Wall clock time and date at job start Tue Mar 31 2020 08:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00270 * 2 1 4 4 C 1.52995 * 109.47426 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47156 * 175.28539 * 4 3 2 6 6 C 1.50698 * 112.84896 * 302.84643 * 5 4 3 7 7 O 1.21290 * 119.99868 * 113.79453 * 6 5 4 8 8 N 1.34779 * 120.00366 * 293.79528 * 6 5 4 9 9 C 1.46931 * 120.63199 * 174.79559 * 8 6 5 10 10 C 1.53183 * 108.77263 * 233.58934 * 9 8 6 11 11 C 1.53045 * 109.31484 * 305.36303 * 10 9 8 12 12 C 1.50699 * 109.46352 * 181.39061 * 11 10 9 13 13 H 1.07998 * 120.00065 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99987 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99952 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99714 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47546 * 60.00174 * 16 14 12 18 18 H 1.48508 * 109.46944 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47369 * 300.00180 * 16 14 12 20 20 C 1.53033 * 109.53575 * 61.36651 * 11 10 9 21 21 C 1.46923 * 120.62762 * 354.77119 * 8 6 5 22 22 C 1.53781 * 113.61516 * 74.04389 * 5 4 3 23 23 C 1.53960 * 87.01850 * 89.23431 * 22 5 4 24 24 C 1.53784 * 113.61552 * 171.65639 * 5 4 3 25 25 H 1.09000 * 109.46941 * 60.00605 * 1 2 3 26 26 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47043 * 300.00277 * 1 2 3 28 28 H 1.09000 * 109.47367 * 59.99655 * 3 2 1 29 29 H 1.09003 * 109.46719 * 299.99757 * 3 2 1 30 30 H 1.08999 * 109.47598 * 55.28607 * 4 3 2 31 31 H 1.09002 * 109.47198 * 295.28351 * 4 3 2 32 32 H 1.08996 * 109.58261 * 113.80016 * 9 8 6 33 33 H 1.09002 * 109.58461 * 353.37360 * 9 8 6 34 34 H 1.08999 * 109.50417 * 65.31421 * 10 9 8 35 35 H 1.09004 * 109.49822 * 185.41332 * 10 9 8 36 36 H 1.09004 * 109.45765 * 301.34772 * 11 10 9 37 37 H 0.97002 * 119.99872 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.49929 * 178.68733 * 20 11 10 39 39 H 1.08998 * 109.49911 * 58.58979 * 20 11 10 40 40 H 1.08997 * 109.58782 * 246.20102 * 21 8 6 41 41 H 1.09001 * 109.58642 * 6.63134 * 21 8 6 42 42 H 1.09005 * 113.61534 * 203.74462 * 22 5 4 43 43 H 1.08994 * 113.61539 * 334.65581 * 22 5 4 44 44 H 1.09007 * 113.53258 * 270.81409 * 23 22 5 45 45 H 1.08993 * 113.74764 * 139.94790 * 23 22 5 46 46 H 1.08996 * 113.61431 * 25.34017 * 24 5 4 47 47 H 1.09000 * 113.61605 * 156.17066 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1574 2.5775 -0.1179 6 6 3.7000 3.3199 -1.3470 7 8 3.0225 4.3196 -1.2345 8 7 4.0437 2.8730 -2.5712 9 6 3.5128 3.5180 -3.7799 10 6 2.8631 2.4492 -4.6642 11 6 3.8761 1.3355 -4.9394 12 6 3.2513 0.2989 -5.8372 13 1 2.2339 0.4222 -6.1778 14 6 3.9789 -0.8063 -6.2247 15 7 5.2180 -0.9561 -5.8103 16 14 3.2041 -2.0915 -7.3370 17 1 2.8022 -1.4592 -8.6190 18 1 4.1870 -3.1722 -7.6042 19 1 2.0070 -2.6653 -6.6714 20 6 4.2907 0.6830 -3.6187 21 6 4.9567 1.7318 -2.7224 22 6 4.0622 3.4066 1.1737 23 6 5.4105 2.7830 1.5781 24 6 5.6828 2.5896 0.0769 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8518 0.5724 -0.8438 31 1 3.8626 0.7185 0.9301 32 1 4.3256 3.9984 -4.3246 33 1 2.7678 4.2626 -3.4995 34 1 1.9948 2.0330 -4.1535 35 1 2.5506 2.8979 -5.6072 36 1 4.7549 1.7566 -5.4280 37 1 5.7298 -1.7339 -6.0826 38 1 4.9944 -0.1254 -3.8174 39 1 3.4089 0.2835 -3.1177 40 1 5.8871 2.0666 -3.1809 41 1 5.1642 1.2979 -1.7443 42 1 4.1115 4.4826 1.0065 43 1 3.2340 3.1151 1.8196 44 1 5.3097 1.8471 2.1277 45 1 6.0921 3.4848 2.0586 46 1 6.1609 1.6395 -0.1611 47 1 6.1761 3.4410 -0.3918 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541976043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:01 Heat of formation + Delta-G solvation = -89.624132 kcal Electronic energy + Delta-G solvation = -25966.462655 eV Core-core repulsion = 22534.797343 eV Total energy + Delta-G solvation = -3431.665312 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08142 -39.45854 -38.67133 -38.08650 -35.32799 -33.21251 -32.46244 -31.66599 -28.47509 -27.69013 -26.81785 -26.27821 -24.71421 -23.86999 -23.50962 -21.88758 -20.31458 -19.35148 -18.41425 -17.85208 -17.49710 -17.39071 -16.86012 -16.49937 -16.24522 -15.93146 -15.63049 -15.20807 -14.92761 -14.65429 -14.57690 -14.18030 -14.01441 -13.52001 -13.44765 -13.31571 -13.12489 -13.00456 -12.79798 -12.57131 -12.50386 -12.33154 -12.17328 -12.15606 -12.03974 -11.86052 -11.48157 -11.39169 -11.20287 -11.01601 -10.86172 -10.68151 -10.46717 -10.33922 -9.54001 -8.07398 -6.20366 1.42130 1.42900 1.50066 1.60084 2.10472 2.44174 2.67726 3.19146 3.36645 3.55108 3.69186 3.88527 3.90047 4.05806 4.12823 4.20422 4.25275 4.32205 4.40452 4.45532 4.47828 4.50117 4.53762 4.61153 4.71378 4.78068 4.79261 4.81361 4.85129 4.91134 4.96508 4.99321 5.10556 5.15166 5.16559 5.23528 5.29586 5.43108 5.50036 5.57310 5.65418 5.98603 6.13038 6.14492 6.39428 6.53208 6.87926 7.17656 7.46953 8.95967 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.005160 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.096128 B = 5425.367566 C = 6057.080753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.068 3.932 4 C -0.091 4.091 5 C -0.107 4.107 6 C 0.523 3.477 7 O -0.588 6.588 8 N -0.600 5.600 9 C 0.115 3.885 10 C -0.112 4.112 11 C 0.047 3.953 12 C -0.536 4.536 13 H 0.044 0.956 14 C 0.021 3.979 15 N -0.910 5.910 16 Si 0.946 3.054 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.276 1.276 20 C -0.111 4.111 21 C 0.109 3.891 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.032 0.968 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.018 0.982 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.003 0.997 37 H 0.262 0.738 38 H 0.079 0.921 39 H 0.024 0.976 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 4.405 15.497 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.009 4.009 4 C -0.129 4.129 5 C -0.110 4.110 6 C 0.313 3.687 7 O -0.470 6.470 8 N -0.331 5.331 9 C -0.007 4.007 10 C -0.150 4.150 11 C 0.029 3.971 12 C -0.574 4.574 13 H 0.063 0.937 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.772 3.228 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.202 1.202 20 C -0.149 4.149 21 C -0.012 4.012 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.162 4.162 25 H 0.051 0.949 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.021 0.979 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.420 4.631 15.510 16.193 hybrid contribution -0.847 -0.485 -1.412 1.717 sum -1.267 4.146 14.098 14.749 Atomic orbital electron populations 1.22909 0.79753 1.03894 1.00429 1.87821 1.21327 1.28248 1.95488 1.22437 0.94532 0.84300 0.99611 1.21367 0.92683 0.93797 1.05008 1.22153 0.99638 0.96078 0.93093 1.20997 0.78677 0.84135 0.84905 1.90599 1.41555 1.27819 1.87023 1.48249 1.46692 1.32623 1.05516 1.21576 0.98529 0.95189 0.85421 1.21837 0.98481 0.96548 0.98124 1.18587 0.93350 0.92202 0.92998 1.21476 0.99050 1.06959 1.29881 0.93726 1.25593 0.95326 0.99606 0.97346 1.69930 1.09570 1.29709 1.45705 0.85799 0.78308 0.79079 0.79568 1.19981 1.20650 1.20192 1.21748 0.99419 0.98340 0.95413 1.22110 0.91620 0.85964 1.01538 1.22880 0.99560 0.99120 0.93462 1.22848 0.95923 1.02186 0.94908 1.23080 0.91255 1.03523 0.98325 0.94931 0.88091 0.92302 0.91700 0.96318 0.90947 0.87328 0.91279 0.90471 0.94418 0.91887 0.97861 0.92868 0.90244 0.95667 0.91768 0.87816 0.90492 0.90217 0.88005 0.89475 0.89112 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -12.41 10.70 -148.98 -1.59 -14.00 16 3 C 0.07 1.95 5.66 71.98 0.41 2.36 16 4 C -0.09 -2.35 4.61 30.59 0.14 -2.21 16 5 C -0.11 -2.71 0.29 -52.40 -0.02 -2.73 16 6 C 0.52 17.81 5.44 87.66 0.48 18.29 16 7 O -0.59 -23.35 15.60 -3.06 -0.05 -23.40 16 8 N -0.60 -21.44 2.97 -818.91 -2.43 -23.87 16 9 C 0.12 4.31 6.42 86.36 0.55 4.86 16 10 C -0.11 -4.72 5.30 30.67 0.16 -4.56 16 11 C 0.05 2.30 2.06 -11.51 -0.02 2.28 16 12 C -0.54 -29.22 8.56 25.60 0.22 -29.00 16 13 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 14 C 0.02 1.11 5.30 84.66 0.45 1.56 16 15 N -0.91 -50.32 11.31 21.45 0.24 -50.08 16 16 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 C -0.11 -4.95 5.02 30.67 0.15 -4.79 16 21 C 0.11 3.86 5.25 86.36 0.45 4.31 16 22 C -0.11 -2.39 6.80 31.18 0.21 -2.18 16 23 C -0.12 -1.89 7.74 31.18 0.24 -1.65 16 24 C -0.12 -2.51 5.80 31.12 0.18 -2.33 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.61 7.43 -2.39 -0.02 1.59 16 29 H 0.02 0.65 7.16 -2.39 -0.02 0.63 16 30 H 0.07 2.17 5.62 -2.39 -0.01 2.15 16 31 H 0.11 2.20 7.31 -2.39 -0.02 2.18 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.88 7.04 -2.39 -0.02 2.86 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.08 3.97 6.03 -2.38 -0.01 3.96 16 39 H 0.02 1.17 7.93 -2.39 -0.02 1.15 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.10 3.09 3.09 -2.39 -0.01 3.08 16 42 H 0.08 1.86 7.73 -2.38 -0.02 1.84 16 43 H 0.08 1.54 7.38 -2.39 -0.02 1.52 16 44 H 0.10 1.27 7.60 -2.38 -0.02 1.25 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.09 1.66 7.16 -2.39 -0.02 1.65 16 47 H 0.08 1.75 8.09 -2.39 -0.02 1.73 16 Total: -1.00 -64.11 355.60 3.99 -60.11 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.94 Total: 19.99 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.86 Total: -13.92 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -2.19 Total: -73.95 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.64 Total: -37.40 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.11 3.99 -60.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541976043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.511 kcal (2) G-P(sol) polarization free energy of solvation -64.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds