Wall clock time and date at job start Tue Mar 31 2020 07:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47386 * 2 1 4 4 O 1.42903 * 109.47006 * 119.99493 * 2 1 3 5 5 C 1.42903 * 114.00165 * 269.99919 * 4 2 1 6 6 C 1.54243 * 108.89710 * 272.88731 * 5 4 2 7 7 C 1.50470 * 108.52458 * 159.26261 * 6 5 4 8 8 C 1.54067 * 112.50146 * 94.15014 * 7 6 5 9 9 C 1.54071 * 112.81421 * 318.28334 * 8 7 6 10 10 C 1.50473 * 112.49261 * 318.28157 * 9 8 7 11 11 C 1.45538 * 108.89711 * 149.99733 * 5 4 2 12 12 C 1.50690 * 109.47464 * 239.99618 * 2 1 3 13 13 O 1.21291 * 120.00183 * 250.53748 * 12 2 1 14 14 N 1.34775 * 120.00004 * 70.53255 * 12 2 1 15 15 C 1.37098 * 120.00233 * 174.52591 * 14 12 2 16 16 H 1.08003 * 119.99555 * 328.59818 * 15 14 12 17 17 C 1.38946 * 120.00533 * 148.60048 * 15 14 12 18 18 N 1.31421 * 119.99806 * 0.34227 * 17 15 14 19 19 Si 1.86803 * 120.00468 * 180.33910 * 17 15 14 20 20 H 1.48490 * 109.47234 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.46971 * 300.00277 * 19 17 15 22 22 H 1.48504 * 109.46760 * 60.00053 * 19 17 15 23 23 C 1.46496 * 120.00137 * 354.51877 * 14 12 2 24 24 C 1.53002 * 117.49961 * 133.69117 * 23 14 12 25 25 C 1.52998 * 60.00282 * 252.51759 * 24 23 14 26 26 H 1.09005 * 109.46800 * 304.83186 * 1 2 3 27 27 H 1.09002 * 109.46987 * 64.82356 * 1 2 3 28 28 H 1.08997 * 109.46886 * 184.83040 * 1 2 3 29 29 H 1.09004 * 108.86866 * 31.39473 * 5 4 2 30 30 H 1.09000 * 109.62701 * 278.97130 * 6 5 4 31 31 H 1.09000 * 109.62944 * 39.55403 * 6 5 4 32 32 H 1.08998 * 108.87825 * 333.37217 * 7 6 5 33 33 H 1.08999 * 108.87745 * 214.92548 * 7 6 5 34 34 H 1.09001 * 108.81578 * 197.42371 * 8 7 6 35 35 H 1.09003 * 108.73117 * 79.08017 * 8 7 6 36 36 H 1.08998 * 108.87785 * 197.50698 * 9 8 7 37 37 H 1.09000 * 108.79998 * 79.00575 * 9 8 7 38 38 H 1.08997 * 109.63059 * 334.44459 * 10 9 8 39 39 H 1.09005 * 109.62888 * 213.86174 * 10 9 8 40 40 H 1.09000 * 108.89453 * 303.44549 * 11 5 4 41 41 H 1.09001 * 108.89190 * 62.03445 * 11 5 4 42 42 H 0.96999 * 119.99610 * 175.01149 * 18 17 15 43 43 H 1.08998 * 115.55576 * 279.39937 * 23 14 12 44 44 H 1.09001 * 117.49903 * 0.02562 * 24 23 14 45 45 H 1.09004 * 117.50356 * 145.02572 * 24 23 14 46 46 H 1.09007 * 117.49673 * 252.51314 * 25 24 23 47 47 H 1.09001 * 117.52297 * 107.47949 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1831 2.2941 6 6 3.6195 0.7829 2.2276 7 6 3.6528 2.0274 3.0727 8 6 4.1455 1.7534 4.5066 9 6 3.5621 0.4574 5.1013 10 6 2.1020 0.2837 4.7819 11 6 1.9779 -0.5826 3.5117 12 6 2.0324 -0.7104 -1.2303 13 8 2.5645 -1.7957 -1.1292 14 7 1.8903 -0.1400 -2.4431 15 6 2.4456 -0.7315 -3.5482 16 1 3.3588 -1.3007 -3.4546 17 6 1.8338 -0.5989 -4.7887 18 7 0.7264 0.0993 -4.9038 19 14 2.5854 -1.4128 -6.2927 20 1 1.7478 -1.1214 -7.4837 21 1 3.9554 -0.8825 -6.5099 22 1 2.6508 -2.8811 -6.0802 23 6 1.1424 1.1121 -2.5806 24 6 1.7704 2.2209 -3.4274 25 6 1.7194 2.3575 -1.9044 26 1 -0.3633 0.5870 0.8436 27 1 -0.3633 0.4372 -0.9301 28 1 -0.3633 -1.0240 0.0865 29 1 1.4732 0.9942 2.2496 30 1 4.3405 0.0608 2.6107 31 1 3.8626 1.0349 1.1953 32 1 2.6487 2.4489 3.1194 33 1 4.3168 2.7541 2.6046 34 1 3.8602 2.5915 5.1425 35 1 5.2327 1.6763 4.4943 36 1 3.6861 0.4791 6.1840 37 1 4.1143 -0.3927 4.7005 38 1 1.6471 1.2585 4.6061 39 1 1.6017 -0.2124 5.6136 40 1 0.9793 -1.0181 3.4776 41 1 2.7119 -1.3869 3.5617 42 1 0.3387 0.2527 -5.7796 43 1 0.0574 1.0112 -2.6077 44 1 2.7399 2.0185 -3.8826 45 1 1.0987 2.8496 -4.0119 46 1 1.0139 3.0760 -1.4869 47 1 2.6552 2.2450 -1.3569 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531853621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:55 Heat of formation + Delta-G solvation = -78.075273 kcal Electronic energy + Delta-G solvation = -25637.823410 eV Core-core repulsion = 22206.658894 eV Total energy + Delta-G solvation = -3431.164516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16956 -40.14330 -38.07336 -37.41306 -34.89905 -33.43367 -33.09132 -32.63715 -31.15701 -27.26916 -25.99196 -25.28984 -24.57706 -23.00481 -22.89815 -21.66141 -20.80332 -20.11100 -18.82665 -18.08461 -17.56170 -17.01074 -16.70603 -16.30595 -15.92835 -15.74794 -15.45429 -15.22507 -15.03971 -14.45963 -14.26410 -13.92255 -13.77737 -13.69629 -13.40945 -13.22388 -13.03721 -12.94199 -12.78454 -12.60092 -12.42506 -12.20788 -12.14577 -12.08902 -11.93463 -11.55243 -11.39329 -11.33503 -11.22434 -11.14641 -11.06397 -10.61650 -10.47406 -10.05906 -9.61020 -8.24254 -6.01243 1.36831 1.40271 1.47855 1.99929 2.18235 2.52647 3.02195 3.18583 3.25688 3.65696 3.86186 3.88091 4.04401 4.07010 4.19279 4.23133 4.25031 4.27627 4.34066 4.39044 4.41379 4.45698 4.55178 4.60709 4.72186 4.81795 4.85598 4.93091 4.99150 5.00260 5.14048 5.16060 5.23632 5.24196 5.29748 5.33653 5.36983 5.38861 5.40753 5.44496 5.48001 5.51064 5.59833 6.10098 6.34420 6.61836 7.20953 7.46049 8.05417 8.74767 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.004016 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.452574 B = 6970.584425 C = 7180.935315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.092 3.908 3 H 0.097 0.903 4 O -0.389 6.389 5 C 0.089 3.911 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.123 4.123 10 C -0.101 4.101 11 C -0.120 4.120 12 C 0.442 3.558 13 O -0.625 6.625 14 N -0.429 5.429 15 C -0.347 4.347 16 H 0.058 0.942 17 C 0.016 3.984 18 N -0.875 5.875 19 Si 0.977 3.023 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.285 1.285 23 C 0.104 3.896 24 C -0.136 4.136 25 C -0.190 4.190 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.273 0.727 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 10.542 15.994 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.114 0.886 4 O -0.309 6.309 5 C 0.032 3.968 6 C -0.176 4.176 7 C -0.151 4.151 8 C -0.151 4.151 9 C -0.161 4.161 10 C -0.138 4.138 11 C -0.158 4.158 12 C 0.232 3.768 13 O -0.512 6.512 14 N -0.149 5.149 15 C -0.475 4.475 16 H 0.076 0.924 17 C -0.189 4.189 18 N -0.512 5.512 19 Si 0.801 3.199 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.211 1.211 23 C 0.000 4.000 24 C -0.173 4.173 25 C -0.228 4.228 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.118 0.882 46 H 0.149 0.851 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.604 9.838 15.882 18.692 hybrid contribution 0.588 -0.804 -1.428 1.741 sum -0.016 9.034 14.454 17.045 Atomic orbital electron populations 1.22203 0.92905 1.02527 1.04194 1.21788 0.95525 0.95725 0.83798 0.88559 1.88086 1.86616 1.36192 1.19962 1.21315 0.96228 0.93149 0.86075 1.21831 0.97362 0.98770 0.99593 1.21259 1.02526 0.95987 0.95330 1.21912 1.00165 0.98005 0.95064 1.21395 0.95828 0.97778 1.01064 1.21213 0.97103 1.00120 0.95406 1.20562 1.02304 0.99129 0.93794 1.21051 0.83657 0.86260 0.85837 1.90475 1.49751 1.23972 1.86955 1.43162 1.47088 1.19589 1.05028 1.19346 1.07419 1.33589 0.87098 0.92386 1.25901 0.95283 0.96753 1.00927 1.69928 1.18245 1.37753 1.25251 0.85262 0.78564 0.78354 0.77733 1.19022 1.19406 1.21069 1.21210 0.94125 0.79511 1.05145 1.22590 1.01286 1.00859 0.92578 1.23666 1.03056 1.00264 0.95786 0.88619 0.90527 0.93669 0.90950 0.92233 0.93835 0.90884 0.91673 0.90501 0.92465 0.90663 0.93462 0.90332 0.90027 0.91703 0.92936 0.91740 0.88085 0.91758 0.88239 0.85088 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 9.36 71.98 0.67 -4.73 16 2 C 0.09 3.67 1.99 29.85 0.06 3.73 16 3 H 0.10 3.34 4.88 -2.39 -0.01 3.33 16 4 O -0.39 -15.54 9.10 -130.16 -1.18 -16.72 16 5 C 0.09 2.50 1.92 28.74 0.06 2.56 16 6 C -0.14 -3.70 5.16 30.20 0.16 -3.54 16 7 C -0.11 -2.14 5.31 30.14 0.16 -1.98 16 8 C -0.11 -1.78 5.85 31.32 0.18 -1.59 16 9 C -0.12 -1.99 5.32 30.14 0.16 -1.83 16 10 C -0.10 -1.66 5.61 30.20 0.17 -1.49 16 11 C -0.12 -2.90 4.82 28.74 0.14 -2.77 16 12 C 0.44 23.53 6.95 87.65 0.61 24.14 16 13 O -0.63 -39.65 16.37 15.76 0.26 -39.39 16 14 N -0.43 -22.64 2.92 -613.14 -1.79 -24.43 16 15 C -0.35 -20.21 8.64 84.04 0.73 -19.48 16 16 H 0.06 3.67 7.62 -2.91 -0.02 3.65 16 17 C 0.02 0.83 5.06 84.92 0.43 1.26 16 18 N -0.88 -45.17 10.40 21.66 0.23 -44.95 16 19 Si 0.98 43.45 29.56 68.60 2.03 45.47 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 23 C 0.10 4.47 2.41 45.00 0.11 4.58 16 24 C -0.14 -5.32 8.48 30.59 0.26 -5.06 16 25 C -0.19 -6.20 8.59 30.60 0.26 -5.93 16 26 H 0.10 2.38 7.95 -2.38 -0.02 2.36 16 27 H 0.08 2.60 5.32 -2.39 -0.01 2.59 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.72 6.91 -2.38 -0.02 1.70 16 30 H 0.06 1.70 6.97 -2.39 -0.02 1.68 16 31 H 0.04 1.36 7.67 -2.39 -0.02 1.34 16 32 H 0.07 1.20 6.63 -2.39 -0.02 1.19 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.92 6.62 -2.39 -0.02 0.91 16 38 H 0.08 1.13 6.98 -2.39 -0.02 1.11 16 39 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.44 7.46 -2.39 -0.02 1.42 16 42 H 0.27 13.24 8.32 -92.71 -0.77 12.47 16 43 H 0.10 4.40 6.74 -2.39 -0.02 4.39 16 44 H 0.06 2.85 7.95 -2.39 -0.02 2.83 16 45 H 0.10 3.55 8.14 -2.39 -0.02 3.54 16 46 H 0.13 3.18 8.14 -2.38 -0.02 3.16 16 47 H 0.08 2.72 7.39 -2.39 -0.02 2.70 16 Total: -1.00 -71.90 353.82 4.63 -67.27 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.94 Total: 24.89 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.15 Total: -12.14 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.56 Total: -69.38 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.93 Total: -56.11 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.90 4.63 -67.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531853621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.808 kcal (2) G-P(sol) polarization free energy of solvation -71.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds