Wall clock time and date at job start Tue Mar 31 2020 07:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.27657 * 2 1 4 4 C 1.54943 * 110.31194 * 122.08585 * 2 1 3 5 5 C 1.55304 * 100.94495 * 155.45945 * 4 2 1 6 6 C 1.54379 * 102.25121 * 325.87151 * 5 4 2 7 7 H 1.09005 * 109.82931 * 261.74845 * 6 5 4 8 8 C 1.52997 * 109.83383 * 140.87016 * 6 5 4 9 9 C 1.53002 * 109.47542 * 174.99983 * 8 6 5 10 10 C 1.50695 * 109.47004 * 179.97438 * 9 8 6 11 11 O 1.21274 * 120.00413 * 0.27039 * 10 9 8 12 12 N 1.34784 * 119.99635 * 179.97438 * 10 9 8 13 13 C 1.46918 * 120.63039 * 359.71713 * 12 10 9 14 14 C 1.53629 * 108.54410 * 126.36956 * 13 12 10 15 15 C 1.53042 * 109.24095 * 54.85227 * 14 13 12 16 16 C 1.50702 * 109.46093 * 178.48877 * 15 14 13 17 17 H 1.07999 * 119.99500 * 120.07275 * 16 15 14 18 18 C 1.37870 * 120.00229 * 300.07691 * 16 15 14 19 19 N 1.31515 * 119.99867 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00187 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47273 * 90.00385 * 20 18 16 22 22 H 1.48501 * 109.47564 * 210.00398 * 20 18 16 23 23 H 1.48500 * 109.47292 * 330.00497 * 20 18 16 24 24 C 1.53042 * 109.54144 * 298.51747 * 15 14 13 25 25 C 1.46931 * 120.62757 * 179.97438 * 12 10 9 26 26 O 1.43236 * 107.58958 * 21.35199 * 6 5 4 27 27 H 1.09003 * 109.47244 * 297.91067 * 1 2 3 28 28 H 1.08993 * 109.46944 * 57.90966 * 1 2 3 29 29 H 1.08998 * 109.46891 * 177.91221 * 1 2 3 30 30 H 1.09005 * 111.12682 * 37.54328 * 4 2 1 31 31 H 1.08998 * 111.16559 * 273.39601 * 4 2 1 32 32 H 1.08995 * 110.85133 * 207.67732 * 5 4 2 33 33 H 1.08995 * 111.02186 * 84.13716 * 5 4 2 34 34 H 1.08997 * 109.47365 * 54.99427 * 8 6 5 35 35 H 1.09002 * 109.47075 * 294.99802 * 8 6 5 36 36 H 1.09005 * 109.47089 * 59.99653 * 9 8 6 37 37 H 1.09002 * 109.46787 * 299.99995 * 9 8 6 38 38 H 1.08995 * 109.59003 * 246.20126 * 13 12 10 39 39 H 1.08997 * 109.58851 * 6.63324 * 13 12 10 40 40 H 1.09001 * 109.63104 * 294.86584 * 14 13 12 41 41 H 1.08998 * 109.46269 * 174.74377 * 14 13 12 42 42 H 1.09006 * 109.45415 * 58.53401 * 15 14 13 43 43 H 0.97000 * 119.99778 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.49049 * 301.40836 * 24 15 14 45 45 H 1.08996 * 109.52462 * 181.32960 * 24 15 14 46 46 H 1.08994 * 109.58636 * 353.37407 * 25 12 10 47 47 H 1.09001 * 109.57902 * 113.79870 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7719 1.2311 5 6 3.4710 -1.1996 0.7211 6 6 3.2140 -1.4398 -0.7821 7 1 3.0684 -2.5042 -0.9668 8 6 4.4018 -0.9291 -1.6000 9 6 4.1956 -1.2825 -3.0743 10 6 5.3653 -0.7788 -3.8799 11 8 6.2767 -0.1990 -3.3285 12 7 5.4015 -0.9779 -5.2124 13 6 4.3111 -1.6897 -5.8928 14 6 3.7954 -0.8098 -7.0418 15 6 4.9656 -0.4342 -7.9537 16 6 4.4591 0.3983 -9.1033 17 1 4.8353 1.3997 -9.2516 18 6 3.5156 -0.1184 -9.9656 19 7 3.0733 0.6083 -10.9685 20 14 2.8654 -1.8508 -9.7094 21 1 1.6723 -1.8062 -8.8264 22 1 2.4891 -2.4373 -11.0207 23 1 3.9180 -2.6861 -9.0773 24 6 5.9973 0.3689 -7.1581 25 6 6.5349 -0.4922 -6.0114 26 8 2.0306 -0.7164 -1.1399 27 1 -0.3634 0.4811 0.9081 28 1 -0.3633 0.5459 -0.8706 29 1 -0.3633 -1.0270 -0.0374 30 1 1.4482 -1.6412 1.4513 31 1 2.1480 -0.1193 2.1005 32 1 3.7986 -2.1169 1.2101 33 1 4.1999 -0.4025 0.8674 34 1 5.3186 -1.3953 -1.2394 35 1 4.4781 0.1530 -1.4930 36 1 3.2787 -0.8161 -3.4349 37 1 4.1193 -2.3645 -3.1812 38 1 4.6831 -2.6338 -6.2906 39 1 3.5032 -1.8813 -5.1866 40 1 3.3453 0.0961 -6.6357 41 1 3.0498 -1.3611 -7.6148 42 1 5.4307 -1.3413 -8.3397 43 1 2.4097 0.2446 -11.5753 44 1 5.5264 1.2636 -6.7511 45 1 6.8193 0.6564 -7.8136 46 1 7.1947 0.1063 -5.3835 47 1 7.0849 -1.3406 -6.4186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543833094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:25 Heat of formation + Delta-G solvation = -101.284513 kcal Electronic energy + Delta-G solvation = -24548.147530 eV Core-core repulsion = 21115.976587 eV Total energy + Delta-G solvation = -3432.170944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13102 -39.56670 -37.09098 -34.02128 -33.50739 -32.49782 -31.65625 -30.96372 -30.25622 -27.10225 -26.03255 -23.67077 -22.61900 -22.33049 -21.78483 -20.68146 -19.75758 -18.35012 -17.27240 -17.01735 -16.64592 -16.08522 -15.45510 -15.27430 -14.71778 -14.47000 -14.00289 -13.88474 -13.52731 -13.50913 -13.19901 -13.08009 -12.74888 -12.60220 -12.43594 -12.23752 -12.02598 -11.99224 -11.95121 -11.72291 -11.25295 -11.06714 -11.04344 -10.96134 -10.88342 -10.69280 -10.17797 -10.13709 -9.75002 -9.66769 -9.46062 -9.28499 -9.07346 -8.56588 -8.14769 -6.09312 -4.08580 2.91710 3.21914 3.31571 3.32454 3.38534 3.54394 4.21919 4.37268 4.43406 4.46133 4.77322 4.86401 4.89054 5.05208 5.14083 5.16521 5.19624 5.30911 5.35334 5.41384 5.43102 5.45378 5.58562 5.63592 5.67128 5.69928 5.73664 5.81931 5.85909 5.90572 5.92217 6.01821 6.08550 6.18566 6.22511 6.32042 6.65838 6.66013 6.78259 6.91252 6.93821 7.19510 7.49059 7.72556 7.78913 8.47151 8.50533 8.95149 9.52645 11.04155 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.003549 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.070051 B = 7888.325863 C = 8788.344227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.079 0.921 8 C -0.110 4.110 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.558 6.558 12 N -0.603 5.603 13 C 0.101 3.899 14 C -0.135 4.135 15 C 0.015 3.985 16 C -0.513 4.513 17 H 0.073 0.927 18 C 0.068 3.932 19 N -0.901 5.901 20 Si 0.886 3.114 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.265 1.265 24 C -0.113 4.113 25 C 0.108 3.892 26 O -0.372 6.372 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -6.451 23.373 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.189 4.189 6 C 0.022 3.978 7 H 0.097 0.903 8 C -0.148 4.148 9 C -0.176 4.176 10 C 0.301 3.699 11 O -0.437 6.437 12 N -0.335 5.335 13 C -0.022 4.022 14 C -0.173 4.173 15 C -0.004 4.004 16 C -0.551 4.551 17 H 0.091 0.909 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.190 1.190 24 C -0.151 4.151 25 C -0.014 4.014 26 O -0.292 6.292 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.799 -6.137 23.283 24.145 hybrid contribution -0.515 -0.937 0.016 1.070 sum -2.315 -7.074 23.298 24.458 Atomic orbital electron populations 1.21882 0.93795 1.02797 1.02378 1.22944 0.94783 0.95696 0.84904 0.91297 1.23315 0.96297 1.00870 0.98503 1.23163 0.97724 1.02815 0.95240 1.22787 0.85514 0.96106 0.93360 0.90264 1.21721 0.97081 1.02768 0.93275 1.21635 0.98113 1.02433 0.95466 1.20668 0.87899 0.79221 0.82090 1.90631 1.39214 1.43424 1.70443 1.48172 1.22493 1.56295 1.06578 1.22023 0.88924 0.95438 0.95800 1.22450 1.00313 0.98908 0.95626 1.19130 0.91661 0.96197 0.93438 1.21053 1.23152 1.01964 1.08894 0.90866 1.25050 0.96121 0.97313 0.94893 1.69903 1.30787 1.37085 1.16162 0.86860 0.79492 0.85576 0.76401 1.20487 1.22488 1.18995 1.21813 0.99604 0.98327 0.95366 1.21739 0.88047 0.98305 0.93284 1.88471 1.41919 1.64776 1.33997 0.91422 0.91726 0.91970 0.90389 0.90100 0.90089 0.90170 0.90386 0.90729 0.88197 0.89351 0.91808 0.90543 0.91557 0.92457 0.95439 0.92667 0.92343 0.91409 0.89932 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.62 37.16 0.36 -0.82 16 2 C 0.07 0.67 4.07 -25.71 -0.10 0.57 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -1.07 6.57 -24.48 -0.16 -1.23 16 5 C -0.15 -1.16 6.55 -24.79 -0.16 -1.32 16 6 C 0.08 0.78 3.51 -26.01 -0.09 0.69 16 7 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.11 -1.28 4.07 -26.73 -0.11 -1.39 16 9 C -0.14 -1.75 3.96 -27.88 -0.11 -1.86 16 10 C 0.51 8.48 7.70 -10.98 -0.08 8.39 16 11 O -0.56 -10.72 15.40 5.56 0.09 -10.63 16 12 N -0.60 -10.26 2.97 -172.54 -0.51 -10.78 16 13 C 0.10 1.65 6.37 -3.49 -0.02 1.63 16 14 C -0.13 -2.76 4.86 -26.38 -0.13 -2.89 16 15 C 0.01 0.33 1.65 -91.73 -0.15 0.18 16 16 C -0.51 -14.13 9.14 -34.44 -0.31 -14.45 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 19 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 20 Si 0.89 21.24 24.38 -169.99 -4.14 17.09 16 21 H -0.28 -6.42 6.86 56.52 0.39 -6.04 16 22 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.26 -5.96 6.53 56.52 0.37 -5.59 16 24 C -0.11 -2.25 5.30 -26.63 -0.14 -2.39 16 25 C 0.11 1.89 6.43 -3.73 -0.02 1.87 16 26 O -0.37 -4.33 10.34 -35.23 -0.36 -4.69 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.62 7.85 -51.93 -0.41 0.21 16 34 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.10 1.33 7.46 -51.93 -0.39 0.94 16 37 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.05 5.93 -51.93 -0.31 0.75 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.06 1.23 3.24 -51.93 -0.17 1.06 16 42 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -31.91 357.65 -8.47 -40.38 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.35 Total: 1.04 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.34 Total: -11.20 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.26 Total: -37.37 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.28 Total: -15.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.91 -8.47 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.909 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds