 17 C 1.50706 * 115.55967 * 33.22093 * 16 15 14 18 18 H 1.08009 * 119.99663 * 265.32850 * 17 16 15 19 19 C 1.37871 * 120.00345 * 85.32730 * 17 16 15 20 20 N 1.31507 * 120.00328 * 180.87496 * 19 17 16 21 21 Si 1.86806 * 119.99754 * 0.86995 * 19 17 16 22 22 H 1.48494 * 109.46860 * 92.23647 * 21 19 17 23 23 H 1.48500 * 109.46829 * 212.23207 * 21 19 17 24 24 H 1.48499 * 109.47209 * 332.23395 * 21 19 17 25 25 C 1.52997 * 117.50352 * 247.53042 * 16 15 14 26 26 C 1.52993 * 117.50286 * 178.90515 * 16 15 14 27 27 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47446 * 300.00204 * 1 2 3 29 29 H 1.08998 * 109.47635 * 60.00166 * 1 2 3 30 30 H 1.09001 * 109.47155 * 59.99864 * 4 2 1 31 31 H 1.09003 * 109.46710 * 300.00010 * 4 2 1 32 32 H 1.09010 * 109.47061 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47428 * 59.99710 * 5 4 2 34 34 H 1.09001 * 109.47436 * 300.00646 * 6 5 4 35 35 H 1.08992 * 109.47288 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.46957 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47155 * 60.00400 * 7 6 5 38 38 H 1.09004 * 109.46518 * 59.99804 * 11 10 8 39 39 H 1.08998 * 109.47221 * 300.00109 * 11 10 8 40 40 H 0.96998 * 120.00232 * 355.09984 * 14 12 11 41 41 H 1.09000 * 109.47792 * 65.84194 * 15 14 12 42 42 H 1.09003 * 109.47228 * 305.83532 * 15 14 12 43 43 H 0.96999 * 120.00528 * 179.97438 * 20 19 17 44 44 H 1.08998 * 117.49427 * 0.02562 * 25 16 15 45 45 H 1.09002 * 117.50002 * 145.01378 * 25 16 15 46 46 H 1.08999 * 117.50270 * 214.98338 * 26 16 15 47 47 H 1.09003 * 117.49663 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5704 -0.7204 -1.2489 8 6 2.0405 -0.7210 -1.2492 9 1 1.6771 -0.2068 -2.1390 10 8 1.5645 -2.0684 -1.2493 11 6 1.3712 -2.6164 -2.5549 12 6 0.8714 -4.0331 -2.4361 13 8 0.6083 -4.4938 -1.3455 14 7 0.7168 -4.7881 -3.5418 15 6 0.3344 -6.1969 -3.4191 16 6 0.3690 -6.8568 -4.7991 17 6 1.4216 -6.3351 -5.7431 18 1 1.1733 -5.5608 -6.4541 19 6 2.7014 -6.8460 -5.6992 20 7 3.6242 -6.3786 -6.5112 21 14 3.1245 -8.2020 -4.4861 22 1 2.9366 -9.5239 -5.1360 23 1 4.5387 -8.0582 -4.0564 24 1 2.2346 -8.1019 -3.3015 25 6 -0.9645 -7.3008 -5.4036 26 6 0.0233 -8.3450 -4.8795 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6767 -1.7488 1.2494 31 1 1.6766 -0.2072 2.1392 32 1 3.9333 -1.2348 2.1394 33 1 3.9330 0.3072 1.2497 34 1 3.7175 -2.4694 0.0002 35 1 5.1704 -1.4416 0.0008 36 1 3.9345 -1.2338 -2.1388 37 1 3.9334 0.3073 -1.2488 38 1 2.3177 -2.6094 -3.0956 39 1 0.6393 -2.0167 -3.0959 40 1 0.8587 -4.3986 -4.4187 41 1 -0.6731 -6.2656 -3.0088 42 1 1.0327 -6.7065 -2.7551 43 1 4.5247 -6.7378 -6.4800 44 1 -1.8665 -7.1225 -4.8184 45 1 -1.0806 -7.2155 -6.4841 46 1 0.5571 -8.9467 -5.6151 47 1 -0.2292 -8.8540 -3.9492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431168111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -100.512931 kcal Electronic energy + Delta-G solvation = -24781.618546 eV Core-core repulsion = 21349.481060 eV Total energy + Delta-G solvation = -3432.137485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95457 -40.14856 -38.70612 -36.88356 -34.97269 -34.25715 -33.48111 -31.19934 -29.75527 -27.89925 -27.10846 -26.37892 -23.41419 -23.32554 -22.28076 -21.44305 -20.96789 -20.51840 -18.57898 -17.97752 -17.48739 -17.17405 -16.79279 -16.30905 -16.24967 -15.84261 -15.46618 -15.12732 -14.88362 -14.70567 -14.53585 -14.22844 -14.14862 -13.91378 -13.77597 -13.45005 -13.10399 -13.02529 -12.63270 -12.52108 -12.43620 -12.39786 -12.17262 -12.02657 -11.74663 -11.54094 -11.42226 -11.36010 -11.07621 -10.83952 -10.79604 -10.63654 -10.37726 -10.34382 -9.80065 -8.31777 -6.37443 1.30465 1.38329 1.46833 1.64133 2.02364 2.34592 3.00287 3.10413 3.25493 3.74160 3.81959 3.91048 3.94708 4.06265 4.22518 4.23623 4.26272 4.29784 4.35205 4.41022 4.43928 4.56441 4.61077 4.62628 4.64992 4.78845 4.83855 4.87549 4.92071 4.98021 5.06857 5.07163 5.10207 5.20765 5.22653 5.30283 5.36186 5.42591 5.47685 5.48711 5.58293 5.63601 5.72378 6.24477 6.29231 6.69541 6.78268 7.34131 7.34354 8.81516 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.003883 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.307516 B = 7209.856130 C = 7798.446954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.104 0.896 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.141 4.141 8 C 0.083 3.917 9 H 0.078 0.922 10 O -0.372 6.372 11 C 0.050 3.950 12 C 0.503 3.497 13 O -0.583 6.583 14 N -0.696 5.696 15 C 0.161 3.839 16 C -0.040 4.040 17 C -0.477 4.477 18 H 0.055 0.945 19 C 0.042 3.958 20 N -0.934 5.934 21 Si 0.916 3.084 22 H -0.270 1.270 23 H -0.305 1.305 24 H -0.245 1.245 25 C -0.154 4.154 26 C -0.196 4.196 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.414 0.586 41 H 0.060 0.940 42 H 0.038 0.962 43 H 0.264 0.736 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 14.042 10.556 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.122 0.878 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.179 4.179 8 C 0.025 3.975 9 H 0.096 0.904 10 O -0.290 6.290 11 C -0.030 4.030 12 C 0.289 3.711 13 O -0.464 6.464 14 N -0.348 5.348 15 C 0.037 3.963 16 C -0.042 4.042 17 C -0.514 4.514 18 H 0.073 0.927 19 C -0.157 4.157 20 N -0.573 5.573 21 Si 0.743 3.257 22 H -0.196 1.196 23 H -0.232 1.232 24 H -0.168 1.168 25 C -0.191 4.191 26 C -0.234 4.234 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.252 0.748 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.609 13.587 11.427 18.116 hybrid contribution 0.857 -0.944 -0.472 1.359 sum -2.752 12.643 10.955 16.954 Atomic orbital electron populations 1.21753 0.94885 1.01267 1.02229 1.21260 0.96061 0.99319 0.93323 0.87779 1.21505 0.95735 1.00074 0.97630 1.21496 0.95335 1.01079 0.97093 1.21420 0.99924 0.98964 0.95283 1.22053 0.95527 1.02181 0.98098 1.22449 0.93565 0.81984 0.99466 0.90358 1.88032 1.86751 1.29145 1.25105 1.22216 1.02256 0.91156 0.87347 1.20878 0.77645 0.88612 0.83928 1.90632 1.52361 1.75017 1.28413 1.45855 1.68627 1.11002 1.09356 1.20887 0.98142 0.81010 0.96294 1.19533 0.96920 0.94154 0.93544 1.20256 0.92841 1.21336 1.17015 0.92720 1.25491 0.96290 0.97924 0.96010 1.69975 1.03623 1.44205 1.39536 0.86254 0.76682 0.80997 0.81753 1.19572 1.23228 1.16839 1.22955 0.92729 1.02795 1.00603 1.23003 1.05220 0.92667 1.02493 0.94414 0.91647 0.91954 0.94204 0.91016 0.92332 0.90246 0.94521 0.91725 0.92583 0.88697 0.89576 0.87633 0.74788 0.92215 0.94327 0.92636 0.87955 0.89482 0.90372 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.05 71.98 0.65 -2.09 16 2 C -0.08 -1.51 2.55 -10.79 -0.03 -1.54 16 3 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -2.34 5.06 30.59 0.15 -2.19 16 5 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 6 C -0.12 -2.71 5.78 30.60 0.18 -2.53 16 7 C -0.14 -2.87 5.63 30.59 0.17 -2.70 16 8 C 0.08 1.78 2.35 30.59 0.07 1.85 16 9 H 0.08 1.39 7.79 -2.38 -0.02 1.37 16 10 O -0.37 -11.18 7.51 -129.99 -0.98 -12.16 16 11 C 0.05 1.46 6.23 71.24 0.44 1.90 16 12 C 0.50 19.29 7.90 87.66 0.69 19.98 16 13 O -0.58 -26.98 16.51 15.96 0.26 -26.72 16 14 N -0.70 -26.93 5.28 -463.07 -2.44 -29.37 16 15 C 0.16 6.62 5.57 86.38 0.48 7.10 16 16 C -0.04 -1.70 1.22 -52.93 -0.06 -1.76 16 17 C -0.48 -23.97 7.82 25.60 0.20 -23.77 16 18 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 19 C 0.04 2.28 5.47 84.65 0.46 2.74 16 20 N -0.93 -54.13 13.96 21.44 0.30 -53.83 16 21 Si 0.92 43.54 25.26 68.60 1.73 45.28 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 24 H -0.24 -11.17 5.19 99.48 0.52 -10.65 16 25 C -0.15 -5.46 9.88 30.59 0.30 -5.16 16 26 C -0.20 -7.54 7.58 30.59 0.23 -7.31 16 27 H 0.04 0.94 7.68 -2.39 -0.02 0.92 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 1.12 7.68 -2.39 -0.02 1.10 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.04 1.09 7.68 -2.39 -0.02 1.08 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 2.36 7.87 -2.39 -0.02 2.35 16 39 H 0.11 2.39 8.09 -2.39 -0.02 2.37 16 40 H 0.41 15.45 7.32 -92.71 -0.68 14.77 16 41 H 0.06 2.28 7.89 -2.39 -0.02 2.27 16 42 H 0.04 1.76 6.38 -2.39 -0.02 1.74 16 43 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.10 3.08 8.04 -2.39 -0.02 3.06 16 45 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.08 3.18 7.30 -2.39 -0.02 3.17 16 47 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -65.61 365.29 3.07 -62.54 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.06 Total: 31.70 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.13 Total: -17.44 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.14 Total: -83.20 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.71 Total: -38.88 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.73 Total: 45.28 kcal Total: -65.61 3.07 -62.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431168111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.969 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds