Wall clock time and date at job start Tue Mar 31 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 N 1.46499 * 109.47102 * 119.99899 * 2 1 3 5 5 C 1.46495 * 120.00116 * 120.95279 * 4 2 1 6 6 C 1.50700 * 109.47208 * 89.99807 * 5 4 2 7 7 H 1.08001 * 119.99774 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00379 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00288 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99896 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47229 * 89.99613 * 10 8 6 12 12 H 1.48500 * 109.47103 * 209.99764 * 10 8 6 13 13 H 1.48504 * 109.46607 * 329.99516 * 10 8 6 14 14 C 1.34773 * 119.99950 * 300.95747 * 4 2 1 15 15 O 1.21616 * 120.00166 * 169.35574 * 14 4 2 16 16 C 1.47103 * 120.00288 * 349.34934 * 14 4 2 17 17 C 1.32992 * 120.00304 * 200.15272 * 16 14 4 18 18 C 1.50701 * 119.99961 * 29.73294 * 17 16 14 19 19 C 1.53002 * 109.54596 * 146.38845 * 18 17 16 20 20 C 1.53175 * 109.54458 * 26.11768 * 18 17 16 21 21 C 1.53096 * 109.16381 * 183.15615 * 20 18 17 22 22 O 1.42898 * 109.41719 * 57.60716 * 21 20 18 23 23 C 1.42900 * 114.10065 * 298.84625 * 22 21 20 24 24 C 1.53093 * 109.41745 * 61.15267 * 23 22 21 25 25 H 1.09008 * 109.46807 * 301.11315 * 1 2 3 26 26 H 1.09000 * 109.47434 * 61.11102 * 1 2 3 27 27 H 1.08993 * 109.47468 * 181.11468 * 1 2 3 28 28 H 1.08993 * 109.46859 * 239.99793 * 2 1 3 29 29 H 1.09007 * 109.46409 * 193.70246 * 3 2 1 30 30 H 1.08994 * 109.47170 * 313.69985 * 3 2 1 31 31 H 1.08999 * 109.46985 * 73.70770 * 3 2 1 32 32 H 1.09001 * 109.47441 * 209.99855 * 5 4 2 33 33 H 1.09003 * 109.47409 * 330.00274 * 5 4 2 34 34 H 0.96997 * 119.99694 * 180.02562 * 9 8 6 35 35 H 1.07995 * 119.99704 * 20.14907 * 16 14 4 36 36 H 1.07993 * 120.00326 * 209.73148 * 17 16 14 37 37 H 1.09000 * 109.46734 * 63.98848 * 19 18 17 38 38 H 1.08997 * 109.46911 * 183.99250 * 19 18 17 39 39 H 1.09000 * 109.46702 * 303.98861 * 19 18 17 40 40 H 1.09001 * 109.52544 * 303.06282 * 20 18 17 41 41 H 1.09001 * 109.52124 * 63.25270 * 20 18 17 42 42 H 1.09001 * 109.47602 * 297.62781 * 21 20 18 43 43 H 1.09003 * 109.48995 * 177.60225 * 21 20 18 44 44 H 1.09006 * 109.47981 * 301.17494 * 23 22 21 45 45 H 1.09002 * 109.49356 * 181.14498 * 23 22 21 46 46 H 1.08991 * 109.52465 * 182.48762 * 24 23 22 47 47 H 1.09004 * 109.57402 * 62.33126 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8777 -1.8694 1.0619 6 6 4.3212 -1.4377 1.0295 7 1 4.5732 -0.3900 1.1020 8 6 5.3201 -2.3801 0.9082 9 7 6.5799 -2.0034 0.8804 10 14 4.8843 -4.1924 0.7833 11 1 4.7045 -4.5611 -0.6438 12 1 5.9786 -5.0063 1.3709 13 1 3.6231 -4.4502 1.5239 14 6 1.6769 -0.2415 2.4201 15 8 1.9154 -0.9158 3.4037 16 6 1.0159 1.0645 2.5665 17 6 1.0355 1.6921 3.7388 18 6 2.1942 1.4919 4.6814 19 6 2.4552 2.7865 5.4540 20 6 3.4440 1.1086 3.8830 21 6 4.5948 0.8305 4.8537 22 8 4.2117 -0.2053 5.7604 23 6 3.0770 0.1159 6.5675 24 6 1.8652 0.3652 5.6658 25 1 -0.3633 0.5311 0.8799 26 1 -0.3634 0.4965 -0.8998 27 1 -0.3634 -1.0274 0.0200 28 1 1.8933 -0.5138 -0.8899 29 1 3.1025 1.4522 -0.2435 30 1 1.4917 2.0217 -0.7429 31 1 1.8892 1.8812 0.9864 32 1 2.7166 -2.5350 1.9099 33 1 2.6343 -2.3931 0.1375 34 1 7.2826 -2.6665 0.7947 35 1 0.5147 1.5137 1.7219 36 1 0.2212 2.3453 4.0154 37 1 1.5924 3.0168 6.0789 38 1 3.3368 2.6627 6.0830 39 1 2.6225 3.6020 4.7504 40 1 3.2400 0.2143 3.2941 41 1 3.7176 1.9285 3.2190 42 1 4.8250 1.7370 5.4136 43 1 5.4752 0.5159 4.2933 44 1 3.2874 1.0130 7.1499 45 1 2.8638 -0.7136 7.2418 46 1 1.0098 0.6535 6.2766 47 1 1.6282 -0.5438 5.1129 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493230555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:48 Heat of formation + Delta-G solvation = -21.485434 kcal Electronic energy + Delta-G solvation = -26727.616967 eV Core-core repulsion = 23298.906371 eV Total energy + Delta-G solvation = -3428.710596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57166 -38.70166 -36.16072 -35.19744 -33.07028 -31.58148 -30.88678 -30.46243 -27.69706 -27.56064 -26.93402 -24.62740 -23.11450 -22.85469 -21.78610 -20.48925 -18.73277 -17.76546 -16.87814 -16.11910 -16.06074 -15.56156 -15.02204 -14.83309 -14.45704 -14.30388 -14.07874 -13.68636 -13.41971 -13.33349 -13.08049 -12.69145 -12.61416 -12.43473 -11.99343 -11.93514 -11.82173 -11.68390 -11.51123 -11.31599 -11.03913 -10.86160 -10.65018 -10.43457 -10.33113 -10.22842 -10.11239 -9.98699 -9.55593 -9.34569 -9.01427 -8.81114 -8.54954 -8.39628 -7.60021 -6.05269 -4.03451 1.60758 3.30098 3.39085 3.44068 3.79951 3.90323 4.43918 4.48144 4.91835 4.94919 5.10086 5.19901 5.23583 5.30402 5.40977 5.49991 5.53848 5.62956 5.63576 5.66151 5.68688 5.79887 5.82120 5.93614 5.98573 6.02904 6.08364 6.10230 6.15112 6.18961 6.27968 6.40068 6.45080 6.51851 6.60044 6.62413 6.72206 6.81808 6.95054 7.07404 7.14038 7.53579 7.65066 7.82362 8.31272 8.51372 8.96835 9.07640 9.56101 11.07734 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.007540 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.039843 B = 3712.406885 C = 4992.061187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.138 3.862 3 C -0.179 4.179 4 N -0.588 5.588 5 C 0.213 3.787 6 C -0.525 4.525 7 H 0.076 0.924 8 C 0.075 3.925 9 N -0.896 5.896 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.263 1.263 14 C 0.552 3.448 15 O -0.524 6.524 16 C -0.228 4.228 17 C -0.072 4.072 18 C -0.032 4.032 19 C -0.142 4.142 20 C -0.179 4.179 21 C 0.072 3.928 22 O -0.373 6.373 23 C 0.066 3.934 24 C -0.160 4.160 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.022 0.978 34 H 0.264 0.736 35 H 0.143 0.857 36 H 0.119 0.881 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.133 0.867 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.094 0.906 44 H 0.036 0.964 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 9.471 3.707 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.033 3.967 3 C -0.237 4.237 4 N -0.318 5.318 5 C 0.092 3.908 6 C -0.564 4.564 7 H 0.094 0.906 8 C -0.127 4.127 9 N -0.534 5.534 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.188 1.188 14 C 0.343 3.657 15 O -0.406 6.406 16 C -0.249 4.249 17 C -0.092 4.092 18 C -0.032 4.032 19 C -0.199 4.199 20 C -0.216 4.216 21 C -0.005 4.005 22 O -0.291 6.291 23 C -0.011 4.011 24 C -0.197 4.197 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.873 8.842 4.182 15.383 hybrid contribution -0.164 -0.400 -0.322 0.539 sum -12.037 8.441 3.860 15.200 Atomic orbital electron populations 1.22548 0.96091 1.02544 1.02313 1.20946 0.92748 0.93545 0.89469 1.22627 1.02667 0.95901 1.02497 1.48003 1.48673 1.30743 1.04415 1.19723 0.90102 0.83807 0.97124 1.21289 0.88365 0.95921 1.50819 0.90600 1.24808 0.94819 0.98584 0.94503 1.69883 0.99138 1.34156 1.50253 0.86917 0.78938 0.85933 0.78396 1.20330 1.21030 1.18785 1.18236 0.77630 0.86633 0.83195 1.90567 1.54494 1.58938 1.36580 1.23326 1.06676 0.96544 0.98309 1.23538 0.95251 0.96987 0.93401 1.19661 0.93606 0.94981 0.94982 1.21960 1.01497 0.96654 0.99788 1.23097 0.93756 1.05539 0.99209 1.22460 0.97609 0.89790 0.90592 1.87978 1.46700 1.41589 1.52826 1.22456 0.86660 0.99418 0.92599 1.22734 0.97199 1.01998 0.97781 0.91586 0.91826 0.92317 0.89149 0.91432 0.92398 0.90936 0.93779 0.96032 0.92654 0.83949 0.86364 0.92885 0.92176 0.92772 0.84999 0.92601 0.94801 0.88805 0.94618 0.89952 0.92906 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 8.95 37.16 0.33 -1.85 16 2 C 0.14 2.16 3.28 -67.93 -0.22 1.93 16 3 C -0.18 -2.55 8.92 37.16 0.33 -2.22 16 4 N -0.59 -11.71 2.41 -168.86 -0.41 -12.12 16 5 C 0.21 5.11 4.28 -5.20 -0.02 5.09 16 6 C -0.53 -14.58 9.94 -34.44 -0.34 -14.92 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 8 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 9 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 10 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 14 C 0.55 10.76 4.64 -12.67 -0.06 10.70 16 15 O -0.52 -11.84 10.25 5.26 0.05 -11.79 16 16 C -0.23 -3.45 5.82 -37.81 -0.22 -3.67 16 17 C -0.07 -1.00 8.56 -36.13 -0.31 -1.31 16 18 C -0.03 -0.49 0.50 -155.47 -0.08 -0.57 16 19 C -0.14 -1.77 7.91 37.16 0.29 -1.47 16 20 C -0.18 -3.37 4.02 -26.59 -0.11 -3.48 16 21 C 0.07 1.38 6.57 37.21 0.24 1.62 16 22 O -0.37 -7.62 10.77 -35.23 -0.38 -8.00 16 23 C 0.07 1.07 6.57 37.21 0.24 1.31 16 24 C -0.16 -2.59 4.67 -26.59 -0.12 -2.71 16 25 H 0.07 0.77 4.95 -51.92 -0.26 0.52 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.45 7.79 -51.93 -0.40 1.05 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.64 8.07 -51.93 -0.42 0.23 16 31 H 0.07 1.02 4.30 -51.93 -0.22 0.80 16 32 H 0.04 1.15 6.36 -51.93 -0.33 0.82 16 33 H 0.02 0.50 7.34 -51.93 -0.38 0.11 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.14 1.79 3.93 -52.49 -0.21 1.58 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.76 5.03 -51.93 -0.26 0.50 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.13 2.98 3.27 -52.43 -0.17 2.81 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.55 6.52 -51.93 -0.34 0.21 16 43 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 44 H 0.04 0.50 6.70 -51.93 -0.35 0.16 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.13 2.45 4.69 -51.86 -0.24 2.21 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -31.95 342.34 -7.01 -38.95 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.40 Total: 6.75 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.14 Total: -9.48 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.37 Total: -38.55 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.33 Total: -19.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.95 -7.01 -38.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493230555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.466 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds