Wall clock time and date at job start Tue Mar 31 2020 07:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47200 * 2 1 4 4 C 1.46496 * 120.00115 * 270.00509 * 3 2 1 5 5 C 1.53000 * 109.46986 * 269.99621 * 4 3 2 6 6 C 1.53004 * 109.47190 * 64.99929 * 5 4 3 7 7 C 1.50696 * 109.47441 * 185.00314 * 5 4 3 8 8 N 1.27951 * 119.99519 * 334.99821 * 7 5 4 9 9 Si 1.86799 * 120.00300 * 155.00133 * 7 5 4 10 10 H 1.48496 * 109.47184 * 60.00202 * 9 7 5 11 11 H 1.48502 * 109.46905 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47140 * 299.99660 * 9 7 5 13 13 C 1.34778 * 119.99449 * 90.00033 * 3 2 1 14 14 O 1.21618 * 119.99674 * 180.02562 * 13 3 2 15 15 C 1.47103 * 120.00345 * 0.02562 * 13 3 2 16 16 C 1.32986 * 120.00067 * 176.67358 * 15 13 3 17 17 C 1.50699 * 120.00069 * 314.47707 * 16 15 13 18 18 C 1.52997 * 109.54395 * 224.70589 * 17 16 15 19 19 C 1.53185 * 109.54620 * 104.52630 * 17 16 15 20 20 C 1.53102 * 109.15982 * 183.24332 * 19 17 16 21 21 O 1.42905 * 109.48549 * 57.47323 * 20 19 17 22 22 C 1.42896 * 114.09811 * 298.89000 * 21 20 19 23 23 C 1.53085 * 109.41890 * 61.15868 * 22 21 20 24 24 H 1.08997 * 109.47100 * 59.99554 * 1 2 3 25 25 H 1.08996 * 109.47097 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46838 * 299.99553 * 1 2 3 27 27 H 1.09002 * 109.46838 * 240.00447 * 2 1 3 28 28 H 1.08997 * 109.47100 * 120.00446 * 2 1 3 29 29 H 1.08999 * 109.47242 * 29.99663 * 4 3 2 30 30 H 1.09000 * 109.47044 * 150.00359 * 4 3 2 31 31 H 1.09005 * 109.47354 * 305.00377 * 5 4 3 32 32 H 1.08998 * 109.47317 * 300.00411 * 6 5 4 33 33 H 1.09005 * 109.46606 * 59.99990 * 6 5 4 34 34 H 1.09001 * 109.47232 * 179.97438 * 6 5 4 35 35 H 0.96999 * 119.99587 * 179.97438 * 8 7 5 36 36 H 1.08004 * 119.99669 * 356.66877 * 15 13 3 37 37 H 1.08002 * 120.00185 * 134.19920 * 16 15 13 38 38 H 1.08999 * 109.47281 * 53.12221 * 18 17 16 39 39 H 1.09007 * 109.47063 * 173.11865 * 18 17 16 40 40 H 1.08999 * 109.47347 * 293.11736 * 18 17 16 41 41 H 1.08996 * 109.52366 * 303.06175 * 19 17 16 42 42 H 1.09001 * 109.51551 * 63.25139 * 19 17 16 43 43 H 1.09006 * 109.40267 * 297.49521 * 20 19 17 44 44 H 1.08993 * 109.48944 * 177.51172 * 20 19 17 45 45 H 1.08997 * 109.48306 * 301.17008 * 22 21 20 46 46 H 1.09001 * 109.48935 * 181.14822 * 22 21 20 47 47 H 1.08994 * 109.52678 * 182.47822 * 23 22 21 48 48 H 1.09005 * 109.57669 * 62.32467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 3.9076 0.3452 -2.0136 7 6 3.9953 2.6401 -2.9491 8 7 3.0381 2.9829 -3.7259 9 14 5.7493 3.1417 -3.3505 10 1 6.5869 1.9263 -3.5129 11 1 5.7636 3.9255 -4.6117 12 1 6.2916 3.9727 -2.2457 13 6 2.2430 2.0165 1.1673 14 8 2.6480 3.1633 1.1673 15 6 1.9983 1.3228 2.4412 16 6 2.2824 1.9258 3.5919 17 6 3.5928 2.6511 3.7592 18 6 4.2050 2.2957 5.1156 19 6 3.3552 4.1625 3.6843 20 6 4.7006 4.8877 3.7739 21 8 5.5568 4.4354 2.7230 22 6 5.8521 3.0381 2.7717 23 6 4.5534 2.2385 2.6396 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0956 3.1411 -1.1382 31 1 4.3863 2.1342 -0.9131 32 1 3.6994 -0.2396 -1.1177 33 1 3.2287 0.0425 -2.8109 34 1 4.9369 0.1741 -2.3287 35 1 3.2233 3.5037 -4.5230 36 1 1.5879 0.3238 2.4419 37 1 1.5722 1.8996 4.4051 38 1 4.2636 1.2119 5.2151 39 1 5.2060 2.7216 5.1852 40 1 3.5816 2.7006 5.9128 41 1 2.8722 4.4090 2.7388 42 1 2.7171 4.4722 4.5120 43 1 5.1636 4.6743 4.7374 44 1 4.5420 5.9617 3.6768 45 1 6.3303 2.8005 3.7219 46 1 6.5231 2.7795 1.9525 47 1 4.7713 1.1737 2.7206 48 1 4.0949 2.4438 1.6723 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493302236.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:50 Heat of formation + Delta-G solvation = -8.568817 kcal Electronic energy + Delta-G solvation = -26687.843776 eV Core-core repulsion = 23246.037548 eV Total energy + Delta-G solvation = -3441.806229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.201 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84918 -40.33459 -38.38915 -36.81617 -36.42429 -33.61697 -32.44637 -31.92015 -31.23336 -28.84418 -27.77402 -25.82716 -24.70955 -24.52270 -24.08621 -22.55532 -20.32449 -19.99392 -18.87526 -18.28018 -17.93823 -17.27787 -17.10978 -16.63303 -16.32083 -15.80642 -15.76769 -15.41080 -15.29210 -14.81341 -14.74000 -14.65973 -14.37232 -14.04931 -13.98946 -13.81398 -13.46092 -13.21669 -13.10187 -12.86600 -12.79507 -12.56991 -12.37191 -12.35613 -12.21599 -12.09006 -11.94517 -11.81309 -11.67863 -11.51720 -11.35853 -11.05454 -10.69305 -10.33812 -10.01930 -9.53701 -9.24505 0.04518 0.79864 1.05439 1.35849 1.69665 1.85024 2.12788 2.28307 3.02150 3.55114 3.66693 3.71770 3.81414 3.95397 4.03546 4.10665 4.14144 4.19524 4.26237 4.32963 4.37772 4.43094 4.44087 4.53560 4.65649 4.66648 4.68051 4.70808 4.71530 4.83203 4.84627 4.88878 4.90135 4.94632 4.99628 5.07309 5.08174 5.15491 5.21186 5.24166 5.32782 5.37281 5.38943 5.40543 5.47150 5.57740 5.81101 6.33423 6.52572 6.87925 7.33386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 N -0.606 5.606 4 C 0.141 3.859 5 C -0.077 4.077 6 C -0.141 4.141 7 C 0.004 3.996 8 N -0.648 5.648 9 Si 0.957 3.043 10 H -0.228 1.228 11 H -0.255 1.255 12 H -0.257 1.257 13 C 0.541 3.459 14 O -0.558 6.558 15 C -0.254 4.254 16 C -0.029 4.029 17 C -0.039 4.039 18 C -0.139 4.139 19 C -0.146 4.146 20 C 0.059 3.941 21 O -0.407 6.407 22 C 0.058 3.942 23 C -0.180 4.180 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.342 0.658 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 -6.774 1.901 7.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.337 5.337 4 C 0.018 3.982 5 C -0.097 4.097 6 C -0.200 4.200 7 C -0.245 4.245 8 N -0.261 5.261 9 Si 0.774 3.226 10 H -0.150 1.150 11 H -0.178 1.178 12 H -0.181 1.181 13 C 0.335 3.665 14 O -0.441 6.441 15 C -0.274 4.274 16 C -0.048 4.048 17 C -0.039 4.039 18 C -0.196 4.196 19 C -0.183 4.183 20 C -0.018 4.018 21 O -0.327 6.327 22 C -0.018 4.018 23 C -0.216 4.216 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.159 0.841 36 H 0.178 0.822 37 H 0.167 0.833 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.533 -5.993 1.517 6.205 hybrid contribution 0.165 0.504 -0.321 0.620 sum -0.367 -5.489 1.196 5.630 Atomic orbital electron populations 1.22203 0.95742 1.03135 1.01816 1.21972 0.94565 0.81140 1.04968 1.48048 1.65447 1.14943 1.05292 1.21155 0.95486 0.97120 0.84441 1.20813 0.98051 0.96747 0.94130 1.21880 1.02883 0.92364 1.02833 1.30331 1.04531 0.93906 0.95720 1.68166 1.38612 1.11661 1.07692 0.85405 0.75020 0.81697 0.80431 1.15023 1.17828 1.18069 1.18975 0.76197 0.86482 0.84839 1.90699 1.46217 1.19586 1.87620 1.22781 1.11861 1.01364 0.91432 1.24033 0.92819 0.90102 0.97863 1.19867 0.92855 0.94948 0.96187 1.21919 1.00884 1.02386 0.94369 1.22314 0.98004 0.94475 1.03544 1.22645 0.90049 0.98858 0.90205 1.87895 1.68057 1.24921 1.51787 1.22658 0.96652 0.80763 1.01704 1.23049 0.96256 0.99595 1.02743 0.93444 0.89829 0.92949 0.88417 0.88401 0.89418 0.92685 0.89819 0.90324 0.91756 0.91441 0.84063 0.82241 0.83302 0.91309 0.92154 0.91232 0.90709 0.90504 0.92217 0.89465 0.92535 0.89406 0.90869 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.87 10.24 71.98 0.74 1.61 16 2 C 0.10 -0.55 4.89 86.38 0.42 -0.13 16 3 N -0.61 -0.28 2.30 -826.08 -1.90 -2.18 16 4 C 0.14 0.43 4.29 86.38 0.37 0.80 16 5 C -0.08 -0.07 2.52 -11.54 -0.03 -0.10 16 6 C -0.14 0.54 8.11 71.98 0.58 1.12 16 7 C 0.00 0.01 4.83 88.67 0.43 0.44 16 8 N -0.65 -2.10 12.81 24.11 0.31 -1.80 16 9 Si 0.96 0.55 29.29 68.60 2.01 2.56 16 10 H -0.23 0.15 7.11 99.48 0.71 0.85 16 11 H -0.25 -0.40 7.11 99.48 0.71 0.31 16 12 H -0.26 -1.16 7.11 99.48 0.71 -0.45 16 13 C 0.54 2.26 5.93 86.57 0.51 2.77 16 14 O -0.56 -6.39 10.59 -4.09 -0.04 -6.43 16 15 C -0.25 0.31 8.29 23.43 0.19 0.50 16 16 C -0.03 0.04 8.44 24.52 0.21 0.24 16 17 C -0.04 -0.05 0.50 -52.81 -0.03 -0.07 16 18 C -0.14 0.34 7.89 71.98 0.57 0.91 16 19 C -0.15 -0.71 4.75 30.69 0.15 -0.56 16 20 C 0.06 0.35 6.57 72.02 0.47 0.82 16 21 O -0.41 -4.45 10.77 -148.98 -1.60 -6.06 16 22 C 0.06 0.31 6.57 72.01 0.47 0.78 16 23 C -0.18 -0.63 3.87 30.68 0.12 -0.51 16 24 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.10 -0.77 5.98 -2.39 -0.01 -0.79 16 28 H 0.10 -0.89 6.14 -2.39 -0.01 -0.91 16 29 H 0.09 0.21 7.91 -2.39 -0.02 0.19 16 30 H 0.05 0.51 7.42 -2.39 -0.02 0.50 16 31 H 0.08 0.23 7.85 -2.38 -0.02 0.21 16 32 H 0.08 -0.46 5.89 -2.39 -0.01 -0.47 16 33 H 0.06 -0.24 8.14 -2.38 -0.02 -0.26 16 34 H 0.07 -0.33 7.94 -2.39 -0.02 -0.34 16 35 H 0.34 0.24 8.23 -92.71 -0.76 -0.52 16 36 H 0.16 -1.07 6.28 -2.91 -0.02 -1.09 16 37 H 0.15 -0.84 8.06 -2.91 -0.02 -0.87 16 38 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.06 -0.08 5.06 -2.38 -0.01 -0.09 16 40 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.07 0.85 5.54 -2.39 -0.01 0.84 16 42 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.06 0.15 6.77 -2.38 -0.02 0.14 16 44 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.06 0.13 6.46 -2.39 -0.02 0.12 16 46 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.10 0.81 3.35 -38.47 -0.13 0.68 16 Total: 0.00 -12.68 355.04 4.77 -7.91 By element: Atomic # 1 Polarization: -3.44 SS G_CDS: 0.82 Total: -2.62 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.18 Total: 8.62 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -1.59 Total: -3.98 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.65 Total: -12.49 kcal Atomic # 14 Polarization: 0.55 SS G_CDS: 2.01 Total: 2.56 kcal Total: -12.68 4.77 -7.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493302236.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.663 kcal (2) G-P(sol) polarization free energy of solvation -12.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds