Wall clock time and date at job start Tue Mar 31 2020 07:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.41935 * 2 1 4 4 O 1.44428 * 110.37258 * 122.30818 * 2 1 3 5 5 C 1.44419 * 105.27677 * 159.34272 * 4 2 1 6 6 H 1.09004 * 110.37390 * 78.31756 * 5 4 2 7 7 C 1.52999 * 110.37710 * 200.55179 * 5 4 2 8 8 C 1.54489 * 104.80580 * 319.49256 * 5 4 2 9 9 H 1.08996 * 110.51026 * 265.33436 * 8 5 4 10 10 C 1.53001 * 110.51183 * 142.62000 * 8 5 4 11 11 C 1.54482 * 110.37463 * 237.69254 * 2 1 3 12 12 H 1.08997 * 110.51512 * 98.54388 * 11 2 1 13 13 C 1.50702 * 110.51036 * 335.83489 * 11 2 1 14 14 O 1.21282 * 120.00179 * 275.35732 * 13 11 2 15 15 N 1.34772 * 119.99891 * 95.35670 * 13 11 2 16 16 C 1.46502 * 119.99812 * 185.45045 * 15 13 11 17 17 C 1.50696 * 109.47505 * 89.99782 * 16 15 13 18 18 H 1.08002 * 119.99660 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00071 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46735 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47141 * 120.00270 * 21 19 17 24 24 H 1.48500 * 109.46880 * 240.00514 * 21 19 17 25 25 C 1.46496 * 120.00192 * 5.44347 * 15 13 11 26 26 C 1.53005 * 109.46774 * 85.50002 * 25 15 13 27 27 C 1.53006 * 117.49620 * 243.74853 * 26 25 15 28 28 C 1.53005 * 117.49750 * 175.09191 * 26 25 15 29 29 H 1.08998 * 109.47513 * 294.60459 * 1 2 3 30 30 H 1.09002 * 109.46576 * 54.60511 * 1 2 3 31 31 H 1.08996 * 109.46996 * 174.60119 * 1 2 3 32 32 H 1.08995 * 109.47470 * 58.54187 * 7 5 4 33 33 H 1.09000 * 109.47501 * 178.55259 * 7 5 4 34 34 H 1.09004 * 109.46628 * 298.54747 * 7 5 4 35 35 H 1.09002 * 109.46910 * 61.45650 * 10 8 5 36 36 H 1.09004 * 109.46717 * 181.45560 * 10 8 5 37 37 H 1.08996 * 109.47418 * 301.45584 * 10 8 5 38 38 H 1.09001 * 109.46561 * 209.99830 * 16 15 13 39 39 H 1.09001 * 109.47294 * 329.99301 * 16 15 13 40 40 H 0.97007 * 119.99522 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.47655 * 205.49897 * 25 15 13 42 42 H 1.09006 * 109.47360 * 325.50336 * 25 15 13 43 43 H 1.08997 * 115.55303 * 29.41553 * 26 25 15 44 44 H 1.08999 * 117.50167 * 359.97438 * 27 26 25 45 45 H 1.08996 * 117.49856 * 145.02292 * 27 26 25 46 46 H 1.09004 * 117.49513 * 214.98229 * 28 26 25 47 47 H 1.08995 * 117.49723 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 8 2.0328 -0.7236 1.1443 5 6 3.3873 -1.0871 0.7996 6 1 4.0525 -0.2323 0.9221 7 6 3.8611 -2.2577 1.6635 8 6 3.3178 -1.5057 -0.6859 9 1 3.1956 -2.5852 -0.7732 10 6 4.5715 -1.0446 -1.4320 11 6 2.0678 -0.7740 -1.2240 12 1 2.3430 -0.0839 -2.0216 13 6 1.0444 -1.7665 -1.7125 14 8 0.9726 -2.8644 -1.2021 15 7 0.2091 -1.4342 -2.7165 16 6 -0.8627 -2.3515 -3.1116 17 6 -2.1046 -2.0462 -2.3144 18 1 -2.0964 -1.2483 -1.5865 19 6 -3.2515 -2.7847 -2.5150 20 7 -3.2615 -3.7559 -3.4017 21 14 -4.7911 -2.4057 -1.5273 22 1 -4.5206 -1.2750 -0.6034 23 1 -5.8935 -2.0367 -2.4512 24 1 -5.1830 -3.6039 -0.7424 25 6 0.3727 -0.1557 -3.4127 26 6 1.4031 -0.3132 -4.5328 27 6 2.6950 0.4992 -4.4236 28 6 1.6324 0.8856 -5.4554 29 1 -0.3634 0.4279 0.9343 30 1 -0.3632 0.5953 -0.8378 31 1 -0.3633 -1.0231 -0.0967 32 1 3.1950 -3.1084 1.5196 33 1 4.8743 -2.5363 1.3739 34 1 3.8514 -1.9621 2.7126 35 1 5.4499 -1.5183 -0.9937 36 1 4.4932 -1.3256 -2.4823 37 1 4.6646 0.0384 -1.3515 38 1 -1.0734 -2.2280 -4.1739 39 1 -0.5513 -3.3783 -2.9199 40 1 -4.0686 -4.2752 -3.5430 41 1 -0.5826 0.1512 -3.8384 42 1 0.7159 0.6010 -2.7071 43 1 1.4698 -1.3077 -4.9738 44 1 2.8108 1.1462 -3.5540 45 1 3.6115 0.0393 -4.7932 46 1 1.8502 0.6797 -6.5035 47 1 1.0489 1.7863 -5.2647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528414043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:32 Heat of formation + Delta-G solvation = -66.030763 kcal Electronic energy + Delta-G solvation = -26152.280809 eV Core-core repulsion = 22721.638583 eV Total energy + Delta-G solvation = -3430.642226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53373 -38.31796 -37.08631 -34.44995 -33.55460 -32.80289 -32.17506 -29.19621 -28.17104 -27.00311 -25.89453 -23.54607 -22.78837 -22.33635 -21.41617 -20.66047 -20.25357 -18.11661 -16.83779 -16.47091 -16.07154 -15.63679 -15.46180 -14.96414 -14.67832 -14.42956 -14.05070 -13.57977 -13.38948 -13.11045 -12.83536 -12.66910 -12.34616 -12.25807 -12.16489 -11.85937 -11.75795 -11.58316 -11.50313 -11.32911 -11.25920 -11.12682 -10.86957 -10.66448 -10.54873 -10.44791 -10.43120 -10.34075 -10.07178 -9.85130 -9.56229 -9.54511 -8.75512 -8.42271 -7.63712 -6.03094 -4.07542 3.30404 3.35805 3.39098 3.43040 3.76614 3.98755 4.01042 4.45560 4.63054 4.71297 4.92287 4.94749 4.99684 5.02607 5.19180 5.25237 5.31188 5.39850 5.41520 5.47184 5.49477 5.53509 5.57839 5.64637 5.71927 5.75784 5.84466 5.93772 5.95562 5.97247 6.04579 6.05459 6.14012 6.20797 6.25119 6.28222 6.43301 6.44920 6.71766 7.07163 7.14376 7.47985 7.58815 7.94314 8.25098 8.45354 8.92559 9.14567 9.57941 11.05011 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.006199 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.161691 B = 4516.069507 C = 5787.587124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 H 0.069 0.931 4 O -0.361 6.361 5 C 0.078 3.922 6 H 0.064 0.936 7 C -0.146 4.146 8 C -0.111 4.111 9 H 0.100 0.900 10 C -0.141 4.141 11 C -0.146 4.146 12 H 0.102 0.898 13 C 0.527 3.473 14 O -0.536 6.536 15 N -0.595 5.595 16 C 0.245 3.755 17 C -0.525 4.525 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.141 3.859 26 C -0.165 4.165 27 C -0.186 4.186 28 C -0.176 4.176 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.262 0.738 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.919 10.763 1.027 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.086 0.914 4 O -0.281 6.281 5 C 0.020 3.980 6 H 0.081 0.919 7 C -0.203 4.203 8 C -0.130 4.130 9 H 0.118 0.882 10 C -0.198 4.198 11 C -0.168 4.168 12 H 0.120 0.880 13 C 0.314 3.686 14 O -0.413 6.413 15 N -0.326 5.326 16 C 0.126 3.874 17 C -0.564 4.564 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.017 3.983 26 C -0.185 4.185 27 C -0.222 4.222 28 C -0.213 4.213 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.611 9.963 1.414 17.741 hybrid contribution -0.840 0.304 0.119 0.901 sum 13.771 10.267 1.533 17.245 Atomic orbital electron populations 1.22041 0.92253 1.05140 1.02136 1.22775 0.96007 0.94019 0.83831 0.91353 1.89179 1.26822 1.74480 1.37591 1.22972 0.84769 0.96754 0.93512 0.91857 1.21784 1.01026 0.97981 0.99479 1.22574 0.93288 1.02696 0.94423 0.88163 1.21810 0.96639 1.00824 1.00515 1.22994 0.95930 0.98368 0.99520 0.87996 1.19793 0.81462 0.87535 0.79849 1.90656 1.70928 1.22898 1.56788 1.48145 1.31736 1.19391 1.33329 1.19286 0.83237 0.89438 0.95394 1.21497 0.95536 1.17440 1.21888 0.92133 1.24924 0.98883 0.94887 0.95352 1.69947 1.28597 1.20780 1.34025 0.86496 0.82889 0.78372 0.80012 1.19728 1.21033 1.20919 1.21030 0.98501 0.86563 0.92250 1.22981 0.97864 0.96927 1.00697 1.23059 0.93565 1.04102 1.01522 1.22913 1.02907 0.99319 0.96192 0.92070 0.90936 0.89708 0.91201 0.91516 0.92205 0.92345 0.92122 0.92695 0.95107 0.93880 0.92837 0.89354 0.91667 0.87415 0.88997 0.89129 0.88985 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 8.81 37.16 0.33 -2.43 16 2 C 0.09 1.43 3.83 -25.95 -0.10 1.33 16 3 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 4 O -0.36 -6.18 11.04 -35.23 -0.39 -6.57 16 5 C 0.08 1.07 3.47 -25.95 -0.09 0.98 16 6 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 7 C -0.15 -1.82 9.53 37.16 0.35 -1.46 16 8 C -0.11 -1.58 2.77 -89.04 -0.25 -1.83 16 9 H 0.10 1.71 6.65 -51.93 -0.35 1.36 16 10 C -0.14 -1.48 8.94 37.16 0.33 -1.15 16 11 C -0.15 -2.29 2.22 -90.20 -0.20 -2.49 16 12 H 0.10 1.35 3.77 -51.93 -0.20 1.15 16 13 C 0.53 10.87 4.40 -10.99 -0.05 10.82 16 14 O -0.54 -13.56 15.24 5.56 0.08 -13.48 16 15 N -0.60 -12.20 2.33 -175.06 -0.41 -12.60 16 16 C 0.25 6.30 5.18 -5.19 -0.03 6.27 16 17 C -0.52 -14.51 9.39 -34.44 -0.32 -14.84 16 18 H 0.06 1.65 7.42 -52.49 -0.39 1.26 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 21 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.14 2.23 5.06 -4.04 -0.02 2.21 16 26 C -0.17 -2.23 5.83 -90.61 -0.53 -2.76 16 27 C -0.19 -1.96 9.17 -26.69 -0.24 -2.21 16 28 C -0.18 -1.89 10.25 -26.69 -0.27 -2.16 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.17 7.02 -51.93 -0.36 0.80 16 31 H 0.08 1.86 6.12 -51.93 -0.32 1.55 16 32 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.04 1.27 7.35 -51.93 -0.38 0.89 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.09 1.46 8.04 -51.93 -0.42 1.04 16 42 H 0.07 0.89 5.39 -51.93 -0.28 0.61 16 43 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.09 0.88 7.14 -51.93 -0.37 0.51 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -32.37 367.91 -8.74 -41.11 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.10 Total: 3.04 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.19 Total: -8.07 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.33 Total: -38.37 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.30 Total: -20.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.37 -8.74 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528414043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.923 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds