Wall clock time and date at job start Tue Mar 31 2020 07:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20755 * 120.00096 * 2 1 4 4 C 1.50697 * 119.99776 * 179.97438 * 2 1 3 5 5 C 1.53004 * 109.46989 * 174.95053 * 4 2 1 6 6 C 1.50704 * 112.85007 * 300.60329 * 5 4 2 7 7 O 1.21280 * 119.99719 * 124.19100 * 6 5 4 8 8 N 1.34768 * 119.99952 * 304.19478 * 6 5 4 9 9 C 1.46500 * 120.00178 * 174.79601 * 8 6 5 10 10 C 1.52998 * 109.47510 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46735 * 299.99751 * 10 9 8 12 12 C 1.52996 * 109.47269 * 59.99990 * 10 9 8 13 13 C 1.53003 * 109.47158 * 180.02562 * 10 9 8 14 14 C 1.50695 * 109.46975 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00244 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99809 * 180.02562 * 14 13 10 17 17 N 1.31505 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99808 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46845 * 59.99902 * 18 16 14 20 20 H 1.48502 * 109.46924 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47374 * 299.99858 * 18 16 14 22 22 C 1.53781 * 113.61392 * 169.40942 * 5 4 2 23 23 C 1.53957 * 87.02064 * 220.04484 * 22 5 4 24 24 C 1.53777 * 113.61601 * 71.80224 * 5 4 2 25 25 H 1.08997 * 109.47104 * 240.00115 * 1 2 3 26 26 H 1.09000 * 109.46557 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46570 * 120.00312 * 1 2 3 28 28 H 1.09004 * 109.47798 * 294.94668 * 4 2 1 29 29 H 1.08999 * 109.47100 * 54.95345 * 4 2 1 30 30 H 0.97003 * 120.00574 * 354.79434 * 8 6 5 31 31 H 1.09007 * 109.47281 * 300.00440 * 9 8 6 32 32 H 1.09000 * 109.47034 * 59.99863 * 9 8 6 33 33 H 1.09001 * 109.47544 * 60.00185 * 11 10 9 34 34 H 1.09005 * 109.46877 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47838 * 300.00090 * 11 10 9 36 36 H 1.08997 * 109.46772 * 60.00092 * 12 10 9 37 37 H 1.08996 * 109.47008 * 180.02562 * 12 10 9 38 38 H 1.08996 * 109.47019 * 300.00093 * 12 10 9 39 39 H 1.08997 * 109.47327 * 300.00179 * 13 10 9 40 40 H 1.09002 * 109.46895 * 60.00228 * 13 10 9 41 41 H 0.97007 * 120.00299 * 180.02562 * 17 16 14 42 42 H 1.09002 * 113.61619 * 334.56457 * 22 5 4 43 43 H 1.08999 * 113.61665 * 105.46981 * 22 5 4 44 44 H 1.08992 * 113.53983 * 270.81354 * 23 22 5 45 45 H 1.09007 * 113.66706 * 139.92708 * 23 22 5 46 46 H 1.09008 * 113.61758 * 254.53249 * 24 5 4 47 47 H 1.09003 * 113.61438 * 25.43345 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7599 -1.0284 -0.1265 6 6 4.1123 -0.2811 -1.3868 7 8 4.7199 0.7665 -1.3208 8 7 3.7523 -0.7768 -2.5872 9 6 3.9931 0.0029 -3.8039 10 6 3.4944 -0.7812 -5.0193 11 6 4.2437 -2.1121 -5.1099 12 6 1.9951 -1.0489 -4.8735 13 6 3.7465 0.0329 -6.2900 14 6 3.2559 -0.7398 -7.4872 15 1 2.8087 -1.7139 -7.3550 16 6 3.3781 -0.2031 -8.7513 17 7 3.9222 0.9832 -8.9123 18 14 2.7693 -1.1607 -10.2353 19 1 1.3138 -1.4193 -10.0944 20 1 3.0152 -0.3711 -11.4687 21 1 3.4956 -2.4530 -10.3225 22 6 4.6380 -2.2663 0.1215 23 6 5.5980 -1.3335 0.8821 24 6 4.3848 -0.4252 1.1425 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3632 1.0277 -0.0005 27 1 -0.3632 -0.5139 -0.8900 28 1 2.0668 -1.8362 0.9326 29 1 1.9311 -1.9152 -0.8405 30 1 3.3337 -1.6499 -2.6457 31 1 3.4590 0.9510 -3.7395 32 1 5.0612 0.1940 -3.9075 33 1 4.0646 -2.6924 -4.2047 34 1 3.8881 -2.6710 -5.9756 35 1 5.3119 -1.9215 -5.2137 36 1 1.4614 -0.1007 -4.8090 37 1 1.6400 -1.6079 -5.7392 38 1 1.8160 -1.6291 -3.9684 39 1 3.2131 0.9813 -6.2257 40 1 4.8148 0.2231 -6.3936 41 1 4.0079 1.3610 -9.8017 42 1 4.1654 -3.0170 0.7550 43 1 5.0661 -2.6873 -0.7881 44 1 6.3565 -0.8772 0.2461 45 1 6.0137 -1.7769 1.7870 46 1 4.6088 0.6381 1.0560 47 1 3.8428 -0.6716 2.0556 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489861190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:36 Heat of formation + Delta-G solvation = -100.453438 kcal Electronic energy + Delta-G solvation = -25162.038240 eV Core-core repulsion = 21729.903334 eV Total energy + Delta-G solvation = -3432.134906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02596 -40.03838 -39.13857 -37.93743 -35.27056 -33.96418 -32.44215 -30.16718 -29.10502 -27.97070 -27.85066 -26.50907 -25.52538 -24.45178 -22.45779 -20.61403 -20.47737 -19.37832 -18.38219 -17.69737 -17.04439 -16.89767 -16.52595 -16.34687 -16.11640 -15.91818 -15.68675 -15.15138 -14.80665 -14.70316 -14.40562 -14.00298 -13.94545 -13.74173 -13.48946 -13.26494 -13.13375 -12.88006 -12.83331 -12.74875 -12.60335 -12.49102 -12.33925 -12.23284 -12.01956 -11.85733 -11.55258 -11.47694 -11.21496 -11.12675 -10.91030 -10.61749 -10.51585 -10.41238 -10.05817 -8.14063 -6.22955 1.13660 1.42724 1.45420 1.52619 1.69888 2.20547 2.45213 3.09655 3.20227 3.51519 3.66661 3.76072 3.87198 3.93967 4.02867 4.06028 4.20382 4.33127 4.43590 4.58222 4.67322 4.68321 4.73788 4.75490 4.78011 4.81791 4.88085 4.90935 4.95299 5.05196 5.09480 5.11478 5.19270 5.22015 5.29229 5.39085 5.46966 5.48455 5.51197 5.52561 5.56643 5.78717 5.88497 6.28573 6.64127 6.71342 6.92255 7.35417 7.45283 8.98562 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.003652 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.898069 B = 7664.491430 C = 8094.030908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.334 3.666 3 O -0.499 6.499 4 C -0.153 4.153 5 C -0.102 4.102 6 C 0.529 3.471 7 O -0.585 6.585 8 N -0.709 5.709 9 C 0.144 3.856 10 C -0.063 4.063 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.941 5.941 18 Si 0.961 3.039 19 H -0.264 1.264 20 H -0.293 1.293 21 H -0.265 1.265 22 C -0.103 4.103 23 C -0.147 4.147 24 C -0.115 4.115 25 H 0.125 0.875 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.155 0.845 29 H 0.129 0.871 30 H 0.413 0.587 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.075 0.925 39 H -0.020 1.020 40 H -0.019 1.019 41 H 0.259 0.741 42 H 0.137 0.863 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.095 0.905 46 H 0.037 0.963 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 -14.327 22.418 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.212 3.788 3 O -0.375 6.375 4 C -0.189 4.189 5 C -0.105 4.105 6 C 0.317 3.683 7 O -0.464 6.464 8 N -0.362 5.362 9 C 0.020 3.980 10 C -0.063 4.063 11 C -0.177 4.177 12 C -0.177 4.177 13 C 0.002 3.998 14 C -0.551 4.551 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.582 5.582 18 Si 0.786 3.214 19 H -0.189 1.189 20 H -0.219 1.219 21 H -0.189 1.189 22 C -0.141 4.141 23 C -0.184 4.184 24 C -0.153 4.153 25 H 0.143 0.857 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.173 0.827 29 H 0.146 0.854 30 H 0.251 0.749 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.093 0.907 39 H -0.001 1.001 40 H 0.000 1.000 41 H 0.068 0.932 42 H 0.155 0.845 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.113 0.887 46 H 0.056 0.944 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.358 -12.905 22.322 26.557 hybrid contribution 0.060 0.634 -1.529 1.656 sum -6.298 -12.271 20.793 24.952 Atomic orbital electron populations 1.22357 0.92009 1.04665 1.06780 1.25425 0.93677 0.90554 0.69104 1.90549 1.73018 1.37002 1.36943 1.22338 0.90643 0.97306 1.08652 1.21856 0.97156 0.99090 0.92412 1.20659 0.77501 0.84810 0.85340 1.90651 1.42172 1.25949 1.87660 1.45866 1.62939 1.22291 1.05149 1.21127 0.98770 0.93854 0.84258 1.20698 0.96985 0.96173 0.92477 1.21686 0.98680 0.95452 1.01907 1.21683 0.93455 1.00727 1.01839 1.18972 0.94235 0.94039 0.92554 1.21555 1.38432 1.03798 0.91358 0.90520 1.26004 0.95822 0.95871 1.02647 1.70134 1.46396 1.18456 1.23246 0.85553 0.79296 0.78582 0.77934 1.18885 1.21883 1.18937 1.23067 0.95137 0.94365 1.01499 1.22863 0.96437 0.97785 1.01325 1.22835 0.97249 0.98938 0.96255 0.85710 0.92003 0.87169 0.82738 0.85353 0.74884 0.94938 0.94446 0.90797 0.92170 0.94816 0.94905 0.92124 0.90660 1.00123 1.00042 0.93203 0.84482 0.91028 0.93371 0.88654 0.94362 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.37 10.26 71.24 0.73 -1.64 16 2 C 0.33 6.48 6.90 29.10 0.20 6.68 16 3 O -0.50 -16.20 15.12 -1.30 -0.02 -16.22 16 4 C -0.15 -1.77 4.96 29.85 0.15 -1.62 16 5 C -0.10 -2.03 0.59 -52.40 -0.03 -2.06 16 6 C 0.53 16.80 5.09 87.66 0.45 17.24 16 7 O -0.59 -25.66 15.76 -2.90 -0.05 -25.71 16 8 N -0.71 -20.55 4.87 -463.06 -2.25 -22.81 16 9 C 0.14 5.57 4.57 86.38 0.39 5.96 16 10 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 11 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 12 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 13 C 0.04 2.07 4.04 29.85 0.12 2.19 16 14 C -0.51 -27.59 7.65 25.60 0.20 -27.40 16 15 H 0.08 3.78 5.68 -2.91 -0.02 3.76 16 16 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 17 N -0.94 -58.17 13.29 21.45 0.28 -57.88 16 18 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 C -0.10 -1.36 7.24 31.18 0.23 -1.14 16 23 C -0.15 -2.74 7.81 31.18 0.24 -2.50 16 24 C -0.12 -2.48 6.25 31.12 0.19 -2.29 16 25 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 27 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.16 0.43 8.14 -2.39 -0.02 0.42 16 29 H 0.13 0.83 7.78 -2.39 -0.02 0.81 16 30 H 0.41 8.62 5.77 -92.71 -0.54 8.08 16 31 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 34 H 0.06 2.10 6.62 -2.38 -0.02 2.08 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 38 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 39 H -0.02 -1.16 8.14 -2.39 -0.02 -1.17 16 40 H -0.02 -1.11 8.14 -2.39 -0.02 -1.12 16 41 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 42 H 0.14 0.66 8.10 -2.39 -0.02 0.64 16 43 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 44 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.04 1.20 7.37 -2.38 -0.02 1.18 16 47 H 0.11 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -83.99 371.17 4.86 -79.13 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.41 Total: 13.69 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 4.46 Total: -15.66 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -1.97 Total: -80.69 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.07 Total: -41.93 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -83.99 4.86 -79.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489861190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.321 kcal (2) G-P(sol) polarization free energy of solvation -83.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds