Wall clock time and date at job start Tue Mar 31 2020 07:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47386 * 2 1 4 4 O 1.42903 * 109.47006 * 119.99493 * 2 1 3 5 5 C 1.42903 * 114.00165 * 269.99919 * 4 2 1 6 6 C 1.54243 * 108.89710 * 272.88731 * 5 4 2 7 7 C 1.50470 * 108.52458 * 159.26261 * 6 5 4 8 8 C 1.54067 * 112.50146 * 94.15014 * 7 6 5 9 9 C 1.54071 * 112.81421 * 318.28334 * 8 7 6 10 10 C 1.50473 * 112.49261 * 318.28157 * 9 8 7 11 11 C 1.45538 * 108.89711 * 149.99733 * 5 4 2 12 12 C 1.50690 * 109.47464 * 239.99618 * 2 1 3 13 13 O 1.21291 * 120.00183 * 250.53748 * 12 2 1 14 14 N 1.34775 * 120.00004 * 70.53255 * 12 2 1 15 15 C 1.37098 * 120.00233 * 174.52591 * 14 12 2 16 16 H 1.08003 * 119.99555 * 328.59818 * 15 14 12 17 17 C 1.38946 * 120.00533 * 148.60048 * 15 14 12 18 18 N 1.31421 * 119.99806 * 0.34227 * 17 15 14 19 19 Si 1.86803 * 120.00468 * 180.33910 * 17 15 14 20 20 H 1.48490 * 109.47234 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.46971 * 300.00277 * 19 17 15 22 22 H 1.48504 * 109.46760 * 60.00053 * 19 17 15 23 23 C 1.46496 * 120.00137 * 354.51877 * 14 12 2 24 24 C 1.53002 * 117.49961 * 133.69117 * 23 14 12 25 25 C 1.52998 * 60.00282 * 252.51759 * 24 23 14 26 26 H 1.09005 * 109.46800 * 304.83186 * 1 2 3 27 27 H 1.09002 * 109.46987 * 64.82356 * 1 2 3 28 28 H 1.08997 * 109.46886 * 184.83040 * 1 2 3 29 29 H 1.09004 * 108.86866 * 31.39473 * 5 4 2 30 30 H 1.09000 * 109.62701 * 278.97130 * 6 5 4 31 31 H 1.09000 * 109.62944 * 39.55403 * 6 5 4 32 32 H 1.08998 * 108.87825 * 333.37217 * 7 6 5 33 33 H 1.08999 * 108.87745 * 214.92548 * 7 6 5 34 34 H 1.09001 * 108.81578 * 197.42371 * 8 7 6 35 35 H 1.09003 * 108.73117 * 79.08017 * 8 7 6 36 36 H 1.08998 * 108.87785 * 197.50698 * 9 8 7 37 37 H 1.09000 * 108.79998 * 79.00575 * 9 8 7 38 38 H 1.08997 * 109.63059 * 334.44459 * 10 9 8 39 39 H 1.09005 * 109.62888 * 213.86174 * 10 9 8 40 40 H 1.09000 * 108.89453 * 303.44549 * 11 5 4 41 41 H 1.09001 * 108.89190 * 62.03445 * 11 5 4 42 42 H 0.96999 * 119.99610 * 175.01149 * 18 17 15 43 43 H 1.08998 * 115.55576 * 279.39937 * 23 14 12 44 44 H 1.09001 * 117.49903 * 0.02562 * 24 23 14 45 45 H 1.09004 * 117.50356 * 145.02572 * 24 23 14 46 46 H 1.09007 * 117.49673 * 252.51314 * 25 24 23 47 47 H 1.09001 * 117.52297 * 107.47949 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1831 2.2941 6 6 3.6195 0.7829 2.2276 7 6 3.6528 2.0274 3.0727 8 6 4.1455 1.7534 4.5066 9 6 3.5621 0.4574 5.1013 10 6 2.1020 0.2837 4.7819 11 6 1.9779 -0.5826 3.5117 12 6 2.0324 -0.7104 -1.2303 13 8 2.5645 -1.7957 -1.1292 14 7 1.8903 -0.1400 -2.4431 15 6 2.4456 -0.7315 -3.5482 16 1 3.3588 -1.3007 -3.4546 17 6 1.8338 -0.5989 -4.7887 18 7 0.7264 0.0993 -4.9038 19 14 2.5854 -1.4128 -6.2927 20 1 1.7478 -1.1214 -7.4837 21 1 3.9554 -0.8825 -6.5099 22 1 2.6508 -2.8811 -6.0802 23 6 1.1424 1.1121 -2.5806 24 6 1.7704 2.2209 -3.4274 25 6 1.7194 2.3575 -1.9044 26 1 -0.3633 0.5870 0.8436 27 1 -0.3633 0.4372 -0.9301 28 1 -0.3633 -1.0240 0.0865 29 1 1.4732 0.9942 2.2496 30 1 4.3405 0.0608 2.6107 31 1 3.8626 1.0349 1.1953 32 1 2.6487 2.4489 3.1194 33 1 4.3168 2.7541 2.6046 34 1 3.8602 2.5915 5.1425 35 1 5.2327 1.6763 4.4943 36 1 3.6861 0.4791 6.1840 37 1 4.1143 -0.3927 4.7005 38 1 1.6471 1.2585 4.6061 39 1 1.6017 -0.2124 5.6136 40 1 0.9793 -1.0181 3.4776 41 1 2.7119 -1.3869 3.5617 42 1 0.3387 0.2527 -5.7796 43 1 0.0574 1.0112 -2.6077 44 1 2.7399 2.0185 -3.8826 45 1 1.0987 2.8496 -4.0119 46 1 1.0139 3.0760 -1.4869 47 1 2.6552 2.2450 -1.3569 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531853621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:56 Heat of formation + Delta-G solvation = -61.477419 kcal Electronic energy + Delta-G solvation = -25637.103673 eV Core-core repulsion = 22206.658894 eV Total energy + Delta-G solvation = -3430.444779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.71504 -38.68300 -36.60709 -35.75794 -32.99136 -32.28395 -31.80510 -31.04166 -29.78811 -25.37616 -24.91676 -24.27619 -23.11098 -21.46603 -21.18818 -20.57795 -19.32539 -18.99754 -16.99816 -16.61829 -15.95714 -15.53790 -15.06762 -14.85073 -14.76041 -14.29256 -14.03999 -13.81749 -13.46252 -13.14648 -13.03291 -12.87754 -12.36036 -12.25790 -12.13301 -11.96482 -11.66150 -11.24180 -11.16953 -11.09961 -10.93939 -10.83780 -10.66115 -10.61837 -10.44747 -10.40465 -10.34127 -10.31223 -10.24209 -9.70449 -9.37938 -9.10399 -8.77271 -8.14646 -7.61099 -6.22410 -3.90534 3.22280 3.27437 3.31429 3.77251 3.92272 4.22681 4.59055 4.71629 4.74792 4.79686 4.96570 5.07138 5.12404 5.18372 5.23209 5.31539 5.34073 5.49413 5.54622 5.63831 5.68391 5.75836 5.79161 5.81315 5.84642 5.98554 6.03207 6.07957 6.11141 6.12715 6.15093 6.18878 6.23160 6.25091 6.32421 6.35964 6.43595 6.48357 6.65265 6.79519 6.94979 7.18344 7.59288 7.65996 8.21855 8.56973 9.24304 9.43377 10.03192 10.80271 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.004016 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.452574 B = 6970.584425 C = 7180.935315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.077 3.923 3 H 0.077 0.923 4 O -0.356 6.356 5 C 0.094 3.906 6 C -0.140 4.140 7 C -0.117 4.117 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.110 4.110 11 C -0.120 4.120 12 C 0.464 3.536 13 O -0.563 6.563 14 N -0.424 5.424 15 C -0.307 4.307 16 H 0.091 0.909 17 C 0.041 3.959 18 N -0.874 5.874 19 Si 0.922 3.078 20 H -0.285 1.285 21 H -0.275 1.275 22 H -0.273 1.273 23 C 0.132 3.868 24 C -0.130 4.130 25 C -0.234 4.234 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.266 0.734 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 7.753 14.605 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 H 0.095 0.905 4 O -0.274 6.274 5 C 0.036 3.964 6 C -0.178 4.178 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.148 4.148 11 C -0.158 4.158 12 C 0.252 3.748 13 O -0.445 6.445 14 N -0.145 5.145 15 C -0.434 4.434 16 H 0.109 0.891 17 C -0.164 4.164 18 N -0.512 5.512 19 Si 0.749 3.251 20 H -0.210 1.210 21 H -0.201 1.201 22 H -0.198 1.198 23 C 0.026 3.974 24 C -0.168 4.168 25 C -0.272 4.272 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.620 6.992 14.495 16.105 hybrid contribution 0.207 0.098 -0.978 1.004 sum 0.827 7.089 13.517 15.286 Atomic orbital electron populations 1.22242 0.94989 1.02837 1.02523 1.21994 0.94288 0.96147 0.86015 0.90545 1.88104 1.86321 1.34056 1.18938 1.20977 0.95355 0.92879 0.87174 1.21872 0.98088 0.97445 1.00412 1.21287 1.01489 0.97774 0.94942 1.21915 1.00172 0.97387 0.95870 1.21382 0.96249 0.98316 0.99966 1.21234 0.96631 1.00091 0.96836 1.20519 1.03096 0.99117 0.93045 1.19900 0.84421 0.86470 0.84040 1.90538 1.46981 1.21158 1.85797 1.42963 1.47733 1.18354 1.05455 1.19439 1.07179 1.31607 0.85191 0.89097 1.25323 0.94886 0.96794 0.99349 1.69869 1.18425 1.38515 1.24385 0.86075 0.78609 0.80149 0.80302 1.20995 1.20079 1.19814 1.21157 0.94648 0.79990 1.01556 1.22633 1.02422 1.01173 0.90553 1.23621 1.02873 1.03052 0.97693 0.92842 0.90328 0.91826 0.93032 0.91029 0.91366 0.92176 0.92171 0.92499 0.92387 0.92500 0.91780 0.91618 0.91613 0.91450 0.91087 0.92345 0.87672 0.89209 0.89762 0.89569 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.36 37.16 0.35 -2.59 16 2 C 0.08 1.52 1.99 -27.89 -0.06 1.47 16 3 H 0.08 1.38 4.88 -51.93 -0.25 1.13 16 4 O -0.36 -6.99 9.10 -54.92 -0.50 -7.49 16 5 C 0.09 1.37 1.92 -29.60 -0.06 1.31 16 6 C -0.14 -1.92 5.16 -27.34 -0.14 -2.06 16 7 C -0.12 -1.25 5.31 -27.44 -0.15 -1.40 16 8 C -0.12 -1.07 5.85 -25.61 -0.15 -1.22 16 9 C -0.12 -1.13 5.32 -27.43 -0.15 -1.27 16 10 C -0.11 -1.06 5.61 -27.34 -0.15 -1.22 16 11 C -0.12 -1.51 4.82 -29.60 -0.14 -1.65 16 12 C 0.46 11.83 6.95 -10.99 -0.08 11.75 16 13 O -0.56 -16.71 16.37 -14.14 -0.23 -16.94 16 14 N -0.42 -10.82 2.92 -107.73 -0.31 -11.14 16 15 C -0.31 -8.53 8.64 -14.93 -0.13 -8.66 16 16 H 0.09 2.66 7.62 -52.48 -0.40 2.26 16 17 C 0.04 1.07 5.06 -17.46 -0.09 0.98 16 18 N -0.87 -22.65 10.40 55.50 0.58 -22.08 16 19 Si 0.92 20.92 29.56 -169.99 -5.02 15.89 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.13 2.86 2.41 -67.93 -0.16 2.70 16 24 C -0.13 -2.63 8.48 -26.73 -0.23 -2.86 16 25 C -0.23 -4.14 8.59 -26.73 -0.23 -4.36 16 26 H 0.05 0.76 7.95 -51.93 -0.41 0.35 16 27 H 0.08 1.39 5.32 -51.93 -0.28 1.12 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.69 6.91 -51.93 -0.36 0.34 16 30 H 0.07 0.99 6.97 -51.93 -0.36 0.63 16 31 H 0.07 1.06 7.67 -51.93 -0.40 0.66 16 32 H 0.06 0.61 6.63 -51.93 -0.34 0.27 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.65 6.62 -51.93 -0.34 0.31 16 38 H 0.07 0.61 6.98 -51.93 -0.36 0.25 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.95 7.46 -51.93 -0.39 0.56 16 42 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 43 H 0.11 2.34 6.74 -51.93 -0.35 1.99 16 44 H 0.09 1.97 7.95 -51.93 -0.41 1.56 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 47 H 0.08 1.47 7.39 -51.93 -0.38 1.09 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -30.89 353.82 -9.70 -40.59 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.99 Total: 4.91 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.56 Total: -9.08 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.26 Total: -33.21 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.73 Total: -24.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.89 -9.70 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531853621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.886 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds