Wall clock time and date at job start Tue Mar 31 2020 07:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20752 * 119.99621 * 2 1 4 4 C 1.50700 * 119.99891 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.46708 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47433 * 59.99824 * 5 4 2 7 7 C 1.53000 * 109.46757 * 299.99501 * 5 4 2 8 8 C 1.52997 * 109.46922 * 179.97438 * 5 4 2 9 9 C 1.50700 * 109.47382 * 179.97438 * 8 5 4 10 10 O 1.21283 * 119.99658 * 0.02562 * 9 8 5 11 11 N 1.34773 * 120.00452 * 179.97438 * 9 8 5 12 12 C 1.46926 * 120.63302 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 233.67613 * 12 11 9 14 14 C 1.53035 * 109.31327 * 305.29292 * 13 12 11 15 15 C 1.50709 * 109.45964 * 181.37529 * 14 13 12 16 16 H 1.07997 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99864 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00107 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47199 * 90.00447 * 19 17 15 21 21 H 1.48500 * 109.47216 * 210.00118 * 19 17 15 22 22 H 1.48493 * 109.47310 * 329.99864 * 19 17 15 23 23 C 1.53038 * 109.54175 * 61.36680 * 14 13 12 24 24 C 1.47207 * 120.81153 * 0.14103 * 11 9 8 25 25 H 1.09009 * 109.47006 * 269.99826 * 1 2 3 26 26 H 1.08998 * 109.47804 * 29.99530 * 1 2 3 27 27 H 1.08998 * 109.47445 * 150.00236 * 1 2 3 28 28 H 1.08998 * 109.47509 * 59.99417 * 4 2 1 29 29 H 1.08996 * 109.46681 * 299.99392 * 4 2 1 30 30 H 1.08994 * 109.47133 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.46701 * 299.99947 * 6 5 4 32 32 H 1.09000 * 109.46945 * 59.99623 * 6 5 4 33 33 H 1.09001 * 109.47376 * 299.99774 * 7 5 4 34 34 H 1.09001 * 109.47046 * 60.00841 * 7 5 4 35 35 H 1.09005 * 109.46634 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47350 * 59.99522 * 8 5 4 37 37 H 1.09003 * 109.47457 * 299.99533 * 8 5 4 38 38 H 1.09002 * 109.58861 * 113.81616 * 12 11 9 39 39 H 1.08996 * 109.58519 * 353.53507 * 12 11 9 40 40 H 1.09003 * 109.49975 * 65.24379 * 13 12 11 41 41 H 1.09000 * 109.49553 * 185.30642 * 13 12 11 42 42 H 1.09004 * 109.45942 * 301.34050 * 14 13 12 43 43 H 0.97004 * 120.00396 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.49557 * 58.58503 * 23 14 13 45 45 H 1.08996 * 109.50003 * 178.68400 * 23 14 13 46 46 H 1.08996 * 109.53610 * 6.53712 * 24 11 9 47 47 H 1.09002 * 109.68003 * 246.23180 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.1349 -0.2234 1.2481 7 6 4.1338 -0.2230 -1.2504 8 6 4.5297 -2.3504 -0.0011 9 6 6.0114 -2.0751 -0.0022 10 8 6.4156 -0.9316 -0.0025 11 7 6.8872 -3.0994 -0.0018 12 6 8.3346 -2.8469 -0.0024 13 6 8.9705 -3.6081 -1.1699 14 6 8.5938 -5.0882 -1.0741 15 6 9.2453 -5.8461 -2.2021 16 1 9.8655 -5.3243 -2.9159 17 6 9.0497 -7.2055 -2.3227 18 7 8.2948 -7.8410 -1.4532 19 14 9.8566 -8.1448 -3.7213 20 1 11.1927 -8.6267 -3.2879 21 1 9.0082 -9.3057 -4.0923 22 1 10.0104 -7.2489 -4.8954 23 6 7.0737 -5.2369 -1.1714 24 6 6.4163 -4.4942 -0.0034 25 1 -0.3633 0.0000 1.0278 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 1.9971 -1.8764 -0.8907 29 1 1.9972 -1.8770 0.8892 30 1 5.2064 -0.0238 1.2475 31 1 3.5898 0.7206 1.2485 32 1 3.8719 -0.7951 2.1381 33 1 3.8702 -0.7944 -2.1404 34 1 3.5888 0.7210 -1.2500 35 1 5.2055 -0.0241 -1.2510 36 1 4.2661 -2.9223 -0.8908 37 1 4.2668 -2.9218 0.8892 38 1 8.7662 -3.1920 0.9372 39 1 8.5191 -1.7789 -0.1187 40 1 8.6053 -3.1999 -2.1123 41 1 10.0546 -3.5043 -1.1243 42 1 8.9377 -5.4895 -0.1208 43 1 8.1574 -8.7975 -1.5378 44 1 6.7264 -4.8134 -2.1138 45 1 6.8079 -6.2930 -1.1266 46 1 5.3330 -4.5129 -0.1218 47 1 6.6896 -4.9750 0.9359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530416263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:22 Heat of formation + Delta-G solvation = -104.768845 kcal Electronic energy + Delta-G solvation = -24956.694622 eV Core-core repulsion = 21524.372586 eV Total energy + Delta-G solvation = -3432.322036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59583 -40.54418 -38.64104 -36.68153 -35.29180 -33.15679 -31.89736 -31.63784 -29.43703 -28.10203 -28.04125 -27.64414 -24.66293 -23.88648 -21.98140 -20.93499 -19.86288 -19.34073 -18.55735 -17.86307 -16.96063 -16.61635 -16.49483 -16.32915 -16.27182 -15.71395 -15.13599 -14.97261 -14.88105 -14.58462 -14.40352 -14.17604 -14.06618 -13.55254 -13.27290 -13.22219 -13.06435 -12.87404 -12.83595 -12.79477 -12.45738 -12.19319 -12.12292 -12.08770 -12.05911 -11.89267 -11.88236 -11.51733 -11.43678 -10.98672 -10.84529 -10.49945 -10.36627 -10.03465 -9.44267 -8.07337 -6.20224 1.16170 1.41262 1.43691 1.52344 1.75218 2.17043 2.44520 3.19043 3.24832 3.60588 3.95404 3.97498 4.05061 4.18394 4.29783 4.33830 4.43870 4.51168 4.52640 4.58992 4.60658 4.69673 4.75046 4.78952 4.84560 4.84684 4.89100 4.91763 5.00844 5.03889 5.17485 5.17980 5.20333 5.23894 5.28119 5.44079 5.48294 5.58744 5.59249 5.63495 5.73235 6.00364 6.16364 6.40749 6.63327 6.79089 6.88676 7.33991 7.47240 8.95938 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.003231 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.957142 B = 8665.283080 C = 9125.346212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.350 3.650 3 O -0.492 6.492 4 C -0.163 4.163 5 C -0.033 4.033 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.127 4.127 9 C 0.506 3.494 10 O -0.574 6.574 11 N -0.608 5.608 12 C 0.118 3.882 13 C -0.113 4.113 14 C 0.046 3.954 15 C -0.536 4.536 16 H 0.044 0.956 17 C 0.020 3.980 18 N -0.909 5.909 19 Si 0.947 3.053 20 H -0.279 1.279 21 H -0.280 1.280 22 H -0.275 1.275 23 C -0.115 4.115 24 C 0.114 3.886 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.002 0.998 43 H 0.262 0.738 44 H 0.028 0.972 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 8.247 5.092 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.229 3.771 3 O -0.370 6.370 4 C -0.200 4.200 5 C -0.033 4.033 6 C -0.214 4.214 7 C -0.216 4.216 8 C -0.167 4.167 9 C 0.297 3.703 10 O -0.455 6.455 11 N -0.340 5.340 12 C -0.005 4.005 13 C -0.151 4.151 14 C 0.027 3.973 15 C -0.574 4.574 16 H 0.062 0.938 17 C -0.179 4.179 18 N -0.549 5.549 19 Si 0.773 3.227 20 H -0.205 1.205 21 H -0.205 1.205 22 H -0.200 1.200 23 C -0.154 4.154 24 C -0.007 4.007 25 H 0.127 0.873 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.020 0.980 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.099 0.901 46 H 0.124 0.876 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.703 9.193 5.131 19.744 hybrid contribution 1.063 -0.729 -0.893 1.569 sum -15.640 8.464 4.238 18.281 Atomic orbital electron populations 1.22311 0.92001 1.05615 1.05722 1.25122 0.93241 0.90075 0.68649 1.90340 1.72399 1.36924 1.37293 1.22320 0.92983 0.97684 1.07043 1.20052 0.94007 0.93204 0.96042 1.22186 1.02500 1.00515 0.96219 1.22206 1.02443 1.00576 0.96402 1.21871 0.89200 0.99515 1.06094 1.21264 0.90094 0.83972 0.74981 1.90545 1.80887 1.22083 1.51976 1.48421 1.06380 1.07231 1.72009 1.21487 0.80435 1.00130 0.98488 1.21840 0.99355 0.97179 0.96730 1.18601 0.93151 0.90337 0.95181 1.21536 1.29826 0.93493 1.12554 0.93808 1.25594 0.95757 0.98422 0.98173 1.69934 1.38938 1.09218 1.36803 0.85731 0.78552 0.78319 0.80067 1.20463 1.20547 1.19996 1.21786 0.97256 1.01028 0.95300 1.21973 1.00005 0.79541 0.99230 0.87298 0.90498 0.87227 0.85983 0.85463 0.92941 0.92214 0.92628 0.93300 0.92100 0.93057 0.87297 0.86337 0.91634 0.90610 0.94254 0.92289 0.97952 0.92859 0.95348 0.90088 0.87612 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 10.25 71.24 0.73 -0.93 16 2 C 0.35 5.67 6.68 29.10 0.19 5.87 16 3 O -0.49 -12.61 12.10 -1.43 -0.02 -12.63 16 4 C -0.16 -2.19 4.69 29.85 0.14 -2.05 16 5 C -0.03 -0.73 0.51 -52.18 -0.03 -0.76 16 6 C -0.16 -4.13 7.88 71.98 0.57 -3.56 16 7 C -0.16 -4.46 7.88 71.98 0.57 -3.89 16 8 C -0.13 -2.82 3.12 29.85 0.09 -2.72 16 9 C 0.51 16.18 7.11 87.66 0.62 16.81 16 10 O -0.57 -21.87 10.76 -3.04 -0.03 -21.91 16 11 N -0.61 -20.53 2.98 -818.12 -2.44 -22.97 16 12 C 0.12 4.28 6.42 86.36 0.55 4.84 16 13 C -0.11 -4.69 5.30 30.67 0.16 -4.53 16 14 C 0.05 2.18 2.06 -11.51 -0.02 2.16 16 15 C -0.54 -28.81 8.56 25.60 0.22 -28.59 16 16 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 17 C 0.02 1.05 5.30 84.65 0.45 1.50 16 18 N -0.91 -49.23 11.31 21.45 0.24 -48.99 16 19 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 C -0.12 -4.90 5.16 30.68 0.16 -4.74 16 24 C 0.11 3.69 6.35 86.32 0.55 4.24 16 25 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.11 0.37 8.12 -2.39 -0.02 0.35 16 28 H 0.12 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.72 5.51 -2.39 -0.01 1.71 16 31 H 0.06 1.69 5.52 -2.39 -0.01 1.68 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.81 5.52 -2.39 -0.01 1.79 16 35 H 0.05 1.78 5.51 -2.38 -0.01 1.77 16 36 H 0.11 2.10 7.70 -2.39 -0.02 2.08 16 37 H 0.12 1.98 7.95 -2.39 -0.02 1.96 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 2.80 7.00 -2.39 -0.02 2.78 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.26 13.51 8.31 -92.70 -0.77 12.74 16 44 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 3.86 6.03 -2.39 -0.01 3.84 16 46 H 0.11 2.60 5.97 -2.39 -0.01 2.58 16 47 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -67.53 353.89 5.67 -61.85 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.94 Total: 16.55 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.96 Total: -16.37 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -2.20 Total: -71.96 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.05 Total: -34.54 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -67.53 5.67 -61.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530416263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.915 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds