Wall clock time and date at job start Tue Mar 31 2020 07:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09010 * 109.46611 * 2 1 4 4 O 1.42899 * 109.47012 * 240.00590 * 2 1 3 5 5 C 1.42899 * 113.99834 * 91.64726 * 4 2 1 6 6 C 1.45539 * 108.89768 * 88.21955 * 5 4 2 7 7 C 1.54249 * 112.32887 * 182.63826 * 6 5 4 8 8 C 1.50552 * 108.48076 * 279.88035 * 7 6 5 9 9 C 1.54071 * 112.41278 * 94.26796 * 8 7 6 10 10 C 1.54068 * 112.81577 * 318.27483 * 9 8 7 11 11 C 1.50469 * 112.49396 * 318.28695 * 10 9 8 12 12 C 1.50692 * 109.47430 * 120.00016 * 2 1 3 13 13 O 1.21292 * 120.00335 * 120.00152 * 12 2 1 14 14 N 1.34782 * 120.00168 * 300.00740 * 12 2 1 15 15 C 1.37099 * 119.99627 * 179.97438 * 14 12 2 16 16 H 1.07999 * 119.99545 * 222.75580 * 15 14 12 17 17 C 1.38947 * 120.00510 * 42.75913 * 15 14 12 18 18 N 1.31417 * 119.99918 * 19.51185 * 17 15 14 19 19 Si 1.86799 * 120.00289 * 199.51031 * 17 15 14 20 20 H 1.48508 * 109.46690 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47033 * 119.99773 * 19 17 15 22 22 H 1.48492 * 109.47570 * 240.00211 * 19 17 15 23 23 C 1.46491 * 120.00052 * 359.97438 * 14 12 2 24 24 C 1.52996 * 117.50133 * 187.27168 * 23 14 12 25 25 C 1.52996 * 60.00363 * 252.51088 * 24 23 14 26 26 H 1.08997 * 109.47294 * 306.78009 * 1 2 3 27 27 H 1.08996 * 109.47188 * 66.78630 * 1 2 3 28 28 H 1.09001 * 109.46622 * 186.78230 * 1 2 3 29 29 H 1.08996 * 108.87658 * 329.60839 * 5 4 2 30 30 H 1.09001 * 108.89380 * 303.34022 * 6 5 4 31 31 H 1.09003 * 108.90057 * 61.93248 * 6 5 4 32 32 H 1.08994 * 109.62633 * 39.67630 * 7 6 5 33 33 H 1.09002 * 109.62871 * 160.25580 * 7 6 5 34 34 H 1.08996 * 108.92892 * 333.51217 * 8 7 6 35 35 H 1.09006 * 108.83544 * 214.96151 * 8 7 6 36 36 H 1.09001 * 108.81143 * 197.41202 * 9 8 7 37 37 H 1.08997 * 108.81472 * 79.14182 * 9 8 7 38 38 H 1.08997 * 108.87313 * 197.50996 * 10 9 8 39 39 H 1.08999 * 108.87378 * 79.06568 * 10 9 8 40 40 H 1.08998 * 109.63381 * 334.44342 * 11 10 9 41 41 H 1.09004 * 109.79079 * 213.95639 * 11 10 9 42 42 H 0.96998 * 119.99518 * 184.95870 * 18 17 15 43 43 H 1.09000 * 115.55080 * 332.98535 * 23 14 12 44 44 H 1.09004 * 117.49939 * 0.02562 * 24 23 14 45 45 H 1.09000 * 117.49989 * 145.02562 * 24 23 14 46 46 H 1.08998 * 117.50275 * 252.51023 * 25 24 23 47 47 H 1.09004 * 117.51388 * 107.47248 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2354 0.1890 -2.2829 6 6 3.5955 0.7020 -2.2108 7 6 3.9075 1.6971 -3.3473 8 6 4.2205 0.9142 -4.5946 9 6 2.9836 0.7208 -5.4926 10 6 1.7111 0.3833 -4.6923 11 6 1.9725 -0.5988 -3.5827 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1635 -0.8967 3.5739 16 1 1.5011 -1.0600 4.4111 17 6 3.4784 -1.3419 3.6312 18 7 4.3801 -0.8336 2.8216 19 14 3.9645 -2.6631 4.8590 20 1 2.7735 -3.0673 5.6487 21 1 4.4991 -3.8422 4.1317 22 1 5.0071 -2.1305 5.7725 23 6 0.8649 0.9412 2.5891 24 6 0.6702 1.5138 3.9944 25 6 -0.4794 0.7795 3.3016 26 1 -0.3634 0.6153 0.8231 27 1 -0.3633 0.4050 -0.9444 28 1 -0.3632 -1.0205 0.1214 29 1 1.5392 1.0259 -2.2306 30 1 3.7327 1.2051 -1.2536 31 1 4.2920 -0.1342 -2.2726 32 1 3.0423 2.3365 -3.5219 33 1 4.7681 2.3075 -3.0736 34 1 4.6062 -0.0648 -4.3101 35 1 4.9872 1.4442 -5.1597 36 1 3.1823 -0.0888 -6.1950 37 1 2.8116 1.6377 -6.0563 38 1 0.9699 -0.0397 -5.3704 39 1 1.3104 1.3017 -4.2634 40 1 2.8456 -1.2038 -3.8271 41 1 1.1048 -1.2451 -3.4498 42 1 5.2807 -1.1938 2.8112 43 1 0.9132 1.6471 1.7599 44 1 1.1689 1.0043 4.8190 45 1 0.5906 2.5966 4.0902 46 1 -1.3153 1.3793 2.9415 47 1 -0.7374 -0.2134 3.6700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531853622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:58 Heat of formation + Delta-G solvation = -74.157998 kcal Electronic energy + Delta-G solvation = -25631.187544 eV Core-core repulsion = 22200.192894 eV Total energy + Delta-G solvation = -3430.994650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07586 -40.10094 -38.02888 -37.34644 -34.76315 -33.43976 -33.09562 -32.47667 -31.14213 -27.16853 -25.79552 -25.50176 -24.40119 -23.14160 -22.61145 -21.64577 -21.26143 -20.12523 -18.50410 -18.00986 -17.85422 -16.77146 -16.64073 -16.07591 -15.94394 -15.60879 -15.37228 -15.18452 -14.75925 -14.64552 -14.23676 -13.97285 -13.91830 -13.70049 -13.22970 -13.12196 -12.99365 -12.85663 -12.73134 -12.69876 -12.44900 -12.23750 -12.11669 -12.02464 -11.89294 -11.62744 -11.48044 -11.38166 -11.24007 -11.20292 -11.10655 -10.74319 -10.47662 -9.80016 -9.01745 -8.19531 -6.00810 1.33388 1.41016 1.48774 2.22427 2.32269 2.55731 3.09923 3.26164 3.37020 3.66059 3.80969 3.90870 3.99843 4.03428 4.15886 4.18745 4.24551 4.26163 4.29298 4.32286 4.35899 4.43605 4.45581 4.58768 4.73299 4.85058 4.89284 4.91542 4.96699 5.00101 5.04335 5.10420 5.20865 5.25213 5.26186 5.30056 5.32561 5.34259 5.39806 5.46419 5.47493 5.50437 5.57185 6.15449 6.39392 7.01063 7.23213 7.66575 8.34730 8.85573 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018313 B = 0.004634 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.587262 B = 6041.460181 C = 6858.852866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.087 3.913 3 H 0.074 0.926 4 O -0.388 6.388 5 C 0.090 3.910 6 C -0.141 4.141 7 C -0.102 4.102 8 C -0.122 4.122 9 C -0.113 4.113 10 C -0.112 4.112 11 C -0.107 4.107 12 C 0.465 3.535 13 O -0.578 6.578 14 N -0.439 5.439 15 C -0.350 4.350 16 H 0.082 0.918 17 C 0.019 3.981 18 N -0.870 5.870 19 Si 0.963 3.037 20 H -0.255 1.255 21 H -0.298 1.298 22 H -0.273 1.273 23 C 0.041 3.959 24 C -0.173 4.173 25 C -0.176 4.176 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.256 0.744 43 H 0.127 0.873 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.130 0.870 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 9.873 -13.141 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.092 0.908 4 O -0.308 6.308 5 C 0.033 3.967 6 C -0.179 4.179 7 C -0.139 4.139 8 C -0.160 4.160 9 C -0.151 4.151 10 C -0.149 4.149 11 C -0.144 4.144 12 C 0.254 3.746 13 O -0.458 6.458 14 N -0.161 5.161 15 C -0.477 4.477 16 H 0.100 0.900 17 C -0.187 4.187 18 N -0.506 5.506 19 Si 0.788 3.212 20 H -0.178 1.178 21 H -0.225 1.225 22 H -0.199 1.199 23 C -0.064 4.064 24 C -0.211 4.211 25 C -0.214 4.214 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.144 0.856 44 H 0.098 0.902 45 H 0.137 0.863 46 H 0.148 0.852 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.812 9.209 -13.214 17.901 hybrid contribution 1.052 -0.888 0.985 1.692 sum -6.760 8.322 -12.229 16.263 Atomic orbital electron populations 1.22330 0.91891 1.02973 1.04485 1.21814 0.95975 0.94912 0.84772 0.90833 1.88075 1.86683 1.35535 1.20482 1.21305 0.95892 0.93012 0.86477 1.21041 0.98168 0.99332 0.99393 1.21220 1.02355 0.96867 0.93506 1.21390 0.98644 0.99773 0.96155 1.21917 0.93378 1.02264 0.97515 1.21259 0.98322 0.98849 0.96476 1.21359 1.02025 0.98506 0.92550 1.20671 0.83201 0.85775 0.84970 1.90481 1.39588 1.29498 1.86271 1.42906 1.45903 1.23350 1.03950 1.19155 0.93861 1.38192 0.96538 0.90033 1.26013 0.95338 0.98909 0.98397 1.70006 1.03084 1.38119 1.39406 0.85379 0.78729 0.78842 0.78292 1.17817 1.22465 1.19875 1.22078 0.95619 0.91118 0.97603 1.23176 1.02072 1.00447 0.95400 1.23362 0.92195 1.01686 1.04193 0.88639 0.89468 0.93574 0.91055 0.94573 0.93980 0.89878 0.91490 0.93755 0.90884 0.91839 0.90405 0.90281 0.91137 0.92448 0.91426 0.93491 0.85565 0.90238 0.86290 0.85226 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 9.11 71.98 0.66 -4.36 16 2 C 0.09 3.57 2.03 29.85 0.06 3.63 16 3 H 0.07 2.82 6.67 -2.38 -0.02 2.80 16 4 O -0.39 -16.54 9.07 -129.95 -1.18 -17.72 16 5 C 0.09 2.79 1.96 28.74 0.06 2.85 16 6 C -0.14 -4.54 4.78 28.74 0.14 -4.40 16 7 C -0.10 -2.28 5.61 30.22 0.17 -2.11 16 8 C -0.12 -2.41 5.32 30.16 0.16 -2.25 16 9 C -0.11 -1.82 5.85 31.32 0.18 -1.63 16 10 C -0.11 -1.97 5.31 30.14 0.16 -1.81 16 11 C -0.11 -2.74 5.24 30.20 0.16 -2.59 16 12 C 0.47 25.33 6.45 87.65 0.57 25.90 16 13 O -0.58 -38.06 14.16 15.97 0.23 -37.84 16 14 N -0.44 -22.51 2.85 -613.16 -1.75 -24.26 16 15 C -0.35 -19.80 7.85 84.04 0.66 -19.14 16 16 H 0.08 4.42 7.38 -2.91 -0.02 4.40 16 17 C 0.02 1.14 4.34 84.92 0.37 1.51 16 18 N -0.87 -55.40 11.69 21.66 0.25 -55.15 16 19 Si 0.96 47.42 29.60 68.60 2.03 49.45 16 20 H -0.25 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 23 C 0.04 1.54 4.33 44.99 0.19 1.73 16 24 C -0.17 -5.79 9.80 30.59 0.30 -5.49 16 25 C -0.18 -5.32 9.51 30.59 0.29 -5.03 16 26 H 0.10 2.65 4.59 -2.39 -0.01 2.64 16 27 H 0.09 2.13 8.06 -2.39 -0.02 2.11 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.86 7.01 -2.39 -0.02 1.85 16 30 H 0.04 1.33 7.51 -2.39 -0.02 1.31 16 31 H 0.04 1.56 7.47 -2.39 -0.02 1.55 16 32 H 0.08 1.55 6.97 -2.39 -0.02 1.54 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.05 6.63 -2.39 -0.02 1.03 16 35 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.13 6.63 -2.39 -0.02 1.12 16 40 H 0.06 1.61 6.98 -2.39 -0.02 1.59 16 41 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.26 15.87 8.32 -92.71 -0.77 15.10 16 43 H 0.13 4.10 6.17 -2.39 -0.01 4.09 16 44 H 0.08 3.13 6.81 -2.38 -0.02 3.11 16 45 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 47 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -79.34 354.77 4.64 -74.70 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.94 Total: 24.04 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 4.12 Total: -13.21 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.50 Total: -79.41 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -0.95 Total: -55.56 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -79.34 4.64 -74.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531853622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.537 kcal (2) G-P(sol) polarization free energy of solvation -79.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds