Wall clock time and date at job start Tue Mar 31 2020 07:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20752 * 119.99621 * 2 1 4 4 C 1.50700 * 119.99891 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.46708 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47433 * 59.99824 * 5 4 2 7 7 C 1.53000 * 109.46757 * 299.99501 * 5 4 2 8 8 C 1.52997 * 109.46922 * 179.97438 * 5 4 2 9 9 C 1.50700 * 109.47382 * 179.97438 * 8 5 4 10 10 O 1.21283 * 119.99658 * 0.02562 * 9 8 5 11 11 N 1.34773 * 120.00452 * 179.97438 * 9 8 5 12 12 C 1.46926 * 120.63302 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 233.67613 * 12 11 9 14 14 C 1.53035 * 109.31327 * 305.29292 * 13 12 11 15 15 C 1.50709 * 109.45964 * 181.37529 * 14 13 12 16 16 H 1.07997 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99864 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00107 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47199 * 90.00447 * 19 17 15 21 21 H 1.48500 * 109.47216 * 210.00118 * 19 17 15 22 22 H 1.48493 * 109.47310 * 329.99864 * 19 17 15 23 23 C 1.53038 * 109.54175 * 61.36680 * 14 13 12 24 24 C 1.47207 * 120.81153 * 0.14103 * 11 9 8 25 25 H 1.09009 * 109.47006 * 269.99826 * 1 2 3 26 26 H 1.08998 * 109.47804 * 29.99530 * 1 2 3 27 27 H 1.08998 * 109.47445 * 150.00236 * 1 2 3 28 28 H 1.08998 * 109.47509 * 59.99417 * 4 2 1 29 29 H 1.08996 * 109.46681 * 299.99392 * 4 2 1 30 30 H 1.08994 * 109.47133 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.46701 * 299.99947 * 6 5 4 32 32 H 1.09000 * 109.46945 * 59.99623 * 6 5 4 33 33 H 1.09001 * 109.47376 * 299.99774 * 7 5 4 34 34 H 1.09001 * 109.47046 * 60.00841 * 7 5 4 35 35 H 1.09005 * 109.46634 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47350 * 59.99522 * 8 5 4 37 37 H 1.09003 * 109.47457 * 299.99533 * 8 5 4 38 38 H 1.09002 * 109.58861 * 113.81616 * 12 11 9 39 39 H 1.08996 * 109.58519 * 353.53507 * 12 11 9 40 40 H 1.09003 * 109.49975 * 65.24379 * 13 12 11 41 41 H 1.09000 * 109.49553 * 185.30642 * 13 12 11 42 42 H 1.09004 * 109.45942 * 301.34050 * 14 13 12 43 43 H 0.97004 * 120.00396 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.49557 * 58.58503 * 23 14 13 45 45 H 1.08996 * 109.50003 * 178.68400 * 23 14 13 46 46 H 1.08996 * 109.53610 * 6.53712 * 24 11 9 47 47 H 1.09002 * 109.68003 * 246.23180 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.1349 -0.2234 1.2481 7 6 4.1338 -0.2230 -1.2504 8 6 4.5297 -2.3504 -0.0011 9 6 6.0114 -2.0751 -0.0022 10 8 6.4156 -0.9316 -0.0025 11 7 6.8872 -3.0994 -0.0018 12 6 8.3346 -2.8469 -0.0024 13 6 8.9705 -3.6081 -1.1699 14 6 8.5938 -5.0882 -1.0741 15 6 9.2453 -5.8461 -2.2021 16 1 9.8655 -5.3243 -2.9159 17 6 9.0497 -7.2055 -2.3227 18 7 8.2948 -7.8410 -1.4532 19 14 9.8566 -8.1448 -3.7213 20 1 11.1927 -8.6267 -3.2879 21 1 9.0082 -9.3057 -4.0923 22 1 10.0104 -7.2489 -4.8954 23 6 7.0737 -5.2369 -1.1714 24 6 6.4163 -4.4942 -0.0034 25 1 -0.3633 0.0000 1.0278 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 1.9971 -1.8764 -0.8907 29 1 1.9972 -1.8770 0.8892 30 1 5.2064 -0.0238 1.2475 31 1 3.5898 0.7206 1.2485 32 1 3.8719 -0.7951 2.1381 33 1 3.8702 -0.7944 -2.1404 34 1 3.5888 0.7210 -1.2500 35 1 5.2055 -0.0241 -1.2510 36 1 4.2661 -2.9223 -0.8908 37 1 4.2668 -2.9218 0.8892 38 1 8.7662 -3.1920 0.9372 39 1 8.5191 -1.7789 -0.1187 40 1 8.6053 -3.1999 -2.1123 41 1 10.0546 -3.5043 -1.1243 42 1 8.9377 -5.4895 -0.1208 43 1 8.1574 -8.7975 -1.5378 44 1 6.7264 -4.8134 -2.1138 45 1 6.8079 -6.2930 -1.1266 46 1 5.3330 -4.5129 -0.1218 47 1 6.6896 -4.9750 0.9359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530416263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:23 Heat of formation + Delta-G solvation = -88.889201 kcal Electronic energy + Delta-G solvation = -24956.006029 eV Core-core repulsion = 21524.372586 eV Total energy + Delta-G solvation = -3431.633443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52709 -39.47185 -37.20022 -35.56109 -33.52089 -31.46211 -31.15568 -30.13077 -28.25896 -27.27693 -27.00608 -25.92775 -22.99677 -22.32746 -20.76415 -19.69995 -18.81285 -18.04808 -16.94069 -16.20305 -16.09626 -15.59344 -15.25348 -15.16902 -14.83556 -14.56079 -14.07684 -13.76837 -13.36257 -13.13200 -12.96180 -12.93282 -12.67648 -12.42341 -12.39327 -12.24392 -11.96608 -11.63904 -11.34243 -11.14249 -11.05985 -11.01749 -10.91581 -10.87132 -10.63784 -10.55751 -10.39102 -10.12196 -9.66009 -9.50889 -9.17664 -9.03101 -8.87936 -8.39811 -7.95724 -6.05665 -4.11601 1.81847 3.03586 3.26422 3.33520 3.37240 3.46879 3.93241 4.38898 4.61965 4.80472 4.82626 4.96064 5.07901 5.09613 5.23761 5.32651 5.40656 5.45854 5.51539 5.61898 5.69026 5.73179 5.81622 5.84192 5.96459 6.08081 6.16170 6.17088 6.20347 6.23322 6.27829 6.44942 6.46751 6.64130 6.71355 6.75374 6.91308 7.03144 7.15405 7.26295 7.45780 7.64534 7.89745 7.97550 8.02002 8.38057 8.65088 8.91856 9.53606 10.99826 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.003231 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.957142 B = 8665.283080 C = 9125.346212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.352 3.648 3 O -0.444 6.444 4 C -0.166 4.166 5 C -0.033 4.033 6 C -0.163 4.163 7 C -0.163 4.163 8 C -0.132 4.132 9 C 0.513 3.487 10 O -0.548 6.548 11 N -0.602 5.602 12 C 0.111 3.889 13 C -0.123 4.123 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.124 4.124 24 C 0.103 3.897 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.038 0.962 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 9.295 4.767 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.227 3.773 3 O -0.318 6.318 4 C -0.204 4.204 5 C -0.034 4.034 6 C -0.219 4.219 7 C -0.220 4.220 8 C -0.172 4.172 9 C 0.302 3.698 10 O -0.428 6.428 11 N -0.334 5.334 12 C -0.011 4.011 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.162 4.162 24 C -0.019 4.019 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.122 0.878 46 H 0.085 0.915 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.230 10.248 4.804 18.182 hybrid contribution 0.254 -1.094 -0.783 1.370 sum -13.976 9.153 4.020 17.184 Atomic orbital electron populations 1.22314 0.94907 1.04600 1.04432 1.24546 0.91555 0.90581 0.70572 1.90333 1.71232 1.35405 1.34805 1.22269 0.96326 0.97345 1.04414 1.20064 0.91201 0.94028 0.98066 1.22283 1.04900 1.00206 0.94542 1.22288 1.04928 1.00184 0.94611 1.21780 0.92678 0.98816 1.03937 1.20457 0.88476 0.84751 0.76133 1.90523 1.80092 1.20952 1.51223 1.48351 1.06763 1.06786 1.71532 1.21659 0.79366 1.00760 0.99295 1.21998 0.99133 0.98723 0.96256 1.18629 0.91697 0.89161 0.97494 1.21215 1.29317 0.92671 1.11737 0.92729 1.24955 0.95216 0.97687 0.96115 1.69834 1.38456 1.09021 1.35834 0.86617 0.79354 0.79508 0.82672 1.20717 1.21249 1.19983 1.22020 0.98553 1.01845 0.93812 1.22083 0.98205 0.80385 1.01208 0.88905 0.89939 0.89794 0.88432 0.88503 0.89682 0.91226 0.94430 0.94276 0.91240 0.89650 0.89047 0.89315 0.92431 0.90394 0.93025 0.92249 0.95504 0.92994 0.94283 0.87795 0.91522 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.20 10.25 36.01 0.37 -0.83 16 2 C 0.35 3.30 6.68 -29.03 -0.19 3.10 16 3 O -0.44 -5.82 12.10 6.01 0.07 -5.74 16 4 C -0.17 -1.45 4.69 -27.88 -0.13 -1.58 16 5 C -0.03 -0.41 0.51 -154.51 -0.08 -0.49 16 6 C -0.16 -2.22 7.88 37.16 0.29 -1.92 16 7 C -0.16 -2.32 7.88 37.16 0.29 -2.03 16 8 C -0.13 -1.69 3.12 -27.88 -0.09 -1.78 16 9 C 0.51 8.56 7.11 -10.99 -0.08 8.49 16 10 O -0.55 -10.38 10.76 5.55 0.06 -10.32 16 11 N -0.60 -10.55 2.98 -172.52 -0.51 -11.07 16 12 C 0.11 2.04 6.42 -3.71 -0.02 2.01 16 13 C -0.12 -2.51 5.30 -26.61 -0.14 -2.66 16 14 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 15 C -0.51 -13.51 8.56 -34.44 -0.29 -13.80 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.11 11.31 55.43 0.63 -23.48 16 19 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.12 -2.66 5.16 -26.59 -0.14 -2.79 16 24 C 0.10 1.78 6.35 -3.54 -0.02 1.75 16 25 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.39 5.51 -51.93 -0.29 1.10 16 31 H 0.07 0.99 5.52 -51.93 -0.29 0.70 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.02 5.52 -51.93 -0.29 0.73 16 35 H 0.08 1.45 5.51 -51.93 -0.29 1.16 16 36 H 0.09 1.09 7.70 -51.93 -0.40 0.69 16 37 H 0.09 0.98 7.95 -51.93 -0.41 0.56 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 46 H 0.07 0.95 5.97 -51.93 -0.31 0.64 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -29.77 353.89 -7.94 -37.71 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.98 Total: 1.96 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.52 Total: -10.05 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.11 Total: -34.55 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.13 Total: -16.06 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.77 -7.94 -37.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530416263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.178 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds