Wall clock time and date at job start Tue Mar 31 2020 07:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09010 * 109.46611 * 2 1 4 4 O 1.42899 * 109.47012 * 240.00590 * 2 1 3 5 5 C 1.42899 * 113.99834 * 91.64726 * 4 2 1 6 6 C 1.45539 * 108.89768 * 88.21955 * 5 4 2 7 7 C 1.54249 * 112.32887 * 182.63826 * 6 5 4 8 8 C 1.50552 * 108.48076 * 279.88035 * 7 6 5 9 9 C 1.54071 * 112.41278 * 94.26796 * 8 7 6 10 10 C 1.54068 * 112.81577 * 318.27483 * 9 8 7 11 11 C 1.50469 * 112.49396 * 318.28695 * 10 9 8 12 12 C 1.50692 * 109.47430 * 120.00016 * 2 1 3 13 13 O 1.21292 * 120.00335 * 120.00152 * 12 2 1 14 14 N 1.34782 * 120.00168 * 300.00740 * 12 2 1 15 15 C 1.37099 * 119.99627 * 179.97438 * 14 12 2 16 16 H 1.07999 * 119.99545 * 222.75580 * 15 14 12 17 17 C 1.38947 * 120.00510 * 42.75913 * 15 14 12 18 18 N 1.31417 * 119.99918 * 19.51185 * 17 15 14 19 19 Si 1.86799 * 120.00289 * 199.51031 * 17 15 14 20 20 H 1.48508 * 109.46690 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47033 * 119.99773 * 19 17 15 22 22 H 1.48492 * 109.47570 * 240.00211 * 19 17 15 23 23 C 1.46491 * 120.00052 * 359.97438 * 14 12 2 24 24 C 1.52996 * 117.50133 * 187.27168 * 23 14 12 25 25 C 1.52996 * 60.00363 * 252.51088 * 24 23 14 26 26 H 1.08997 * 109.47294 * 306.78009 * 1 2 3 27 27 H 1.08996 * 109.47188 * 66.78630 * 1 2 3 28 28 H 1.09001 * 109.46622 * 186.78230 * 1 2 3 29 29 H 1.08996 * 108.87658 * 329.60839 * 5 4 2 30 30 H 1.09001 * 108.89380 * 303.34022 * 6 5 4 31 31 H 1.09003 * 108.90057 * 61.93248 * 6 5 4 32 32 H 1.08994 * 109.62633 * 39.67630 * 7 6 5 33 33 H 1.09002 * 109.62871 * 160.25580 * 7 6 5 34 34 H 1.08996 * 108.92892 * 333.51217 * 8 7 6 35 35 H 1.09006 * 108.83544 * 214.96151 * 8 7 6 36 36 H 1.09001 * 108.81143 * 197.41202 * 9 8 7 37 37 H 1.08997 * 108.81472 * 79.14182 * 9 8 7 38 38 H 1.08997 * 108.87313 * 197.50996 * 10 9 8 39 39 H 1.08999 * 108.87378 * 79.06568 * 10 9 8 40 40 H 1.08998 * 109.63381 * 334.44342 * 11 10 9 41 41 H 1.09004 * 109.79079 * 213.95639 * 11 10 9 42 42 H 0.96998 * 119.99518 * 184.95870 * 18 17 15 43 43 H 1.09000 * 115.55080 * 332.98535 * 23 14 12 44 44 H 1.09004 * 117.49939 * 0.02562 * 24 23 14 45 45 H 1.09000 * 117.49989 * 145.02562 * 24 23 14 46 46 H 1.08998 * 117.50275 * 252.51023 * 25 24 23 47 47 H 1.09004 * 117.51388 * 107.47248 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2354 0.1890 -2.2829 6 6 3.5955 0.7020 -2.2108 7 6 3.9075 1.6971 -3.3473 8 6 4.2205 0.9142 -4.5946 9 6 2.9836 0.7208 -5.4926 10 6 1.7111 0.3833 -4.6923 11 6 1.9725 -0.5988 -3.5827 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1635 -0.8967 3.5739 16 1 1.5011 -1.0600 4.4111 17 6 3.4784 -1.3419 3.6312 18 7 4.3801 -0.8336 2.8216 19 14 3.9645 -2.6631 4.8590 20 1 2.7735 -3.0673 5.6487 21 1 4.4991 -3.8422 4.1317 22 1 5.0071 -2.1305 5.7725 23 6 0.8649 0.9412 2.5891 24 6 0.6702 1.5138 3.9944 25 6 -0.4794 0.7795 3.3016 26 1 -0.3634 0.6153 0.8231 27 1 -0.3633 0.4050 -0.9444 28 1 -0.3632 -1.0205 0.1214 29 1 1.5392 1.0259 -2.2306 30 1 3.7327 1.2051 -1.2536 31 1 4.2920 -0.1342 -2.2726 32 1 3.0423 2.3365 -3.5219 33 1 4.7681 2.3075 -3.0736 34 1 4.6062 -0.0648 -4.3101 35 1 4.9872 1.4442 -5.1597 36 1 3.1823 -0.0888 -6.1950 37 1 2.8116 1.6377 -6.0563 38 1 0.9699 -0.0397 -5.3704 39 1 1.3104 1.3017 -4.2634 40 1 2.8456 -1.2038 -3.8271 41 1 1.1048 -1.2451 -3.4498 42 1 5.2807 -1.1938 2.8112 43 1 0.9132 1.6471 1.7599 44 1 1.1689 1.0043 4.8190 45 1 0.5906 2.5966 4.0902 46 1 -1.3153 1.3793 2.9415 47 1 -0.7374 -0.2134 3.6700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531853622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:59 Heat of formation + Delta-G solvation = -54.723518 kcal Electronic energy + Delta-G solvation = -25630.344801 eV Core-core repulsion = 22200.192894 eV Total energy + Delta-G solvation = -3430.151907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.61931 -38.56791 -36.61237 -35.68322 -32.75730 -32.12143 -31.90596 -30.84081 -29.68039 -25.20198 -24.74631 -24.34732 -22.93265 -21.72526 -20.98378 -20.44121 -19.48022 -19.19033 -16.85166 -16.39557 -16.06824 -15.55043 -14.77127 -14.70105 -14.58910 -14.27356 -13.84843 -13.70043 -13.39586 -13.14457 -12.96993 -12.68585 -12.44320 -12.18487 -12.09599 -11.91846 -11.41096 -11.19738 -11.17353 -10.89248 -10.86951 -10.79885 -10.76438 -10.60304 -10.46830 -10.35379 -10.31287 -10.10530 -10.03900 -9.91278 -9.70607 -9.11479 -8.62757 -7.83149 -7.00588 -6.05165 -3.83502 3.34348 3.43788 3.45803 3.87888 4.14706 4.37126 4.67014 4.75508 4.77838 4.87651 5.00807 5.14644 5.21635 5.27379 5.32421 5.36849 5.44107 5.49238 5.56019 5.62190 5.65906 5.70877 5.75289 5.82014 5.85324 5.88040 5.99717 6.09150 6.12787 6.17221 6.18132 6.20993 6.22378 6.27361 6.36197 6.41377 6.44541 6.50555 6.61031 6.65781 6.75342 6.94047 7.64466 7.77468 8.31723 9.09019 9.23136 9.69242 10.33865 11.01553 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018313 B = 0.004634 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.587262 B = 6041.460181 C = 6858.852866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.064 0.936 4 O -0.353 6.353 5 C 0.096 3.904 6 C -0.146 4.146 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.116 4.116 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.486 3.514 13 O -0.511 6.511 14 N -0.427 5.427 15 C -0.345 4.345 16 H 0.079 0.921 17 C 0.073 3.927 18 N -0.830 5.830 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.286 1.286 23 C 0.074 3.926 24 C -0.176 4.176 25 C -0.207 4.207 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.263 0.737 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 7.526 -11.941 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 H 0.081 0.919 4 O -0.271 6.271 5 C 0.038 3.962 6 C -0.183 4.183 7 C -0.149 4.149 8 C -0.158 4.158 9 C -0.153 4.153 10 C -0.153 4.153 11 C -0.150 4.150 12 C 0.272 3.728 13 O -0.386 6.386 14 N -0.150 5.150 15 C -0.471 4.471 16 H 0.096 0.904 17 C -0.138 4.138 18 N -0.464 5.464 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.213 1.213 23 C -0.032 4.032 24 C -0.214 4.214 25 C -0.246 4.246 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.217 6.816 -12.048 14.792 hybrid contribution 0.302 -0.177 0.588 0.684 sum -4.915 6.639 -11.460 14.127 Atomic orbital electron populations 1.22408 0.95232 1.03432 1.01905 1.21973 0.93735 0.95816 0.87053 0.91851 1.88102 1.86248 1.33347 1.19397 1.20972 0.95667 0.92486 0.87088 1.21053 0.98526 0.99651 0.99096 1.21256 1.01387 0.97646 0.94662 1.21393 0.97309 1.00839 0.96306 1.21920 0.94619 1.00974 0.97832 1.21273 0.97373 0.99374 0.97298 1.21369 1.02858 0.98044 0.92707 1.19556 0.84119 0.86081 0.83023 1.90540 1.36623 1.26504 1.84954 1.42693 1.45823 1.21808 1.04684 1.18876 0.94056 1.38230 0.95937 0.90378 1.25164 0.94974 0.96951 0.96663 1.69893 1.03095 1.36587 1.36823 0.86266 0.78350 0.81971 0.80185 1.19585 1.20647 1.21289 1.21729 0.94117 0.92008 0.95349 1.23112 1.01987 0.98479 0.97804 1.23338 0.92382 1.02033 1.06887 0.90273 0.92981 0.91799 0.93380 0.91693 0.90900 0.91852 0.91831 0.91751 0.92565 0.92408 0.92524 0.92087 0.92131 0.91057 0.90984 0.92659 0.88047 0.87439 0.89867 0.89805 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.11 37.16 0.34 -2.56 16 2 C 0.08 1.56 2.03 -27.88 -0.06 1.50 16 3 H 0.06 1.22 6.67 -51.92 -0.35 0.88 16 4 O -0.35 -7.31 9.07 -55.14 -0.50 -7.81 16 5 C 0.10 1.50 1.96 -29.60 -0.06 1.44 16 6 C -0.15 -2.26 4.78 -29.60 -0.14 -2.41 16 7 C -0.11 -1.32 5.61 -27.30 -0.15 -1.48 16 8 C -0.12 -1.29 5.32 -27.40 -0.15 -1.43 16 9 C -0.12 -1.10 5.85 -25.61 -0.15 -1.25 16 10 C -0.12 -1.20 5.31 -27.44 -0.15 -1.34 16 11 C -0.11 -1.49 5.24 -27.34 -0.14 -1.63 16 12 C 0.49 12.78 6.45 -10.99 -0.07 12.70 16 13 O -0.51 -15.87 14.16 -14.36 -0.20 -16.07 16 14 N -0.43 -10.77 2.85 -107.74 -0.31 -11.08 16 15 C -0.34 -9.50 7.85 -14.93 -0.12 -9.62 16 16 H 0.08 2.08 7.38 -52.49 -0.39 1.69 16 17 C 0.07 2.09 4.34 -17.47 -0.08 2.01 16 18 N -0.83 -25.12 11.69 55.50 0.65 -24.47 16 19 Si 0.91 22.29 29.60 -169.99 -5.03 17.26 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.07 1.47 4.33 -67.93 -0.29 1.18 16 24 C -0.18 -3.15 9.80 -26.73 -0.26 -3.41 16 25 C -0.21 -3.48 9.51 -26.73 -0.25 -3.73 16 26 H 0.08 1.23 4.59 -51.93 -0.24 0.99 16 27 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.69 7.01 -51.93 -0.36 0.32 16 30 H 0.06 1.14 7.51 -51.93 -0.39 0.75 16 31 H 0.07 1.25 7.47 -51.93 -0.39 0.86 16 32 H 0.06 0.69 6.97 -51.93 -0.36 0.33 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.75 6.63 -51.93 -0.34 0.41 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.61 6.63 -51.93 -0.34 0.27 16 40 H 0.07 0.98 6.98 -51.93 -0.36 0.62 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.26 7.69 8.32 -40.82 -0.34 7.35 16 43 H 0.10 1.79 6.17 -51.93 -0.32 1.47 16 44 H 0.11 2.15 6.81 -51.93 -0.35 1.79 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -33.45 354.77 -9.76 -43.21 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.98 Total: 3.64 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.73 Total: -10.01 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.34 Total: -35.55 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.70 Total: -23.88 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.45 -9.76 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531853622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.517 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds