Wall clock time and date at job start Tue Mar 31 2020 07:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00304 * 2 1 4 4 C 1.50700 * 119.99824 * 179.72514 * 2 1 3 5 5 H 1.08995 * 109.47304 * 355.27526 * 4 2 1 6 6 C 1.53002 * 109.47213 * 115.27618 * 4 2 1 7 7 C 1.50697 * 109.47130 * 184.99714 * 6 4 2 8 8 O 1.21283 * 120.00379 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99986 * 179.97438 * 7 6 4 10 10 C 1.46922 * 120.63043 * 359.72410 * 9 7 6 11 11 C 1.52761 * 109.00982 * 233.58239 * 10 9 7 12 12 C 1.53040 * 109.38039 * 305.58863 * 11 10 9 13 13 C 1.50701 * 109.44719 * 181.25026 * 12 11 10 14 14 H 1.08004 * 120.00193 * 239.93705 * 13 12 11 15 15 C 1.37877 * 119.99813 * 59.93757 * 13 12 11 16 16 N 1.31516 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47045 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47079 * 120.00317 * 17 15 13 20 20 H 1.48497 * 109.47096 * 240.00370 * 17 15 13 21 21 C 1.53041 * 109.54115 * 61.24020 * 12 11 10 22 22 C 1.46928 * 120.62890 * 180.02562 * 9 7 6 23 23 O 1.42903 * 109.46820 * 235.27243 * 4 2 1 24 24 C 1.42904 * 113.99828 * 90.00334 * 23 4 2 25 25 C 1.53000 * 109.47073 * 179.97438 * 24 23 4 26 26 H 1.08004 * 119.99740 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47015 * 269.72750 * 3 2 1 29 29 H 1.09000 * 109.46646 * 29.71903 * 3 2 1 30 30 H 1.09000 * 109.47248 * 149.72620 * 3 2 1 31 31 H 1.08997 * 109.47201 * 304.99794 * 6 4 2 32 32 H 1.09003 * 109.46932 * 64.99835 * 6 4 2 33 33 H 1.09001 * 109.58566 * 353.42152 * 10 9 7 34 34 H 1.09002 * 109.58801 * 113.84380 * 10 9 7 35 35 H 1.08991 * 109.56583 * 185.54940 * 11 10 9 36 36 H 1.08998 * 109.38341 * 65.51141 * 11 10 9 37 37 H 1.08996 * 109.45961 * 301.21519 * 12 11 10 38 38 H 0.97004 * 120.00006 * 179.97438 * 16 15 13 39 39 H 1.08994 * 109.49991 * 178.68336 * 21 12 11 40 40 H 1.09001 * 109.52072 * 58.59636 * 21 12 11 41 41 H 1.09004 * 109.58575 * 246.15867 * 22 9 7 42 42 H 1.08994 * 109.58723 * 6.44017 * 22 9 7 43 43 H 1.08995 * 109.46818 * 299.99799 * 24 23 4 44 44 H 1.08996 * 109.47321 * 59.99615 * 24 23 4 45 45 H 1.08995 * 109.47437 * 299.99791 * 25 24 23 46 46 H 1.08996 * 109.47059 * 59.99824 * 25 24 23 47 47 H 1.08997 * 109.46882 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0063 5 1 1.3581 -2.1314 0.0949 6 6 2.8518 -1.4451 -1.2975 7 6 3.5065 -2.8016 -1.3454 8 8 3.3568 -3.5801 -0.4275 9 7 4.2575 -3.1503 -2.4089 10 6 4.4422 -2.2209 -3.5318 11 6 4.0550 -2.9263 -4.8303 12 6 4.8471 -4.2298 -4.9559 13 6 4.4889 -4.9117 -6.2512 14 1 4.0605 -5.9030 -6.2391 15 6 4.7082 -4.2700 -7.4517 16 7 5.2305 -3.0631 -7.4664 17 14 4.2650 -5.1155 -9.0574 18 1 3.6980 -6.4576 -8.7700 19 1 3.2602 -4.2997 -9.7855 20 1 5.4839 -5.2612 -9.8930 21 6 4.5052 -5.1515 -3.7830 22 6 4.9016 -4.4694 -2.4703 23 8 2.9662 -1.3285 1.1137 24 6 2.4042 -1.8710 2.3104 25 6 3.4540 -1.8473 3.4232 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 2.2494 1.6173 -1.0277 29 1 1.4723 2.0660 0.5095 30 1 3.0138 1.1760 0.5181 31 1 2.1746 -1.3384 -2.1449 32 1 3.6172 -0.6705 -1.3442 33 1 3.8082 -1.3457 -3.3898 34 1 5.4867 -1.9135 -3.5837 35 1 4.2813 -2.2799 -5.6783 36 1 2.9881 -3.1488 -4.8169 37 1 5.9143 -4.0087 -4.9449 38 1 5.3851 -2.6117 -8.3110 39 1 5.0518 -6.0889 -3.8856 40 1 3.4340 -5.3535 -3.7787 41 1 5.9844 -4.3494 -2.4336 42 1 4.5725 -5.0763 -1.6269 43 1 1.5429 -1.2742 2.6102 44 1 2.0892 -2.8988 2.1304 45 1 4.3151 -2.4443 3.1232 46 1 3.7694 -0.8196 3.6032 47 1 3.0252 -2.2606 4.3360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543834651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:01 Heat of formation + Delta-G solvation = -83.038322 kcal Electronic energy + Delta-G solvation = -24800.534264 eV Core-core repulsion = 21369.154535 eV Total energy + Delta-G solvation = -3431.379730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88770 -38.41484 -36.64129 -35.21411 -33.48715 -31.95237 -31.19346 -30.26516 -29.54981 -27.47848 -26.24132 -24.20971 -22.74489 -22.68247 -22.07418 -19.78611 -18.92311 -18.17621 -16.93585 -16.76774 -16.17300 -15.64458 -15.47614 -14.87522 -14.56670 -14.40409 -14.08046 -13.78503 -13.33655 -13.15101 -13.11609 -12.94897 -12.60737 -12.51558 -12.31883 -12.20253 -11.79403 -11.74690 -11.68911 -11.45272 -11.29053 -11.08942 -10.97069 -10.77270 -10.61388 -10.37498 -10.11240 -9.66097 -9.49692 -9.40697 -9.21641 -9.16394 -8.90923 -8.39133 -7.95429 -6.04511 -4.10464 1.99722 3.07905 3.26120 3.34774 3.38903 3.50485 3.77268 4.39855 4.56798 4.80735 4.99095 5.03456 5.11148 5.24769 5.25864 5.36099 5.41377 5.44359 5.49532 5.57672 5.65630 5.73780 5.78163 5.84757 5.88287 5.89794 5.96076 5.98792 6.09693 6.11384 6.18040 6.31944 6.40991 6.47672 6.61752 6.67152 6.91169 7.04654 7.15910 7.27360 7.32201 7.65851 7.91153 7.98264 8.03525 8.39278 8.64567 8.93249 9.54756 11.00993 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.003452 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.012418 B = 8109.797437 C = 8790.191793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C -0.116 4.116 4 C 0.144 3.856 5 H 0.071 0.929 6 C -0.135 4.135 7 C 0.516 3.484 8 O -0.553 6.553 9 N -0.602 5.602 10 C 0.104 3.896 11 C -0.125 4.125 12 C 0.048 3.952 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.123 4.123 22 C 0.113 3.887 23 O -0.366 6.366 24 C 0.063 3.937 25 C -0.148 4.148 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 7.754 15.313 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.144 4.144 3 C -0.173 4.173 4 C 0.085 3.915 5 H 0.089 0.911 6 C -0.174 4.174 7 C 0.303 3.697 8 O -0.432 6.432 9 N -0.335 5.335 10 C -0.019 4.019 11 C -0.163 4.163 12 C 0.030 3.970 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.161 4.161 22 C -0.009 4.009 23 O -0.285 6.285 24 C -0.013 4.013 25 C -0.205 4.205 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.743 7.540 15.650 18.296 hybrid contribution -0.530 -0.400 -1.145 1.324 sum -6.273 7.140 14.504 17.341 Atomic orbital electron populations 1.23757 0.95088 1.02028 1.01678 1.22327 0.95512 0.96793 0.99773 1.20778 1.00721 0.93655 1.02147 1.20736 0.90923 0.93407 0.86388 0.91053 1.21792 1.01215 0.96683 0.97749 1.20352 0.78867 0.88654 0.81780 1.90619 1.62414 1.53246 1.36925 1.48227 1.49360 1.16993 1.18898 1.21946 1.00875 0.91575 0.87462 1.21944 0.98978 1.00590 0.94812 1.18634 0.95786 0.91003 0.91594 1.21252 1.41167 1.01812 0.90664 0.92677 1.24961 0.95051 0.94953 0.99031 1.69846 1.44456 1.12770 1.26015 0.86566 0.78099 0.79747 0.83772 1.19845 1.21069 1.21051 1.21995 1.00546 0.99157 0.94416 1.21648 0.96318 0.83430 0.99541 1.87898 1.38358 1.83257 1.18964 1.22385 0.95964 0.97594 0.85379 1.21701 0.99631 1.02474 0.96717 0.88149 0.88457 0.91323 0.92218 0.91047 0.87738 0.88192 0.91522 0.91989 0.87743 0.94329 0.95454 0.93045 0.92231 0.93053 0.92393 0.90446 0.94176 0.93013 0.91753 0.92291 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 13.91 29.02 0.40 -1.42 16 2 C -0.14 -1.57 5.05 -101.06 -0.51 -2.08 16 3 C -0.12 -1.12 9.73 36.01 0.35 -0.77 16 4 C 0.14 1.90 1.87 -27.88 -0.05 1.84 16 5 H 0.07 1.00 7.25 -51.93 -0.38 0.62 16 6 C -0.13 -1.86 3.60 -27.88 -0.10 -1.96 16 7 C 0.52 9.05 7.58 -10.99 -0.08 8.97 16 8 O -0.55 -11.06 14.83 -8.85 -0.13 -11.19 16 9 N -0.60 -10.92 2.98 -173.05 -0.52 -11.43 16 10 C 0.10 1.83 6.31 -3.93 -0.02 1.81 16 11 C -0.12 -2.71 5.14 -26.83 -0.14 -2.85 16 12 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 13 C -0.51 -13.56 8.56 -34.44 -0.29 -13.85 16 14 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -24.25 11.31 55.43 0.63 -23.63 16 17 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.12 -2.54 5.30 -26.63 -0.14 -2.68 16 22 C 0.11 2.11 6.43 -3.73 -0.02 2.08 16 23 O -0.37 -5.23 8.76 -49.63 -0.43 -5.67 16 24 C 0.06 0.77 6.46 37.16 0.24 1.01 16 25 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 26 H 0.10 0.82 8.04 -52.48 -0.42 0.40 16 27 H 0.10 0.91 7.84 -52.49 -0.41 0.50 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 30 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 31 H 0.10 1.31 7.68 -51.93 -0.40 0.91 16 32 H 0.10 1.27 7.85 -51.93 -0.41 0.87 16 33 H 0.07 0.99 5.93 -51.93 -0.31 0.69 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -29.26 373.41 -8.56 -37.82 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.43 Total: 1.31 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.28 Total: -8.56 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.11 Total: -35.06 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.57 Total: -16.86 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.26 -8.56 -37.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543834651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.222 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds