Wall clock time and date at job start Tue Mar 31 2020 07:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.42310 * 2 1 4 4 C 1.54487 * 110.37231 * 122.31554 * 2 1 3 5 5 C 1.54507 * 104.06371 * 142.80529 * 4 2 1 6 6 C 1.54484 * 104.06288 * 0.02562 * 5 4 2 7 7 H 1.08996 * 110.37346 * 94.95901 * 6 5 4 8 8 C 1.53000 * 110.36989 * 217.18773 * 6 5 4 9 9 C 1.52997 * 109.47188 * 184.99605 * 8 6 5 10 10 C 1.50700 * 109.47413 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99940 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99969 * 180.02562 * 10 9 8 13 13 C 1.46933 * 120.62609 * 179.97438 * 12 10 9 14 14 C 1.53188 * 108.77395 * 233.58365 * 13 12 10 15 15 C 1.53033 * 109.31833 * 305.37043 * 14 13 12 16 16 C 1.50699 * 109.46460 * 181.38825 * 15 14 13 17 17 H 1.08007 * 119.99641 * 354.50657 * 16 15 14 18 18 C 1.37880 * 120.00558 * 174.51237 * 16 15 14 19 19 N 1.31503 * 120.00305 * 163.52002 * 18 16 15 20 20 Si 1.86798 * 119.99390 * 343.51912 * 18 16 15 21 21 H 1.48500 * 109.47199 * 269.99880 * 20 18 16 22 22 H 1.48499 * 109.46918 * 150.00354 * 20 18 16 23 23 H 1.48501 * 109.47625 * 30.00111 * 20 18 16 24 24 C 1.53041 * 109.53958 * 61.36195 * 15 14 13 25 25 C 1.46925 * 120.63295 * 359.97438 * 12 10 9 26 26 O 1.44430 * 104.80350 * 336.01634 * 6 5 4 27 27 H 1.09006 * 109.47021 * 297.68476 * 1 2 3 28 28 H 1.08997 * 109.47086 * 57.68743 * 1 2 3 29 29 H 1.09003 * 109.47279 * 177.68970 * 1 2 3 30 30 H 1.08996 * 110.50866 * 24.16192 * 4 2 1 31 31 H 1.08996 * 110.50741 * 261.45495 * 4 2 1 32 32 H 1.08998 * 110.51312 * 241.35492 * 5 4 2 33 33 H 1.08997 * 110.62551 * 118.70040 * 5 4 2 34 34 H 1.09007 * 109.47368 * 64.99730 * 8 6 5 35 35 H 1.09000 * 109.46920 * 304.99974 * 8 6 5 36 36 H 1.09007 * 109.46864 * 59.99816 * 9 8 6 37 37 H 1.08994 * 109.47454 * 300.00476 * 9 8 6 38 38 H 1.09007 * 109.58134 * 113.80254 * 13 12 10 39 39 H 1.08997 * 109.58658 * 353.37828 * 13 12 10 40 40 H 1.09005 * 109.49829 * 185.41551 * 14 13 12 41 41 H 1.08996 * 109.52451 * 65.34149 * 14 13 12 42 42 H 1.09002 * 109.46026 * 301.35921 * 15 14 13 43 43 H 0.97008 * 120.00207 * 354.80912 * 19 18 16 44 44 H 1.09003 * 109.49128 * 58.58908 * 24 15 14 45 45 H 1.09002 * 109.50040 * 178.68278 * 24 15 14 46 46 H 1.09001 * 109.58670 * 246.19888 * 25 12 10 47 47 H 1.08995 * 109.58233 * 6.63047 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 6 2.0677 -0.7742 1.2239 5 6 3.3177 -1.5059 0.6858 6 6 3.3876 -1.0867 -0.7994 7 1 4.0544 -0.2332 -0.9219 8 6 3.8603 -2.2587 -1.6619 9 6 4.0416 -1.7884 -3.1064 10 6 4.5079 -2.9426 -3.9558 11 8 4.6779 -4.0341 -3.4552 12 7 4.7359 -2.7619 -5.2718 13 6 5.1912 -3.8774 -6.1127 14 6 6.4649 -3.4515 -6.8496 15 6 6.1963 -2.1549 -7.6168 16 6 7.4372 -1.7510 -8.3704 17 1 8.3537 -2.3073 -8.2392 18 6 7.4028 -0.6714 -9.2274 19 7 8.5245 -0.1168 -9.6317 20 14 5.7627 0.0033 -9.8139 21 1 5.3626 -0.6873 -11.0662 22 1 5.8904 1.4602 -10.0714 23 1 4.7311 -0.2265 -8.7707 24 6 5.8145 -1.0472 -6.6322 25 6 4.5338 -1.4457 -5.8928 26 8 2.0331 -0.7229 -1.1444 27 1 -0.3633 0.4775 0.9101 28 1 -0.3633 0.5493 -0.8685 29 1 -0.3634 -1.0268 -0.0414 30 1 1.3275 -1.4921 1.5771 31 1 2.3429 -0.0841 2.0215 32 1 3.1954 -2.5855 0.7730 33 1 4.2119 -1.1796 1.2168 34 1 3.1178 -3.0561 -1.6299 35 1 4.8104 -2.6314 -1.2791 36 1 4.7842 -0.9910 -3.1384 37 1 3.0916 -1.4156 -3.4892 38 1 4.4165 -4.1286 -6.8373 39 1 5.4036 -4.7440 -5.4866 40 1 6.7594 -4.2338 -7.5492 41 1 7.2656 -3.2882 -6.1284 42 1 5.3790 -2.3121 -8.3208 43 1 9.3726 -0.4178 -9.2694 44 1 6.6211 -0.9064 -5.9126 45 1 5.6461 -0.1182 -7.1770 46 1 3.7055 -1.4983 -6.5994 47 1 4.3127 -0.7080 -5.1216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543833095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:28 Heat of formation + Delta-G solvation = -108.879449 kcal Electronic energy + Delta-G solvation = -24397.223758 eV Core-core repulsion = 20964.723473 eV Total energy + Delta-G solvation = -3432.500285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09352 -39.55752 -37.06819 -34.07091 -33.54465 -32.47784 -31.65755 -30.92557 -30.25153 -27.05923 -25.84759 -23.54666 -22.47852 -22.21389 -21.48158 -21.01501 -19.68985 -18.32369 -17.57933 -16.84993 -16.74187 -16.27949 -15.43398 -15.24129 -15.05197 -14.15016 -14.07361 -13.67969 -13.51432 -13.46131 -13.35092 -12.96275 -12.85030 -12.53743 -12.49145 -12.38753 -12.01182 -11.91617 -11.64599 -11.50053 -11.27981 -11.01998 -10.96496 -10.84444 -10.77754 -10.61616 -10.33878 -10.05942 -9.93932 -9.66905 -9.49178 -9.41958 -8.83344 -8.33532 -8.13733 -6.44226 -4.08015 2.91751 3.33581 3.37916 3.41478 3.55804 3.57093 4.30974 4.35697 4.48588 4.61551 4.63939 4.79479 4.90813 5.03403 5.12748 5.16034 5.21426 5.26998 5.28915 5.40898 5.46465 5.51419 5.58194 5.65148 5.68752 5.73237 5.74437 5.79400 5.83730 5.87495 5.96216 6.01330 6.03382 6.16601 6.28723 6.33973 6.67382 6.70550 6.73164 6.82638 6.95112 7.25823 7.49680 7.79361 8.13287 8.37060 8.47266 8.88867 9.60488 10.92526 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.003202 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.572612 B = 8741.856558 C = 9391.734486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.074 3.926 7 H 0.070 0.930 8 C -0.095 4.095 9 C -0.138 4.138 10 C 0.512 3.488 11 O -0.558 6.558 12 N -0.603 5.603 13 C 0.108 3.892 14 C -0.113 4.113 15 C 0.021 3.979 16 C -0.597 4.597 17 H 0.054 0.946 18 C 0.030 3.970 19 N -0.909 5.909 20 Si 1.044 2.956 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.271 1.271 24 C -0.130 4.130 25 C 0.101 3.899 26 O -0.366 6.366 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.268 0.732 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.485 0.741 19.749 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.017 3.983 7 H 0.088 0.912 8 C -0.132 4.132 9 C -0.178 4.178 10 C 0.301 3.699 11 O -0.438 6.438 12 N -0.335 5.335 13 C -0.014 4.014 14 C -0.152 4.152 15 C 0.002 3.998 16 C -0.635 4.635 17 H 0.072 0.928 18 C -0.175 4.175 19 N -0.543 5.543 20 Si 0.872 3.128 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.196 1.196 24 C -0.168 4.168 25 C -0.022 4.022 26 O -0.286 6.286 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.183 1.248 18.793 24.192 hybrid contribution 0.981 -0.914 1.049 1.702 sum -14.202 0.334 19.842 24.403 Atomic orbital electron populations 1.21798 0.93316 1.02959 1.02310 1.22954 0.95274 0.95425 0.85289 0.91503 1.22999 0.97839 0.99759 0.98305 1.22978 0.98351 1.01783 0.95823 1.23062 0.84668 0.97148 0.93469 0.91197 1.21397 1.02522 0.96540 0.92787 1.21658 1.03370 0.97440 0.95305 1.20634 0.77205 0.89952 0.82116 1.90635 1.53624 1.27068 1.72466 1.48180 1.65580 1.11745 1.08000 1.21743 0.97147 0.89134 0.93347 1.21839 0.95213 0.99580 0.98534 1.18990 0.97552 0.90377 0.92860 1.22004 0.96463 1.16461 1.28571 0.92766 1.25789 1.03719 0.93703 0.94278 1.70794 0.98867 1.40401 1.44221 0.84097 0.75717 0.76429 0.76544 1.21397 1.21380 1.19618 1.22384 0.94426 1.00980 0.99043 1.21971 0.99859 0.83120 0.97239 1.89169 1.27040 1.74403 1.37997 0.91327 0.91829 0.91772 0.90632 0.90736 0.90360 0.90522 0.90370 0.89897 0.89031 0.88481 0.92162 0.90076 0.91771 0.92771 0.95941 0.92231 0.92499 0.91448 0.91791 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.52 37.16 0.35 -0.70 16 2 C 0.07 0.58 3.92 -25.95 -0.10 0.47 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.15 -1.09 6.63 -25.16 -0.17 -1.25 16 5 C -0.15 -1.23 6.63 -25.16 -0.17 -1.40 16 6 C 0.07 0.74 3.25 -25.95 -0.08 0.65 16 7 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 8 C -0.09 -1.11 4.13 -26.73 -0.11 -1.22 16 9 C -0.14 -1.77 3.98 -27.88 -0.11 -1.88 16 10 C 0.51 8.53 7.70 -10.99 -0.08 8.45 16 11 O -0.56 -10.83 15.40 5.56 0.09 -10.75 16 12 N -0.60 -10.34 2.97 -172.79 -0.51 -10.86 16 13 C 0.11 1.93 6.43 -3.71 -0.02 1.90 16 14 C -0.11 -2.29 5.30 -26.62 -0.14 -2.43 16 15 C 0.02 0.48 1.61 -91.73 -0.15 0.34 16 16 C -0.60 -16.33 8.83 -34.44 -0.30 -16.64 16 17 H 0.05 1.62 7.99 -52.48 -0.42 1.20 16 18 C 0.03 0.84 5.34 -17.82 -0.10 0.74 16 19 N -0.91 -27.56 13.69 55.43 0.76 -26.80 16 20 Si 1.04 24.22 26.24 -169.99 -4.46 19.76 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -5.56 5.52 56.52 0.31 -5.24 16 24 C -0.13 -2.62 4.74 -26.63 -0.13 -2.74 16 25 C 0.10 1.64 6.34 -3.73 -0.02 1.62 16 26 O -0.37 -4.13 10.82 -35.23 -0.38 -4.51 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 37 H 0.10 1.19 7.81 -51.93 -0.41 0.78 16 38 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.51 6.73 -51.93 -0.35 0.16 16 43 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.39 5.07 -51.93 -0.26 1.13 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.01 5.93 -51.93 -0.31 0.70 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -31.64 359.82 -8.90 -40.55 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.48 Total: 1.26 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -1.33 Total: -14.08 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.25 Total: -37.66 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.30 Total: -15.26 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -4.46 Total: 19.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.64 -8.90 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.332 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds