Wall clock time and date at job start Tue Mar 31 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.42310 * 2 1 4 4 C 1.54487 * 110.37231 * 122.31554 * 2 1 3 5 5 C 1.54507 * 104.06371 * 142.80529 * 4 2 1 6 6 C 1.54484 * 104.06288 * 0.02562 * 5 4 2 7 7 H 1.08996 * 110.37346 * 94.95901 * 6 5 4 8 8 C 1.53000 * 110.36989 * 217.18773 * 6 5 4 9 9 C 1.52997 * 109.47188 * 184.99605 * 8 6 5 10 10 C 1.50700 * 109.47413 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99940 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99969 * 180.02562 * 10 9 8 13 13 C 1.46933 * 120.62609 * 179.97438 * 12 10 9 14 14 C 1.53188 * 108.77395 * 233.58365 * 13 12 10 15 15 C 1.53033 * 109.31833 * 305.37043 * 14 13 12 16 16 C 1.50699 * 109.46460 * 181.38825 * 15 14 13 17 17 H 1.08007 * 119.99641 * 354.50657 * 16 15 14 18 18 C 1.37880 * 120.00558 * 174.51237 * 16 15 14 19 19 N 1.31503 * 120.00305 * 163.52002 * 18 16 15 20 20 Si 1.86798 * 119.99390 * 343.51912 * 18 16 15 21 21 H 1.48500 * 109.47199 * 269.99880 * 20 18 16 22 22 H 1.48499 * 109.46918 * 150.00354 * 20 18 16 23 23 H 1.48501 * 109.47625 * 30.00111 * 20 18 16 24 24 C 1.53041 * 109.53958 * 61.36195 * 15 14 13 25 25 C 1.46925 * 120.63295 * 359.97438 * 12 10 9 26 26 O 1.44430 * 104.80350 * 336.01634 * 6 5 4 27 27 H 1.09006 * 109.47021 * 297.68476 * 1 2 3 28 28 H 1.08997 * 109.47086 * 57.68743 * 1 2 3 29 29 H 1.09003 * 109.47279 * 177.68970 * 1 2 3 30 30 H 1.08996 * 110.50866 * 24.16192 * 4 2 1 31 31 H 1.08996 * 110.50741 * 261.45495 * 4 2 1 32 32 H 1.08998 * 110.51312 * 241.35492 * 5 4 2 33 33 H 1.08997 * 110.62551 * 118.70040 * 5 4 2 34 34 H 1.09007 * 109.47368 * 64.99730 * 8 6 5 35 35 H 1.09000 * 109.46920 * 304.99974 * 8 6 5 36 36 H 1.09007 * 109.46864 * 59.99816 * 9 8 6 37 37 H 1.08994 * 109.47454 * 300.00476 * 9 8 6 38 38 H 1.09007 * 109.58134 * 113.80254 * 13 12 10 39 39 H 1.08997 * 109.58658 * 353.37828 * 13 12 10 40 40 H 1.09005 * 109.49829 * 185.41551 * 14 13 12 41 41 H 1.08996 * 109.52451 * 65.34149 * 14 13 12 42 42 H 1.09002 * 109.46026 * 301.35921 * 15 14 13 43 43 H 0.97008 * 120.00207 * 354.80912 * 19 18 16 44 44 H 1.09003 * 109.49128 * 58.58908 * 24 15 14 45 45 H 1.09002 * 109.50040 * 178.68278 * 24 15 14 46 46 H 1.09001 * 109.58670 * 246.19888 * 25 12 10 47 47 H 1.08995 * 109.58233 * 6.63047 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 6 2.0677 -0.7742 1.2239 5 6 3.3177 -1.5059 0.6858 6 6 3.3876 -1.0867 -0.7994 7 1 4.0544 -0.2332 -0.9219 8 6 3.8603 -2.2587 -1.6619 9 6 4.0416 -1.7884 -3.1064 10 6 4.5079 -2.9426 -3.9558 11 8 4.6779 -4.0341 -3.4552 12 7 4.7359 -2.7619 -5.2718 13 6 5.1912 -3.8774 -6.1127 14 6 6.4649 -3.4515 -6.8496 15 6 6.1963 -2.1549 -7.6168 16 6 7.4372 -1.7510 -8.3704 17 1 8.3537 -2.3073 -8.2392 18 6 7.4028 -0.6714 -9.2274 19 7 8.5245 -0.1168 -9.6317 20 14 5.7627 0.0033 -9.8139 21 1 5.3626 -0.6873 -11.0662 22 1 5.8904 1.4602 -10.0714 23 1 4.7311 -0.2265 -8.7707 24 6 5.8145 -1.0472 -6.6322 25 6 4.5338 -1.4457 -5.8928 26 8 2.0331 -0.7229 -1.1444 27 1 -0.3633 0.4775 0.9101 28 1 -0.3633 0.5493 -0.8685 29 1 -0.3634 -1.0268 -0.0414 30 1 1.3275 -1.4921 1.5771 31 1 2.3429 -0.0841 2.0215 32 1 3.1954 -2.5855 0.7730 33 1 4.2119 -1.1796 1.2168 34 1 3.1178 -3.0561 -1.6299 35 1 4.8104 -2.6314 -1.2791 36 1 4.7842 -0.9910 -3.1384 37 1 3.0916 -1.4156 -3.4892 38 1 4.4165 -4.1286 -6.8373 39 1 5.4036 -4.7440 -5.4866 40 1 6.7594 -4.2338 -7.5492 41 1 7.2656 -3.2882 -6.1284 42 1 5.3790 -2.3121 -8.3208 43 1 9.3726 -0.4178 -9.2694 44 1 6.6211 -0.9064 -5.9126 45 1 5.6461 -0.1182 -7.1770 46 1 3.7055 -1.4983 -6.5994 47 1 4.3127 -0.7080 -5.1216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543833095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:27 Heat of formation + Delta-G solvation = -128.187952 kcal Electronic energy + Delta-G solvation = -24398.061038 eV Core-core repulsion = 20964.723473 eV Total energy + Delta-G solvation = -3433.337564 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26752 -40.43259 -38.58958 -35.39264 -34.96927 -33.38950 -33.13060 -32.21765 -31.31371 -28.33304 -27.17412 -24.68684 -24.02800 -23.48574 -22.26139 -21.70621 -21.24534 -19.73673 -19.67363 -18.11564 -17.49224 -17.07699 -16.72820 -16.32929 -15.99122 -15.77174 -15.29603 -14.99238 -14.88714 -14.65618 -14.47580 -14.17196 -14.09406 -14.02544 -13.53429 -13.33531 -13.15132 -13.02751 -12.60547 -12.55256 -12.49353 -12.29284 -12.14929 -12.05506 -11.81201 -11.65539 -11.61831 -11.47684 -11.42886 -11.21272 -10.91142 -10.67922 -10.63562 -10.46071 -9.60609 -8.69160 -6.34293 1.52003 1.57456 1.62952 1.76081 2.06361 2.55720 2.90906 3.09518 3.45893 3.71474 3.78647 3.95508 4.02098 4.05550 4.14119 4.14718 4.22783 4.30317 4.35325 4.42315 4.45927 4.51605 4.54283 4.63047 4.68170 4.72936 4.80188 4.81054 4.84766 4.95498 4.97169 4.97971 5.09536 5.12851 5.15883 5.17732 5.22102 5.27221 5.32869 5.41572 5.59087 5.76373 6.03521 6.03957 6.13627 6.47396 6.58504 7.16695 7.44282 8.65721 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.003202 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.572612 B = 8741.856558 C = 9391.734486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.153 4.153 6 C 0.075 3.925 7 H 0.081 0.919 8 C -0.090 4.090 9 C -0.130 4.130 10 C 0.508 3.492 11 O -0.590 6.590 12 N -0.608 5.608 13 C 0.116 3.884 14 C -0.107 4.107 15 C 0.018 3.982 16 C -0.602 4.602 17 H 0.007 0.993 18 C -0.024 4.024 19 N -0.945 5.945 20 Si 1.084 2.916 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.222 1.222 24 C -0.127 4.127 25 C 0.107 3.893 26 O -0.390 6.390 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.249 0.751 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 1.924 21.275 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.003 3.997 3 H 0.093 0.907 4 C -0.185 4.185 5 C -0.190 4.190 6 C 0.018 3.982 7 H 0.099 0.901 8 C -0.128 4.128 9 C -0.170 4.170 10 C 0.299 3.701 11 O -0.472 6.472 12 N -0.340 5.340 13 C -0.006 4.006 14 C -0.146 4.146 15 C -0.001 4.001 16 C -0.639 4.639 17 H 0.026 0.974 18 C -0.221 4.221 19 N -0.581 5.581 20 Si 0.905 3.095 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.144 1.144 24 C -0.166 4.166 25 C -0.015 4.015 26 O -0.311 6.311 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.356 2.414 20.349 27.511 hybrid contribution 2.096 -1.368 0.590 2.572 sum -16.260 1.046 20.940 26.532 Atomic orbital electron populations 1.21814 0.92652 1.02609 1.03157 1.23172 0.95920 0.95709 0.84930 0.90677 1.23000 0.97284 0.99918 0.98281 1.22995 0.99551 1.01549 0.94939 1.23058 0.84549 0.96636 0.93988 0.90131 1.21328 1.01834 0.96932 0.92686 1.21694 1.04201 0.96110 0.94977 1.21328 0.76300 0.90535 0.81950 1.90624 1.54922 1.28724 1.72926 1.48288 1.65555 1.11854 1.08310 1.21584 0.96125 0.89395 0.93546 1.21714 0.96192 0.98643 0.98003 1.19006 0.95362 0.92280 0.93501 1.22259 0.96804 1.15750 1.29113 0.97416 1.27377 1.06355 0.94142 0.94178 1.70945 0.99024 1.42120 1.45973 0.83664 0.72506 0.75611 0.77762 1.20569 1.21622 1.14433 1.22226 0.96240 0.99751 0.98378 1.22012 0.97835 0.83297 0.98355 1.89136 1.27539 1.74926 1.39477 0.89339 0.92267 0.92582 0.90505 0.88922 0.91085 0.89128 0.92083 0.90415 0.87324 0.87150 0.90206 0.90484 0.92213 0.94932 0.94744 0.94197 0.94113 0.91469 0.89837 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.52 71.98 0.69 -1.08 16 2 C 0.06 0.86 3.92 31.10 0.12 0.98 16 3 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.15 -1.73 6.63 31.61 0.21 -1.52 16 5 C -0.15 -2.15 6.63 31.61 0.21 -1.94 16 6 C 0.08 1.32 3.25 31.10 0.10 1.42 16 7 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 8 C -0.09 -1.95 4.13 30.59 0.13 -1.83 16 9 C -0.13 -2.96 3.98 29.85 0.12 -2.84 16 10 C 0.51 15.85 7.70 87.66 0.67 16.53 16 11 O -0.59 -22.34 15.40 -3.03 -0.05 -22.38 16 12 N -0.61 -19.24 2.97 -818.96 -2.43 -21.67 16 13 C 0.12 3.93 6.43 86.36 0.56 4.48 16 14 C -0.11 -4.32 5.30 30.67 0.16 -4.16 16 15 C 0.02 0.78 1.61 -11.52 -0.02 0.76 16 16 C -0.60 -33.71 8.83 25.60 0.23 -33.49 16 17 H 0.01 0.47 7.99 -2.91 -0.02 0.45 16 18 C -0.02 -1.35 5.34 84.66 0.45 -0.90 16 19 N -0.94 -59.20 13.69 21.45 0.29 -58.90 16 20 Si 1.08 47.22 26.24 68.60 1.80 49.02 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.22 -7.85 5.52 99.48 0.55 -7.30 16 24 C -0.13 -4.83 4.74 30.66 0.15 -4.68 16 25 C 0.11 3.04 6.34 86.35 0.55 3.59 16 26 O -0.39 -7.91 10.82 -148.98 -1.61 -9.52 16 27 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.88 7.87 -2.39 -0.02 0.86 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.09 7.87 -2.39 -0.02 1.07 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.53 8.10 -2.38 -0.02 1.51 16 35 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 36 H 0.11 2.14 7.69 -2.38 -0.02 2.12 16 37 H 0.11 2.28 7.81 -2.39 -0.02 2.26 16 38 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.08 2.69 7.00 -2.39 -0.02 2.67 16 40 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.03 1.46 6.73 -2.39 -0.02 1.44 16 43 H 0.25 16.00 8.73 -92.70 -0.81 15.19 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 2.55 5.07 -2.39 -0.01 2.54 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.11 2.40 5.93 -2.39 -0.01 2.38 16 Total: -1.00 -71.43 359.82 3.04 -68.39 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.73 Total: 19.74 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 4.32 Total: -24.67 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.14 Total: -80.58 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.66 Total: -31.90 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.80 Total: 49.02 kcal Total: -71.43 3.04 -68.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.802 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds