Wall clock time and date at job start Tue Mar 31 2020 07:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.41935 * 2 1 4 4 O 1.44428 * 110.37258 * 122.30818 * 2 1 3 5 5 C 1.44419 * 105.27677 * 159.34272 * 4 2 1 6 6 H 1.09004 * 110.37390 * 78.31756 * 5 4 2 7 7 C 1.52999 * 110.37710 * 200.55179 * 5 4 2 8 8 C 1.54489 * 104.80580 * 319.49256 * 5 4 2 9 9 H 1.08996 * 110.51026 * 265.33436 * 8 5 4 10 10 C 1.53001 * 110.51183 * 142.62000 * 8 5 4 11 11 C 1.54482 * 110.37463 * 237.69254 * 2 1 3 12 12 H 1.08997 * 110.51512 * 98.54388 * 11 2 1 13 13 C 1.50702 * 110.51036 * 335.83489 * 11 2 1 14 14 O 1.21282 * 120.00179 * 275.35732 * 13 11 2 15 15 N 1.34772 * 119.99891 * 95.35670 * 13 11 2 16 16 C 1.46502 * 119.99812 * 185.45045 * 15 13 11 17 17 C 1.50696 * 109.47505 * 89.99782 * 16 15 13 18 18 H 1.08002 * 119.99660 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00071 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46735 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47141 * 120.00270 * 21 19 17 24 24 H 1.48500 * 109.46880 * 240.00514 * 21 19 17 25 25 C 1.46496 * 120.00192 * 5.44347 * 15 13 11 26 26 C 1.53005 * 109.46774 * 85.50002 * 25 15 13 27 27 C 1.53006 * 117.49620 * 243.74853 * 26 25 15 28 28 C 1.53005 * 117.49750 * 175.09191 * 26 25 15 29 29 H 1.08998 * 109.47513 * 294.60459 * 1 2 3 30 30 H 1.09002 * 109.46576 * 54.60511 * 1 2 3 31 31 H 1.08996 * 109.46996 * 174.60119 * 1 2 3 32 32 H 1.08995 * 109.47470 * 58.54187 * 7 5 4 33 33 H 1.09000 * 109.47501 * 178.55259 * 7 5 4 34 34 H 1.09004 * 109.46628 * 298.54747 * 7 5 4 35 35 H 1.09002 * 109.46910 * 61.45650 * 10 8 5 36 36 H 1.09004 * 109.46717 * 181.45560 * 10 8 5 37 37 H 1.08996 * 109.47418 * 301.45584 * 10 8 5 38 38 H 1.09001 * 109.46561 * 209.99830 * 16 15 13 39 39 H 1.09001 * 109.47294 * 329.99301 * 16 15 13 40 40 H 0.97007 * 119.99522 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.47655 * 205.49897 * 25 15 13 42 42 H 1.09006 * 109.47360 * 325.50336 * 25 15 13 43 43 H 1.08997 * 115.55303 * 29.41553 * 26 25 15 44 44 H 1.08999 * 117.50167 * 359.97438 * 27 26 25 45 45 H 1.08996 * 117.49856 * 145.02292 * 27 26 25 46 46 H 1.09004 * 117.49513 * 214.98229 * 28 26 25 47 47 H 1.08995 * 117.49723 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 8 2.0328 -0.7236 1.1443 5 6 3.3873 -1.0871 0.7996 6 1 4.0525 -0.2323 0.9221 7 6 3.8611 -2.2577 1.6635 8 6 3.3178 -1.5057 -0.6859 9 1 3.1956 -2.5852 -0.7732 10 6 4.5715 -1.0446 -1.4320 11 6 2.0678 -0.7740 -1.2240 12 1 2.3430 -0.0839 -2.0216 13 6 1.0444 -1.7665 -1.7125 14 8 0.9726 -2.8644 -1.2021 15 7 0.2091 -1.4342 -2.7165 16 6 -0.8627 -2.3515 -3.1116 17 6 -2.1046 -2.0462 -2.3144 18 1 -2.0964 -1.2483 -1.5865 19 6 -3.2515 -2.7847 -2.5150 20 7 -3.2615 -3.7559 -3.4017 21 14 -4.7911 -2.4057 -1.5273 22 1 -4.5206 -1.2750 -0.6034 23 1 -5.8935 -2.0367 -2.4512 24 1 -5.1830 -3.6039 -0.7424 25 6 0.3727 -0.1557 -3.4127 26 6 1.4031 -0.3132 -4.5328 27 6 2.6950 0.4992 -4.4236 28 6 1.6324 0.8856 -5.4554 29 1 -0.3634 0.4279 0.9343 30 1 -0.3632 0.5953 -0.8378 31 1 -0.3633 -1.0231 -0.0967 32 1 3.1950 -3.1084 1.5196 33 1 4.8743 -2.5363 1.3739 34 1 3.8514 -1.9621 2.7126 35 1 5.4499 -1.5183 -0.9937 36 1 4.4932 -1.3256 -2.4823 37 1 4.6646 0.0384 -1.3515 38 1 -1.0734 -2.2280 -4.1739 39 1 -0.5513 -3.3783 -2.9199 40 1 -4.0686 -4.2752 -3.5430 41 1 -0.5826 0.1512 -3.8384 42 1 0.7159 0.6010 -2.7071 43 1 1.4698 -1.3077 -4.9738 44 1 2.8108 1.1462 -3.5540 45 1 3.6115 0.0393 -4.7932 46 1 1.8502 0.6797 -6.5035 47 1 1.0489 1.7863 -5.2647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528414043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:32 Heat of formation + Delta-G solvation = -86.130417 kcal Electronic energy + Delta-G solvation = -26153.152396 eV Core-core repulsion = 22721.638583 eV Total energy + Delta-G solvation = -3431.513813 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89018 -39.67496 -38.31593 -36.14550 -34.68764 -34.65598 -33.65613 -30.29064 -30.00707 -28.25663 -27.41507 -25.27985 -24.02633 -23.17520 -22.83278 -21.78913 -21.45071 -19.59731 -18.62137 -18.19735 -17.42097 -17.11321 -16.80845 -16.37979 -15.97581 -15.90475 -15.41674 -14.77720 -14.69252 -14.39498 -14.27331 -13.90495 -13.88850 -13.63630 -13.34887 -13.33863 -13.15512 -12.91253 -12.83519 -12.69915 -12.58812 -12.52575 -12.30478 -12.27162 -12.15822 -11.80491 -11.68333 -11.58238 -11.51436 -11.21799 -10.88838 -10.70442 -10.65367 -10.37871 -9.41111 -8.22493 -6.36329 1.33732 1.36627 1.47937 1.80821 2.26002 2.42243 2.86103 2.97165 3.07338 3.44278 3.54733 3.81321 3.89691 3.93160 4.03768 4.12688 4.17211 4.27180 4.32240 4.35067 4.40620 4.46447 4.58152 4.61091 4.68394 4.75009 4.82055 4.85775 4.86671 4.95466 5.01762 5.06189 5.07993 5.09481 5.18783 5.24208 5.26224 5.32592 5.34620 5.35434 5.41501 5.60400 5.86652 6.00066 6.07156 6.72179 6.82117 7.29617 7.52446 8.85090 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.006199 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.161691 B = 4516.069507 C = 5787.587124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 H 0.119 0.881 4 O -0.394 6.394 5 C 0.074 3.926 6 H 0.103 0.897 7 C -0.145 4.145 8 C -0.112 4.112 9 H 0.059 0.941 10 C -0.134 4.134 11 C -0.135 4.135 12 H 0.134 0.866 13 C 0.520 3.480 14 O -0.598 6.598 15 N -0.597 5.597 16 C 0.264 3.736 17 C -0.534 4.534 18 H 0.061 0.939 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.285 1.285 25 C 0.140 3.860 26 C -0.198 4.198 27 C -0.163 4.163 28 C -0.160 4.160 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.032 0.968 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.018 0.982 39 H -0.009 1.009 40 H 0.265 0.735 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.009 14.781 1.469 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.137 0.863 4 O -0.314 6.314 5 C 0.017 3.983 6 H 0.121 0.879 7 C -0.202 4.202 8 C -0.131 4.131 9 H 0.077 0.923 10 C -0.191 4.191 11 C -0.157 4.157 12 H 0.152 0.848 13 C 0.310 3.690 14 O -0.480 6.480 15 N -0.326 5.326 16 C 0.142 3.858 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.192 4.192 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.188 1.188 23 H -0.194 1.194 24 H -0.211 1.211 25 C 0.018 3.982 26 C -0.217 4.217 27 C -0.200 4.200 28 C -0.197 4.197 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.036 0.964 39 H 0.009 0.991 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.133 0.867 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.724 14.032 1.830 21.907 hybrid contribution -1.475 -1.013 -0.043 1.790 sum 15.249 13.018 1.787 20.130 Atomic orbital electron populations 1.21989 0.94375 1.01748 1.03243 1.22985 0.94476 0.96057 0.83070 0.86327 1.89156 1.28857 1.75116 1.38307 1.23269 0.83926 0.98273 0.92815 0.87901 1.21820 1.01691 0.96546 1.00190 1.22590 0.94485 1.00269 0.95776 0.92279 1.21803 0.94829 1.02749 0.99746 1.23028 0.94669 0.97431 1.00544 0.84847 1.20774 0.81772 0.87723 0.78739 1.90619 1.72793 1.25931 1.58620 1.48093 1.30399 1.20270 1.33876 1.18678 0.84495 0.88217 0.94402 1.21768 0.96301 1.17385 1.21822 0.92093 1.25848 1.02354 0.94642 0.96394 1.70076 1.29664 1.21820 1.35560 0.85433 0.78987 0.78162 0.78673 1.18806 1.19359 1.21139 1.21258 0.99087 0.84620 0.93279 1.22685 1.00267 0.97026 1.01767 1.23221 0.92489 1.02246 1.02011 1.23031 1.02472 0.97764 0.96461 0.90976 0.89749 0.95293 0.94828 0.88716 0.91229 0.90678 0.92409 0.89720 0.96402 0.99110 0.92577 0.90633 0.88534 0.90434 0.86711 0.87981 0.88247 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 8.81 71.98 0.63 -4.72 16 2 C 0.09 2.62 3.83 31.10 0.12 2.74 16 3 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 4 O -0.39 -12.93 11.04 -148.98 -1.64 -14.57 16 5 C 0.07 1.85 3.47 31.10 0.11 1.95 16 6 H 0.10 1.81 7.87 -2.38 -0.02 1.79 16 7 C -0.15 -3.48 9.53 71.98 0.69 -2.80 16 8 C -0.11 -3.02 2.77 -9.77 -0.03 -3.05 16 9 H 0.06 2.10 6.65 -2.39 -0.02 2.09 16 10 C -0.13 -2.28 8.94 71.98 0.64 -1.63 16 11 C -0.14 -4.02 2.22 -10.52 -0.02 -4.05 16 12 H 0.13 3.01 3.77 -2.39 -0.01 3.00 16 13 C 0.52 22.47 4.40 87.66 0.39 22.86 16 14 O -0.60 -32.95 15.24 -3.03 -0.05 -33.00 16 15 N -0.60 -25.69 2.33 -826.15 -1.92 -27.61 16 16 C 0.26 14.61 5.18 85.63 0.44 15.05 16 17 C -0.53 -31.07 9.39 25.60 0.24 -30.83 16 18 H 0.06 3.46 7.42 -2.91 -0.02 3.44 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 21 Si 0.96 45.87 29.54 68.60 2.03 47.89 16 22 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 C 0.14 4.36 5.06 86.38 0.44 4.80 16 26 C -0.20 -5.15 5.83 -10.79 -0.06 -5.22 16 27 C -0.16 -2.78 9.17 30.62 0.28 -2.50 16 28 C -0.16 -2.93 10.25 30.62 0.31 -2.62 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 2.59 7.02 -2.39 -0.02 2.57 16 31 H 0.03 1.30 6.12 -2.39 -0.01 1.29 16 32 H 0.03 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 39 H -0.01 -0.60 7.35 -2.39 -0.02 -0.62 16 40 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 41 H 0.08 2.51 8.04 -2.39 -0.02 2.49 16 42 H 0.10 2.35 5.39 -2.38 -0.01 2.34 16 43 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.11 1.47 7.14 -2.39 -0.02 1.46 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -79.27 367.91 4.28 -75.00 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.93 Total: 18.89 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 4.64 Total: -9.18 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.64 Total: -85.04 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -1.69 Total: -47.57 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -79.27 4.28 -75.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528414043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.132 kcal (2) G-P(sol) polarization free energy of solvation -79.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds