Wall clock time and date at job start Tue Mar 31 2020 07:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20755 * 120.00096 * 2 1 4 4 C 1.50697 * 119.99776 * 179.97438 * 2 1 3 5 5 C 1.53004 * 109.46989 * 174.95053 * 4 2 1 6 6 C 1.50704 * 112.85007 * 300.60329 * 5 4 2 7 7 O 1.21280 * 119.99719 * 124.19100 * 6 5 4 8 8 N 1.34768 * 119.99952 * 304.19478 * 6 5 4 9 9 C 1.46500 * 120.00178 * 174.79601 * 8 6 5 10 10 C 1.52998 * 109.47510 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46735 * 299.99751 * 10 9 8 12 12 C 1.52996 * 109.47269 * 59.99990 * 10 9 8 13 13 C 1.53003 * 109.47158 * 180.02562 * 10 9 8 14 14 C 1.50695 * 109.46975 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00244 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99809 * 180.02562 * 14 13 10 17 17 N 1.31505 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99808 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46845 * 59.99902 * 18 16 14 20 20 H 1.48502 * 109.46924 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47374 * 299.99858 * 18 16 14 22 22 C 1.53781 * 113.61392 * 169.40942 * 5 4 2 23 23 C 1.53957 * 87.02064 * 220.04484 * 22 5 4 24 24 C 1.53777 * 113.61601 * 71.80224 * 5 4 2 25 25 H 1.08997 * 109.47104 * 240.00115 * 1 2 3 26 26 H 1.09000 * 109.46557 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46570 * 120.00312 * 1 2 3 28 28 H 1.09004 * 109.47798 * 294.94668 * 4 2 1 29 29 H 1.08999 * 109.47100 * 54.95345 * 4 2 1 30 30 H 0.97003 * 120.00574 * 354.79434 * 8 6 5 31 31 H 1.09007 * 109.47281 * 300.00440 * 9 8 6 32 32 H 1.09000 * 109.47034 * 59.99863 * 9 8 6 33 33 H 1.09001 * 109.47544 * 60.00185 * 11 10 9 34 34 H 1.09005 * 109.46877 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47838 * 300.00090 * 11 10 9 36 36 H 1.08997 * 109.46772 * 60.00092 * 12 10 9 37 37 H 1.08996 * 109.47008 * 180.02562 * 12 10 9 38 38 H 1.08996 * 109.47019 * 300.00093 * 12 10 9 39 39 H 1.08997 * 109.47327 * 300.00179 * 13 10 9 40 40 H 1.09002 * 109.46895 * 60.00228 * 13 10 9 41 41 H 0.97007 * 120.00299 * 180.02562 * 17 16 14 42 42 H 1.09002 * 113.61619 * 334.56457 * 22 5 4 43 43 H 1.08999 * 113.61665 * 105.46981 * 22 5 4 44 44 H 1.08992 * 113.53983 * 270.81354 * 23 22 5 45 45 H 1.09007 * 113.66706 * 139.92708 * 23 22 5 46 46 H 1.09008 * 113.61758 * 254.53249 * 24 5 4 47 47 H 1.09003 * 113.61438 * 25.43345 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7599 -1.0284 -0.1265 6 6 4.1123 -0.2811 -1.3868 7 8 4.7199 0.7665 -1.3208 8 7 3.7523 -0.7768 -2.5872 9 6 3.9931 0.0029 -3.8039 10 6 3.4944 -0.7812 -5.0193 11 6 4.2437 -2.1121 -5.1099 12 6 1.9951 -1.0489 -4.8735 13 6 3.7465 0.0329 -6.2900 14 6 3.2559 -0.7398 -7.4872 15 1 2.8087 -1.7139 -7.3550 16 6 3.3781 -0.2031 -8.7513 17 7 3.9222 0.9832 -8.9123 18 14 2.7693 -1.1607 -10.2353 19 1 1.3138 -1.4193 -10.0944 20 1 3.0152 -0.3711 -11.4687 21 1 3.4956 -2.4530 -10.3225 22 6 4.6380 -2.2663 0.1215 23 6 5.5980 -1.3335 0.8821 24 6 4.3848 -0.4252 1.1425 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3632 1.0277 -0.0005 27 1 -0.3632 -0.5139 -0.8900 28 1 2.0668 -1.8362 0.9326 29 1 1.9311 -1.9152 -0.8405 30 1 3.3337 -1.6499 -2.6457 31 1 3.4590 0.9510 -3.7395 32 1 5.0612 0.1940 -3.9075 33 1 4.0646 -2.6924 -4.2047 34 1 3.8881 -2.6710 -5.9756 35 1 5.3119 -1.9215 -5.2137 36 1 1.4614 -0.1007 -4.8090 37 1 1.6400 -1.6079 -5.7392 38 1 1.8160 -1.6291 -3.9684 39 1 3.2131 0.9813 -6.2257 40 1 4.8148 0.2231 -6.3936 41 1 4.0079 1.3610 -9.8017 42 1 4.1654 -3.0170 0.7550 43 1 5.0661 -2.6873 -0.7881 44 1 6.3565 -0.8772 0.2461 45 1 6.0137 -1.7769 1.7870 46 1 4.6088 0.6381 1.0560 47 1 3.8428 -0.6716 2.0556 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489861190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:37 Heat of formation + Delta-G solvation = -78.218347 kcal Electronic energy + Delta-G solvation = -25161.074054 eV Core-core repulsion = 21729.903334 eV Total energy + Delta-G solvation = -3431.170720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02286 -38.96663 -37.88068 -36.58162 -33.59055 -32.15636 -31.62003 -29.43103 -27.16996 -26.52740 -26.47369 -25.69174 -24.28404 -22.84399 -21.27272 -19.80006 -19.25033 -17.90029 -16.71819 -16.34517 -16.02869 -15.83925 -15.40434 -15.21637 -14.71823 -14.55641 -14.50147 -13.99424 -13.33194 -13.24243 -13.16929 -12.77136 -12.66778 -12.60145 -12.48977 -12.17486 -12.06999 -12.05272 -11.73227 -11.15715 -11.02628 -11.00402 -10.87318 -10.68514 -10.63546 -10.43606 -10.37248 -10.26455 -9.87462 -9.62395 -9.57519 -9.12561 -8.92508 -8.63461 -8.35592 -5.99433 -4.01071 1.89170 2.89938 3.31574 3.37187 3.37602 3.44123 3.80092 4.33546 4.44811 4.48451 4.52940 4.68711 4.84003 4.99591 5.03800 5.16215 5.28034 5.32708 5.35801 5.45638 5.49172 5.55794 5.60658 5.63823 5.73910 5.76207 5.82384 6.02281 6.10913 6.15567 6.22279 6.27560 6.35148 6.40120 6.59925 6.61521 6.80474 7.05608 7.06804 7.13503 7.44081 7.64504 7.77108 7.83975 7.99066 8.40494 8.56777 9.03529 9.61927 11.11977 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.003652 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.898069 B = 7664.491430 C = 8094.030908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.341 3.659 3 O -0.432 6.432 4 C -0.155 4.155 5 C -0.099 4.099 6 C 0.536 3.464 7 O -0.527 6.527 8 N -0.724 5.724 9 C 0.130 3.870 10 C -0.072 4.072 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.036 3.964 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.124 4.124 23 C -0.141 4.141 24 C -0.112 4.112 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.395 0.605 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.027 0.973 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -9.367 20.670 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.214 3.786 3 O -0.303 6.303 4 C -0.193 4.193 5 C -0.103 4.103 6 C 0.320 3.680 7 O -0.402 6.402 8 N -0.376 5.376 9 C 0.007 3.993 10 C -0.072 4.072 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.001 4.001 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.162 4.162 23 C -0.179 4.179 24 C -0.149 4.149 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.230 0.770 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.974 -7.871 20.558 22.369 hybrid contribution -0.706 -1.002 -1.048 1.613 sum -4.680 -8.873 19.510 21.938 Atomic orbital electron populations 1.22316 0.94453 1.05040 1.04322 1.24568 0.91976 0.90389 0.71644 1.90530 1.71615 1.34623 1.33558 1.22149 0.93896 0.98222 1.05009 1.21861 0.94235 0.98408 0.95751 1.19655 0.79072 0.85319 0.83933 1.90672 1.39664 1.23102 1.86811 1.46121 1.63005 1.22033 1.06466 1.21593 1.00819 0.94360 0.82534 1.20894 0.94770 0.96137 0.95431 1.21754 1.00012 0.96582 0.99989 1.21749 0.95906 1.00808 0.99837 1.19081 0.97236 0.94576 0.89214 1.21137 1.39514 1.03327 0.91058 0.92336 1.25012 0.95490 0.94948 0.98993 1.69953 1.44421 1.16285 1.22679 0.86715 0.79248 0.79962 0.82393 1.20337 1.21388 1.20331 1.23009 0.96879 0.95125 1.01188 1.22874 0.97088 0.97442 1.00473 1.22773 0.95934 1.01602 0.94637 0.89262 0.90035 0.88941 0.87526 0.88218 0.77040 0.92077 0.91913 0.95318 0.91456 0.93368 0.93430 0.91417 0.95433 0.96395 0.96362 0.92969 0.89111 0.90853 0.89808 0.91224 0.89491 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 10.26 36.01 0.37 -1.14 16 2 C 0.34 3.68 6.90 -29.03 -0.20 3.48 16 3 O -0.43 -6.82 15.12 5.87 0.09 -6.73 16 4 C -0.16 -1.28 4.96 -27.88 -0.14 -1.42 16 5 C -0.10 -1.11 0.59 -154.85 -0.09 -1.20 16 6 C 0.54 8.45 5.09 -10.99 -0.06 8.40 16 7 O -0.53 -10.74 15.76 5.42 0.09 -10.66 16 8 N -0.72 -10.85 4.87 -60.29 -0.29 -11.14 16 9 C 0.13 2.39 4.57 -4.04 -0.02 2.37 16 10 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 11 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 12 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 13 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 14 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 15 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.12 -1.10 7.24 -25.83 -0.19 -1.29 16 23 C -0.14 -1.44 7.81 -25.82 -0.20 -1.64 16 24 C -0.11 -1.27 6.25 -25.92 -0.16 -1.43 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.69 8.12 -51.93 -0.42 0.26 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.66 7.78 -51.93 -0.40 0.26 16 30 H 0.39 4.88 5.77 -40.82 -0.24 4.65 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 34 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 38 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.28 7.37 -51.92 -0.38 0.90 16 47 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -33.74 371.17 -7.64 -41.38 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.19 Total: 1.93 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.64 Total: -10.69 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.44 Total: -36.95 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.17 Total: -17.39 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.74 -7.64 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489861190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.837 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds