Wall clock time and date at job start Tue Mar 31 2020 07:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47200 * 2 1 4 4 C 1.46496 * 120.00115 * 270.00509 * 3 2 1 5 5 C 1.53000 * 109.46986 * 269.99621 * 4 3 2 6 6 C 1.53004 * 109.47190 * 64.99929 * 5 4 3 7 7 C 1.50696 * 109.47441 * 185.00314 * 5 4 3 8 8 N 1.27951 * 119.99519 * 334.99821 * 7 5 4 9 9 Si 1.86799 * 120.00300 * 155.00133 * 7 5 4 10 10 H 1.48496 * 109.47184 * 60.00202 * 9 7 5 11 11 H 1.48502 * 109.46905 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47140 * 299.99660 * 9 7 5 13 13 C 1.34778 * 119.99449 * 90.00033 * 3 2 1 14 14 O 1.21618 * 119.99674 * 180.02562 * 13 3 2 15 15 C 1.47103 * 120.00345 * 0.02562 * 13 3 2 16 16 C 1.32986 * 120.00067 * 176.67358 * 15 13 3 17 17 C 1.50699 * 120.00069 * 314.47707 * 16 15 13 18 18 C 1.52997 * 109.54395 * 224.70589 * 17 16 15 19 19 C 1.53185 * 109.54620 * 104.52630 * 17 16 15 20 20 C 1.53102 * 109.15982 * 183.24332 * 19 17 16 21 21 O 1.42905 * 109.48549 * 57.47323 * 20 19 17 22 22 C 1.42896 * 114.09811 * 298.89000 * 21 20 19 23 23 C 1.53085 * 109.41890 * 61.15868 * 22 21 20 24 24 H 1.08997 * 109.47100 * 59.99554 * 1 2 3 25 25 H 1.08996 * 109.47097 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46838 * 299.99553 * 1 2 3 27 27 H 1.09002 * 109.46838 * 240.00447 * 2 1 3 28 28 H 1.08997 * 109.47100 * 120.00446 * 2 1 3 29 29 H 1.08999 * 109.47242 * 29.99663 * 4 3 2 30 30 H 1.09000 * 109.47044 * 150.00359 * 4 3 2 31 31 H 1.09005 * 109.47354 * 305.00377 * 5 4 3 32 32 H 1.08998 * 109.47317 * 300.00411 * 6 5 4 33 33 H 1.09005 * 109.46606 * 59.99990 * 6 5 4 34 34 H 1.09001 * 109.47232 * 179.97438 * 6 5 4 35 35 H 0.96999 * 119.99587 * 179.97438 * 8 7 5 36 36 H 1.08004 * 119.99669 * 356.66877 * 15 13 3 37 37 H 1.08002 * 120.00185 * 134.19920 * 16 15 13 38 38 H 1.08999 * 109.47281 * 53.12221 * 18 17 16 39 39 H 1.09007 * 109.47063 * 173.11865 * 18 17 16 40 40 H 1.08999 * 109.47347 * 293.11736 * 18 17 16 41 41 H 1.08996 * 109.52366 * 303.06175 * 19 17 16 42 42 H 1.09001 * 109.51551 * 63.25139 * 19 17 16 43 43 H 1.09006 * 109.40267 * 297.49521 * 20 19 17 44 44 H 1.08993 * 109.48944 * 177.51172 * 20 19 17 45 45 H 1.08997 * 109.48306 * 301.17008 * 22 21 20 46 46 H 1.09001 * 109.48935 * 181.14822 * 22 21 20 47 47 H 1.08994 * 109.52678 * 182.47822 * 23 22 21 48 48 H 1.09005 * 109.57669 * 62.32467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 3.9076 0.3452 -2.0136 7 6 3.9953 2.6401 -2.9491 8 7 3.0381 2.9829 -3.7259 9 14 5.7493 3.1417 -3.3505 10 1 6.5869 1.9263 -3.5129 11 1 5.7636 3.9255 -4.6117 12 1 6.2916 3.9727 -2.2457 13 6 2.2430 2.0165 1.1673 14 8 2.6480 3.1633 1.1673 15 6 1.9983 1.3228 2.4412 16 6 2.2824 1.9258 3.5919 17 6 3.5928 2.6511 3.7592 18 6 4.2050 2.2957 5.1156 19 6 3.3552 4.1625 3.6843 20 6 4.7006 4.8877 3.7739 21 8 5.5568 4.4354 2.7230 22 6 5.8521 3.0381 2.7717 23 6 4.5534 2.2385 2.6396 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0956 3.1411 -1.1382 31 1 4.3863 2.1342 -0.9131 32 1 3.6994 -0.2396 -1.1177 33 1 3.2287 0.0425 -2.8109 34 1 4.9369 0.1741 -2.3287 35 1 3.2233 3.5037 -4.5230 36 1 1.5879 0.3238 2.4419 37 1 1.5722 1.8996 4.4051 38 1 4.2636 1.2119 5.2151 39 1 5.2060 2.7216 5.1852 40 1 3.5816 2.7006 5.9128 41 1 2.8722 4.4090 2.7388 42 1 2.7171 4.4722 4.5120 43 1 5.1636 4.6743 4.7374 44 1 4.5420 5.9617 3.6768 45 1 6.3303 2.8005 3.7219 46 1 6.5231 2.7795 1.9525 47 1 4.7713 1.1737 2.7206 48 1 4.0949 2.4438 1.6723 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493302236.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:51 Heat of formation + Delta-G solvation = -16.030399 kcal Electronic energy + Delta-G solvation = -26688.167335 eV Core-core repulsion = 23246.037548 eV Total energy + Delta-G solvation = -3442.129787 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.201 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78419 -40.24295 -38.31769 -36.76386 -36.34933 -33.61019 -32.42494 -31.80493 -31.31627 -28.80359 -27.79071 -25.83112 -24.64543 -24.38618 -24.18419 -22.53129 -20.29185 -19.94108 -18.84826 -18.26848 -17.90513 -17.18281 -16.98776 -16.54160 -16.21931 -15.75603 -15.65272 -15.38300 -15.26268 -14.92026 -14.71211 -14.63711 -14.36785 -14.09605 -13.98886 -13.80559 -13.52887 -13.14862 -13.05730 -12.89444 -12.86651 -12.62464 -12.41218 -12.32140 -12.22118 -12.04295 -11.96376 -11.84013 -11.56459 -11.45422 -11.30951 -10.97498 -10.56915 -10.19436 -9.96263 -9.49863 -9.26223 0.01663 0.84278 1.09005 1.39008 1.73899 1.89029 2.13224 2.30697 3.18087 3.55490 3.64528 3.72976 3.81270 3.93251 4.00781 4.02140 4.13772 4.24618 4.28249 4.31433 4.35672 4.41166 4.43655 4.51195 4.55281 4.66101 4.68825 4.72653 4.76214 4.80057 4.81522 4.82767 4.91823 4.93292 4.97354 5.01587 5.08121 5.12531 5.19534 5.22557 5.24694 5.32410 5.37579 5.43703 5.56002 5.59579 5.85567 6.50434 6.52235 6.89546 7.38245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.610 5.610 4 C 0.134 3.866 5 C -0.077 4.077 6 C -0.145 4.145 7 C 0.006 3.994 8 N -0.632 5.632 9 Si 0.925 3.075 10 H -0.236 1.236 11 H -0.248 1.248 12 H -0.232 1.232 13 C 0.549 3.451 14 O -0.521 6.521 15 C -0.254 4.254 16 C -0.026 4.026 17 C -0.038 4.038 18 C -0.143 4.143 19 C -0.149 4.149 20 C 0.063 3.937 21 O -0.378 6.378 22 C 0.064 3.936 23 C -0.182 4.182 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.337 0.663 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -4.835 1.087 4.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.024 4.024 3 N -0.342 5.342 4 C 0.012 3.988 5 C -0.098 4.098 6 C -0.204 4.204 7 C -0.244 4.244 8 N -0.244 5.244 9 Si 0.741 3.259 10 H -0.158 1.158 11 H -0.171 1.171 12 H -0.154 1.154 13 C 0.342 3.658 14 O -0.402 6.402 15 C -0.274 4.274 16 C -0.046 4.046 17 C -0.038 4.038 18 C -0.200 4.200 19 C -0.187 4.187 20 C -0.014 4.014 21 O -0.296 6.296 22 C -0.012 4.012 23 C -0.219 4.219 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.080 0.920 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.376 -4.021 0.718 4.102 hybrid contribution 0.127 -0.150 -0.050 0.203 sum -0.249 -4.170 0.669 4.231 Atomic orbital electron populations 1.22234 0.95700 1.02474 1.02837 1.21768 0.94662 0.82499 1.03511 1.47982 1.66017 1.14125 1.06046 1.21337 0.94806 0.98788 0.83910 1.20813 0.98954 0.95421 0.94565 1.21891 1.02348 0.93871 1.02257 1.30162 1.04209 0.94223 0.95778 1.68160 1.38134 1.11022 1.07130 0.85868 0.75814 0.82245 0.82008 1.15830 1.17127 1.15433 1.18560 0.76645 0.86695 0.83851 1.90696 1.44484 1.17907 1.87089 1.22656 1.11732 1.00502 0.92537 1.23834 0.93008 0.90709 0.97046 1.19835 0.92212 0.95978 0.95741 1.21955 1.01181 1.01741 0.95134 1.22400 0.98400 0.93174 1.04699 1.22538 0.89871 0.98847 0.90102 1.87945 1.67501 1.23478 1.50695 1.22519 0.96043 0.81652 1.01035 1.23121 0.96532 0.99179 1.03064 0.92106 0.91383 0.92238 0.89585 0.90182 0.89549 0.89586 0.88963 0.91372 0.91970 0.92154 0.84610 0.84623 0.85415 0.92289 0.91636 0.92140 0.87826 0.91692 0.93645 0.89210 0.93736 0.89443 0.91991 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.39 10.24 37.16 0.38 0.77 16 2 C 0.10 -0.24 4.89 -4.04 -0.02 -0.26 16 3 N -0.61 0.04 2.30 -175.08 -0.40 -0.37 16 4 C 0.13 0.10 4.29 -4.04 -0.02 0.09 16 5 C -0.08 0.01 2.52 -91.77 -0.23 -0.23 16 6 C -0.15 0.25 8.11 37.16 0.30 0.55 16 7 C 0.01 0.00 4.83 -13.90 -0.07 -0.07 16 8 N -0.63 -0.63 12.81 56.23 0.72 0.09 16 9 Si 0.92 -0.15 29.29 -169.99 -4.98 -5.13 16 10 H -0.24 0.03 7.11 56.52 0.40 0.43 16 11 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 12 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 13 C 0.55 0.91 5.93 -12.66 -0.08 0.83 16 14 O -0.52 -2.39 10.59 5.26 0.06 -2.33 16 15 C -0.25 0.07 8.29 -37.81 -0.31 -0.25 16 16 C -0.03 0.01 8.44 -36.13 -0.31 -0.30 16 17 C -0.04 -0.03 0.50 -155.47 -0.08 -0.10 16 18 C -0.14 0.09 7.89 37.16 0.29 0.38 16 19 C -0.15 -0.29 4.75 -26.58 -0.13 -0.42 16 20 C 0.06 0.15 6.57 37.21 0.24 0.39 16 21 O -0.38 -1.74 10.77 -35.23 -0.38 -2.12 16 22 C 0.06 0.14 6.57 37.20 0.24 0.38 16 23 C -0.18 -0.28 3.87 -26.59 -0.10 -0.38 16 24 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 25 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 26 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 27 H 0.09 -0.28 5.98 -51.93 -0.31 -0.59 16 28 H 0.08 -0.28 6.14 -51.93 -0.32 -0.60 16 29 H 0.09 0.05 7.91 -51.93 -0.41 -0.36 16 30 H 0.09 0.27 7.42 -51.93 -0.39 -0.12 16 31 H 0.09 0.04 7.85 -51.93 -0.41 -0.36 16 32 H 0.07 -0.16 5.89 -51.93 -0.31 -0.47 16 33 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.06 -0.12 7.94 -51.93 -0.41 -0.53 16 35 H 0.34 -0.08 8.23 -40.82 -0.34 -0.42 16 36 H 0.14 -0.32 6.28 -52.48 -0.33 -0.65 16 37 H 0.13 -0.25 8.06 -52.49 -0.42 -0.67 16 38 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 39 H 0.06 -0.01 5.06 -51.93 -0.26 -0.28 16 40 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 41 H 0.10 0.47 5.54 -51.93 -0.29 0.18 16 42 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 43 H 0.05 0.05 6.77 -51.93 -0.35 -0.30 16 44 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.04 0.05 6.46 -51.93 -0.34 -0.29 16 46 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 47 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 48 H 0.12 0.38 3.35 -54.20 -0.18 0.19 16 LS Contribution 355.04 15.07 5.35 5.35 Total: 0.00 -4.41 355.04 -7.59 -11.99 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -8.08 Total: -8.89 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 0.13 Total: 1.40 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: 0.32 Total: -0.28 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.32 Total: -4.45 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: -4.98 Total: -5.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -4.41 -7.59 -11.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493302236.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.036 kcal (2) G-P(sol) polarization free energy of solvation -4.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds