Wall clock time and date at job start Tue Mar 31 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 N 1.46499 * 109.47102 * 119.99899 * 2 1 3 5 5 C 1.46495 * 120.00116 * 120.95279 * 4 2 1 6 6 C 1.50700 * 109.47208 * 89.99807 * 5 4 2 7 7 H 1.08001 * 119.99774 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00379 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00288 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99896 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47229 * 89.99613 * 10 8 6 12 12 H 1.48500 * 109.47103 * 209.99764 * 10 8 6 13 13 H 1.48504 * 109.46607 * 329.99516 * 10 8 6 14 14 C 1.34773 * 119.99950 * 300.95747 * 4 2 1 15 15 O 1.21616 * 120.00166 * 169.35574 * 14 4 2 16 16 C 1.47103 * 120.00288 * 349.34934 * 14 4 2 17 17 C 1.32992 * 120.00304 * 200.15272 * 16 14 4 18 18 C 1.50701 * 119.99961 * 29.73294 * 17 16 14 19 19 C 1.53002 * 109.54596 * 146.38845 * 18 17 16 20 20 C 1.53175 * 109.54458 * 26.11768 * 18 17 16 21 21 C 1.53096 * 109.16381 * 183.15615 * 20 18 17 22 22 O 1.42898 * 109.41719 * 57.60716 * 21 20 18 23 23 C 1.42900 * 114.10065 * 298.84625 * 22 21 20 24 24 C 1.53093 * 109.41745 * 61.15267 * 23 22 21 25 25 H 1.09008 * 109.46807 * 301.11315 * 1 2 3 26 26 H 1.09000 * 109.47434 * 61.11102 * 1 2 3 27 27 H 1.08993 * 109.47468 * 181.11468 * 1 2 3 28 28 H 1.08993 * 109.46859 * 239.99793 * 2 1 3 29 29 H 1.09007 * 109.46409 * 193.70246 * 3 2 1 30 30 H 1.08994 * 109.47170 * 313.69985 * 3 2 1 31 31 H 1.08999 * 109.46985 * 73.70770 * 3 2 1 32 32 H 1.09001 * 109.47441 * 209.99855 * 5 4 2 33 33 H 1.09003 * 109.47409 * 330.00274 * 5 4 2 34 34 H 0.96997 * 119.99694 * 180.02562 * 9 8 6 35 35 H 1.07995 * 119.99704 * 20.14907 * 16 14 4 36 36 H 1.07993 * 120.00326 * 209.73148 * 17 16 14 37 37 H 1.09000 * 109.46734 * 63.98848 * 19 18 17 38 38 H 1.08997 * 109.46911 * 183.99250 * 19 18 17 39 39 H 1.09000 * 109.46702 * 303.98861 * 19 18 17 40 40 H 1.09001 * 109.52544 * 303.06282 * 20 18 17 41 41 H 1.09001 * 109.52124 * 63.25270 * 20 18 17 42 42 H 1.09001 * 109.47602 * 297.62781 * 21 20 18 43 43 H 1.09003 * 109.48995 * 177.60225 * 21 20 18 44 44 H 1.09006 * 109.47981 * 301.17494 * 23 22 21 45 45 H 1.09002 * 109.49356 * 181.14498 * 23 22 21 46 46 H 1.08991 * 109.52465 * 182.48762 * 24 23 22 47 47 H 1.09004 * 109.57402 * 62.33126 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8777 -1.8694 1.0619 6 6 4.3212 -1.4377 1.0295 7 1 4.5732 -0.3900 1.1020 8 6 5.3201 -2.3801 0.9082 9 7 6.5799 -2.0034 0.8804 10 14 4.8843 -4.1924 0.7833 11 1 4.7045 -4.5611 -0.6438 12 1 5.9786 -5.0063 1.3709 13 1 3.6231 -4.4502 1.5239 14 6 1.6769 -0.2415 2.4201 15 8 1.9154 -0.9158 3.4037 16 6 1.0159 1.0645 2.5665 17 6 1.0355 1.6921 3.7388 18 6 2.1942 1.4919 4.6814 19 6 2.4552 2.7865 5.4540 20 6 3.4440 1.1086 3.8830 21 6 4.5948 0.8305 4.8537 22 8 4.2117 -0.2053 5.7604 23 6 3.0770 0.1159 6.5675 24 6 1.8652 0.3652 5.6658 25 1 -0.3633 0.5311 0.8799 26 1 -0.3634 0.4965 -0.8998 27 1 -0.3634 -1.0274 0.0200 28 1 1.8933 -0.5138 -0.8899 29 1 3.1025 1.4522 -0.2435 30 1 1.4917 2.0217 -0.7429 31 1 1.8892 1.8812 0.9864 32 1 2.7166 -2.5350 1.9099 33 1 2.6343 -2.3931 0.1375 34 1 7.2826 -2.6665 0.7947 35 1 0.5147 1.5137 1.7219 36 1 0.2212 2.3453 4.0154 37 1 1.5924 3.0168 6.0789 38 1 3.3368 2.6627 6.0830 39 1 2.6225 3.6020 4.7504 40 1 3.2400 0.2143 3.2941 41 1 3.7176 1.9285 3.2190 42 1 4.8250 1.7370 5.4136 43 1 5.4752 0.5159 4.2933 44 1 3.2874 1.0130 7.1499 45 1 2.8638 -0.7136 7.2418 46 1 1.0098 0.6535 6.2766 47 1 1.6282 -0.5438 5.1129 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493230555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:47 Heat of formation + Delta-G solvation = -42.612598 kcal Electronic energy + Delta-G solvation = -26728.533109 eV Core-core repulsion = 23298.906371 eV Total energy + Delta-G solvation = -3429.626739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95656 -40.11965 -37.59547 -36.55374 -35.08156 -33.21196 -32.22436 -31.84845 -29.55159 -28.75618 -27.99366 -26.01594 -24.58999 -24.39126 -23.35693 -21.83037 -20.11236 -19.18101 -18.91732 -17.60808 -17.47314 -17.04422 -16.58944 -16.22410 -15.99651 -15.77752 -15.66667 -14.96102 -14.82760 -14.68077 -14.48375 -14.24554 -13.89400 -13.81627 -13.62064 -13.25267 -13.17948 -13.01480 -12.80666 -12.66185 -12.53290 -12.33309 -12.13039 -11.99795 -11.94137 -11.74646 -11.52901 -11.48420 -11.27767 -10.86981 -10.79059 -10.48441 -10.16972 -9.68076 -9.18463 -8.30959 -6.33309 0.42553 1.28435 1.33995 1.43946 2.31303 2.35572 2.50286 3.03652 3.06627 3.73216 3.78199 3.89106 4.02906 4.05639 4.23389 4.26951 4.27892 4.32487 4.42866 4.46931 4.56551 4.69423 4.72204 4.73568 4.76624 4.82456 4.86880 4.90388 4.96218 4.98438 5.02415 5.03035 5.16834 5.22391 5.28132 5.30462 5.43194 5.45685 5.50617 5.53500 5.62538 5.71632 5.96680 6.31987 6.41066 6.67636 6.85143 7.27805 7.61533 8.85347 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.007540 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.039843 B = 3712.406885 C = 4992.061187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 C -0.172 4.172 4 N -0.599 5.599 5 C 0.224 3.776 6 C -0.520 4.520 7 H 0.035 0.965 8 C 0.015 3.985 9 N -0.942 5.942 10 Si 0.937 3.063 11 H -0.254 1.254 12 H -0.285 1.285 13 H -0.260 1.260 14 C 0.543 3.457 15 O -0.564 6.564 16 C -0.241 4.241 17 C -0.053 4.053 18 C -0.034 4.034 19 C -0.136 4.136 20 C -0.179 4.179 21 C 0.073 3.927 22 O -0.410 6.410 23 C 0.058 3.942 24 C -0.158 4.158 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.018 0.982 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 11.341 4.120 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 C -0.230 4.230 4 N -0.330 5.330 5 C 0.102 3.898 6 C -0.559 4.559 7 H 0.053 0.947 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.761 3.239 11 H -0.178 1.178 12 H -0.211 1.211 13 H -0.184 1.184 14 C 0.337 3.663 15 O -0.448 6.448 16 C -0.261 4.261 17 C -0.072 4.072 18 C -0.034 4.034 19 C -0.192 4.192 20 C -0.216 4.216 21 C -0.004 4.004 22 O -0.330 6.330 23 C -0.018 4.018 24 C -0.195 4.195 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.332 10.740 4.568 19.268 hybrid contribution 0.964 -0.931 -0.383 1.394 sum -14.368 9.809 4.185 17.893 Atomic orbital electron populations 1.22456 0.92660 1.02740 1.04467 1.21272 0.95375 0.93690 0.87312 1.22572 1.00883 0.95567 1.03935 1.48092 1.48364 1.30081 1.06455 1.19282 0.88673 0.85469 0.96398 1.21468 0.90793 0.94029 1.49578 0.94682 1.25706 0.94629 1.03563 0.94394 1.70035 1.00319 1.35759 1.52126 0.85861 0.78511 0.79914 0.79587 1.17841 1.21066 1.18422 1.19042 0.76956 0.88111 0.82233 1.90583 1.56147 1.60398 1.37681 1.23292 1.07425 0.95100 1.00280 1.23957 0.95019 0.96440 0.91799 1.19713 0.92384 0.96312 0.94996 1.21917 1.02604 0.94828 0.99893 1.22975 0.95805 1.03655 0.99215 1.22379 0.96571 0.90517 0.90909 1.87912 1.48638 1.42855 1.53571 1.22724 0.85522 1.01085 0.92456 1.22630 0.98129 1.00829 0.97915 0.90507 0.88455 0.93144 0.90274 0.95024 0.88358 0.90569 0.96356 0.94607 0.92576 0.80880 0.81466 0.89856 0.92733 0.91693 0.88825 0.92977 0.91582 0.92830 0.91696 0.89224 0.89564 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 8.95 71.98 0.64 -2.95 16 2 C 0.13 3.88 3.28 44.99 0.15 4.03 16 3 C -0.17 -4.70 8.92 71.98 0.64 -4.06 16 4 N -0.60 -24.50 2.41 -806.39 -1.94 -26.44 16 5 C 0.22 11.22 4.28 85.63 0.37 11.59 16 6 C -0.52 -30.68 9.94 25.60 0.25 -30.43 16 7 H 0.03 2.29 8.06 -2.91 -0.02 2.27 16 8 C 0.02 0.90 5.47 84.65 0.46 1.37 16 9 N -0.94 -60.29 13.96 21.45 0.30 -59.99 16 10 Si 0.94 46.16 27.47 68.60 1.88 48.04 16 11 H -0.25 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16 14 C 0.54 21.46 4.64 86.57 0.40 21.86 16 15 O -0.56 -26.56 10.25 -4.08 -0.04 -26.60 16 16 C -0.24 -6.73 5.82 23.43 0.14 -6.60 16 17 C -0.05 -1.27 8.56 24.52 0.21 -1.06 16 18 C -0.03 -0.97 0.50 -52.81 -0.03 -0.99 16 19 C -0.14 -2.81 7.91 71.98 0.57 -2.24 16 20 C -0.18 -6.93 4.02 30.68 0.12 -6.81 16 21 C 0.07 2.91 6.57 72.01 0.47 3.39 16 22 O -0.41 -17.43 10.77 -148.98 -1.60 -19.04 16 23 C 0.06 1.84 6.57 72.01 0.47 2.31 16 24 C -0.16 -4.83 4.67 30.69 0.14 -4.69 16 25 H 0.08 1.51 4.95 -2.38 -0.01 1.50 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.55 7.79 -2.39 -0.02 2.53 16 29 H 0.03 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 31 H 0.08 2.02 4.30 -2.39 -0.01 2.01 16 32 H 0.02 1.01 6.36 -2.39 -0.02 0.99 16 33 H 0.04 1.67 7.34 -2.39 -0.02 1.66 16 34 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.17 3.67 3.93 -2.91 -0.01 3.66 16 36 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.19 5.03 -2.39 -0.01 1.18 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 4.48 3.27 -15.85 -0.05 4.42 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.16 6.52 -2.39 -0.02 2.14 16 43 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.06 1.67 6.70 -2.38 -0.02 1.65 16 45 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.09 3.49 4.69 -6.80 -0.03 3.46 16 Total: -1.00 -77.60 342.34 4.46 -73.15 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.84 Total: 26.16 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.02 Total: -15.28 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -1.64 Total: -86.43 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -1.65 Total: -45.63 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.04 kcal Total: -77.60 4.46 -73.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493230555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.533 kcal (2) G-P(sol) polarization free energy of solvation -77.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds