Wall clock time and date at job start Tue Mar 31 2020 07:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.27657 * 2 1 4 4 C 1.54943 * 110.31194 * 122.08585 * 2 1 3 5 5 C 1.55304 * 100.94495 * 155.45945 * 4 2 1 6 6 C 1.54379 * 102.25121 * 325.87151 * 5 4 2 7 7 H 1.09005 * 109.82931 * 261.74845 * 6 5 4 8 8 C 1.52997 * 109.83383 * 140.87016 * 6 5 4 9 9 C 1.53002 * 109.47542 * 174.99983 * 8 6 5 10 10 C 1.50695 * 109.47004 * 179.97438 * 9 8 6 11 11 O 1.21274 * 120.00413 * 0.27039 * 10 9 8 12 12 N 1.34784 * 119.99635 * 179.97438 * 10 9 8 13 13 C 1.46918 * 120.63039 * 359.71713 * 12 10 9 14 14 C 1.53629 * 108.54410 * 126.36956 * 13 12 10 15 15 C 1.53042 * 109.24095 * 54.85227 * 14 13 12 16 16 C 1.50702 * 109.46093 * 178.48877 * 15 14 13 17 17 H 1.07999 * 119.99500 * 120.07275 * 16 15 14 18 18 C 1.37870 * 120.00229 * 300.07691 * 16 15 14 19 19 N 1.31515 * 119.99867 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00187 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47273 * 90.00385 * 20 18 16 22 22 H 1.48501 * 109.47564 * 210.00398 * 20 18 16 23 23 H 1.48500 * 109.47292 * 330.00497 * 20 18 16 24 24 C 1.53042 * 109.54144 * 298.51747 * 15 14 13 25 25 C 1.46931 * 120.62757 * 179.97438 * 12 10 9 26 26 O 1.43236 * 107.58958 * 21.35199 * 6 5 4 27 27 H 1.09003 * 109.47244 * 297.91067 * 1 2 3 28 28 H 1.08993 * 109.46944 * 57.90966 * 1 2 3 29 29 H 1.08998 * 109.46891 * 177.91221 * 1 2 3 30 30 H 1.09005 * 111.12682 * 37.54328 * 4 2 1 31 31 H 1.08998 * 111.16559 * 273.39601 * 4 2 1 32 32 H 1.08995 * 110.85133 * 207.67732 * 5 4 2 33 33 H 1.08995 * 111.02186 * 84.13716 * 5 4 2 34 34 H 1.08997 * 109.47365 * 54.99427 * 8 6 5 35 35 H 1.09002 * 109.47075 * 294.99802 * 8 6 5 36 36 H 1.09005 * 109.47089 * 59.99653 * 9 8 6 37 37 H 1.09002 * 109.46787 * 299.99995 * 9 8 6 38 38 H 1.08995 * 109.59003 * 246.20126 * 13 12 10 39 39 H 1.08997 * 109.58851 * 6.63324 * 13 12 10 40 40 H 1.09001 * 109.63104 * 294.86584 * 14 13 12 41 41 H 1.08998 * 109.46269 * 174.74377 * 14 13 12 42 42 H 1.09006 * 109.45415 * 58.53401 * 15 14 13 43 43 H 0.97000 * 119.99778 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.49049 * 301.40836 * 24 15 14 45 45 H 1.08996 * 109.52462 * 181.32960 * 24 15 14 46 46 H 1.08994 * 109.58636 * 353.37407 * 25 12 10 47 47 H 1.09001 * 109.57902 * 113.79870 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7719 1.2311 5 6 3.4710 -1.1996 0.7211 6 6 3.2140 -1.4398 -0.7821 7 1 3.0684 -2.5042 -0.9668 8 6 4.4018 -0.9291 -1.6000 9 6 4.1956 -1.2825 -3.0743 10 6 5.3653 -0.7788 -3.8799 11 8 6.2767 -0.1990 -3.3285 12 7 5.4015 -0.9779 -5.2124 13 6 4.3111 -1.6897 -5.8928 14 6 3.7954 -0.8098 -7.0418 15 6 4.9656 -0.4342 -7.9537 16 6 4.4591 0.3983 -9.1033 17 1 4.8353 1.3997 -9.2516 18 6 3.5156 -0.1184 -9.9656 19 7 3.0733 0.6083 -10.9685 20 14 2.8654 -1.8508 -9.7094 21 1 1.6723 -1.8062 -8.8264 22 1 2.4891 -2.4373 -11.0207 23 1 3.9180 -2.6861 -9.0773 24 6 5.9973 0.3689 -7.1581 25 6 6.5349 -0.4922 -6.0114 26 8 2.0306 -0.7164 -1.1399 27 1 -0.3634 0.4811 0.9081 28 1 -0.3633 0.5459 -0.8706 29 1 -0.3633 -1.0270 -0.0374 30 1 1.4482 -1.6412 1.4513 31 1 2.1480 -0.1193 2.1005 32 1 3.7986 -2.1169 1.2101 33 1 4.1999 -0.4025 0.8674 34 1 5.3186 -1.3953 -1.2394 35 1 4.4781 0.1530 -1.4930 36 1 3.2787 -0.8161 -3.4349 37 1 4.1193 -2.3645 -3.1812 38 1 4.6831 -2.6338 -6.2906 39 1 3.5032 -1.8813 -5.1866 40 1 3.3453 0.0961 -6.6357 41 1 3.0498 -1.3611 -7.6148 42 1 5.4307 -1.3413 -8.3397 43 1 2.4097 0.2446 -11.5753 44 1 5.5264 1.2636 -6.7511 45 1 6.8193 0.6564 -7.8136 46 1 7.1947 0.1063 -5.3835 47 1 7.0849 -1.3406 -6.4186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543833094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:24 Heat of formation + Delta-G solvation = -121.194013 kcal Electronic energy + Delta-G solvation = -24549.010871 eV Core-core repulsion = 21115.976587 eV Total energy + Delta-G solvation = -3433.034284 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27788 -40.47802 -38.60571 -35.32371 -34.91549 -33.43399 -33.16407 -32.27017 -31.31776 -28.49800 -27.27602 -24.85267 -24.19307 -23.59311 -22.42475 -21.63975 -21.11608 -19.73618 -18.87954 -18.17887 -17.94750 -17.02256 -16.72789 -16.55597 -16.33905 -15.35788 -15.23182 -15.01717 -14.78887 -14.72814 -14.62398 -14.20458 -14.12690 -13.76775 -13.63876 -13.52729 -13.21883 -13.15525 -12.81070 -12.61015 -12.57753 -12.29754 -12.12060 -12.02224 -11.88181 -11.70767 -11.64225 -11.58961 -11.50282 -11.19040 -11.02933 -10.74165 -10.63091 -10.40514 -9.58074 -8.28301 -6.33641 1.32794 1.39603 1.50415 1.63876 2.06798 2.35224 2.87346 3.06729 3.47602 3.63096 3.83082 3.90633 3.97791 4.10245 4.12882 4.18853 4.22270 4.26886 4.32146 4.40479 4.44147 4.49988 4.54804 4.63489 4.72161 4.75580 4.76193 4.81558 4.86004 4.93236 4.94646 4.98204 5.04212 5.06631 5.12999 5.16016 5.25191 5.32371 5.38129 5.39240 5.58443 5.67143 5.74159 6.21722 6.31178 6.47320 6.73392 7.17640 7.31964 8.88981 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.003549 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.070051 B = 7888.325863 C = 8788.344227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.060 0.940 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.079 3.921 7 H 0.094 0.906 8 C -0.105 4.105 9 C -0.130 4.130 10 C 0.509 3.491 11 O -0.589 6.589 12 N -0.608 5.608 13 C 0.108 3.892 14 C -0.134 4.134 15 C 0.015 3.985 16 C -0.523 4.523 17 H 0.024 0.976 18 C 0.005 3.995 19 N -0.955 5.955 20 Si 0.953 3.047 21 H -0.260 1.260 22 H -0.303 1.303 23 H -0.233 1.233 24 C -0.107 4.107 25 C 0.116 3.884 26 O -0.397 6.397 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.034 0.966 43 H 0.265 0.735 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 -9.757 26.094 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.005 3.995 3 H 0.078 0.922 4 C -0.181 4.181 5 C -0.188 4.188 6 C 0.022 3.978 7 H 0.112 0.888 8 C -0.143 4.143 9 C -0.170 4.170 10 C 0.300 3.700 11 O -0.470 6.470 12 N -0.340 5.340 13 C -0.015 4.015 14 C -0.172 4.172 15 C -0.004 4.004 16 C -0.560 4.560 17 H 0.043 0.957 18 C -0.192 4.192 19 N -0.596 5.596 20 Si 0.779 3.221 21 H -0.186 1.186 22 H -0.231 1.231 23 H -0.156 1.156 24 C -0.145 4.145 25 C -0.006 4.006 26 O -0.318 6.318 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.384 -9.441 26.034 27.795 hybrid contribution -0.274 0.275 -0.883 0.964 sum -2.658 -9.166 25.151 26.901 Atomic orbital electron populations 1.21876 0.93024 1.02880 1.02762 1.23126 0.95487 0.95466 0.85389 0.92197 1.23297 0.95761 1.01159 0.97930 1.23175 0.98030 1.03618 0.93946 1.22860 0.84237 0.96454 0.94291 0.88793 1.21679 0.98306 1.01329 0.93028 1.21684 0.95906 1.04072 0.95319 1.21344 0.88402 0.78364 0.81933 1.90620 1.40724 1.44711 1.70969 1.48272 1.22438 1.56396 1.06901 1.22061 0.89659 0.94787 0.94944 1.22307 0.98970 0.99240 0.96669 1.19090 0.93146 0.95675 0.92503 1.21387 1.23005 1.00708 1.10949 0.95743 1.26037 0.96384 1.02456 0.94295 1.70081 1.32041 1.39725 1.17711 0.85778 0.80094 0.79686 0.76557 1.18596 1.23092 1.15642 1.21695 0.98854 0.97837 0.96131 1.21591 0.88375 0.98490 0.92182 1.88440 1.42530 1.65196 1.35596 0.89519 0.93047 0.91830 0.89416 0.88627 0.88190 0.90679 0.90102 0.93132 0.88409 0.86303 0.89650 0.87215 0.93124 0.92829 0.94771 0.92628 0.94391 0.91693 0.90229 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.62 71.98 0.69 -1.39 16 2 C 0.06 1.04 4.07 31.26 0.13 1.17 16 3 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 4 C -0.14 -1.64 6.57 32.05 0.21 -1.43 16 5 C -0.15 -1.90 6.55 31.85 0.21 -1.69 16 6 C 0.08 1.35 3.51 31.06 0.11 1.46 16 7 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 8 C -0.11 -2.24 4.07 30.59 0.12 -2.12 16 9 C -0.13 -2.97 3.96 29.85 0.12 -2.85 16 10 C 0.51 15.75 7.70 87.65 0.67 16.43 16 11 O -0.59 -22.02 15.40 -3.01 -0.05 -22.07 16 12 N -0.61 -19.11 2.97 -818.17 -2.43 -21.54 16 13 C 0.11 3.10 6.37 86.51 0.55 3.65 16 14 C -0.13 -5.18 4.86 30.82 0.15 -5.03 16 15 C 0.01 0.66 1.65 -11.51 -0.02 0.64 16 16 C -0.52 -29.76 9.14 25.60 0.23 -29.53 16 17 H 0.02 1.57 7.99 -2.91 -0.02 1.54 16 18 C 0.00 0.26 5.45 84.65 0.46 0.72 16 19 N -0.96 -60.13 13.96 21.44 0.30 -59.83 16 20 Si 0.95 42.92 24.38 68.60 1.67 44.59 16 21 H -0.26 -10.94 6.86 99.48 0.68 -10.25 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.23 -9.25 6.53 99.48 0.65 -8.60 16 24 C -0.11 -4.27 5.30 30.66 0.16 -4.11 16 25 C 0.12 3.87 6.43 86.35 0.55 4.42 16 26 O -0.40 -8.57 10.34 -148.98 -1.54 -10.11 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.85 8.06 -2.38 -0.02 0.83 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.02 7.85 -2.39 -0.02 1.01 16 34 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 35 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.10 2.33 7.46 -2.38 -0.02 2.31 16 37 H 0.12 2.01 7.93 -2.39 -0.02 1.99 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.11 2.47 5.93 -2.39 -0.01 2.46 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 2.12 3.24 -2.39 -0.01 2.12 16 42 H 0.03 1.49 7.20 -2.38 -0.02 1.48 16 43 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.08 2.72 7.01 -2.39 -0.02 2.71 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -72.29 357.65 3.16 -69.13 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.84 Total: 19.50 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 4.36 Total: -19.67 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.13 Total: -81.37 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.59 Total: -32.17 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.67 Total: 44.59 kcal Total: -72.29 3.16 -69.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.061 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds