Wall clock time and date at job start Tue Mar 31 2020 07:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00304 * 2 1 4 4 C 1.50700 * 119.99824 * 179.72514 * 2 1 3 5 5 H 1.08995 * 109.47304 * 355.27526 * 4 2 1 6 6 C 1.53002 * 109.47213 * 115.27618 * 4 2 1 7 7 C 1.50697 * 109.47130 * 184.99714 * 6 4 2 8 8 O 1.21283 * 120.00379 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99986 * 179.97438 * 7 6 4 10 10 C 1.46922 * 120.63043 * 359.72410 * 9 7 6 11 11 C 1.52761 * 109.00982 * 233.58239 * 10 9 7 12 12 C 1.53040 * 109.38039 * 305.58863 * 11 10 9 13 13 C 1.50701 * 109.44719 * 181.25026 * 12 11 10 14 14 H 1.08004 * 120.00193 * 239.93705 * 13 12 11 15 15 C 1.37877 * 119.99813 * 59.93757 * 13 12 11 16 16 N 1.31516 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47045 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47079 * 120.00317 * 17 15 13 20 20 H 1.48497 * 109.47096 * 240.00370 * 17 15 13 21 21 C 1.53041 * 109.54115 * 61.24020 * 12 11 10 22 22 C 1.46928 * 120.62890 * 180.02562 * 9 7 6 23 23 O 1.42903 * 109.46820 * 235.27243 * 4 2 1 24 24 C 1.42904 * 113.99828 * 90.00334 * 23 4 2 25 25 C 1.53000 * 109.47073 * 179.97438 * 24 23 4 26 26 H 1.08004 * 119.99740 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47015 * 269.72750 * 3 2 1 29 29 H 1.09000 * 109.46646 * 29.71903 * 3 2 1 30 30 H 1.09000 * 109.47248 * 149.72620 * 3 2 1 31 31 H 1.08997 * 109.47201 * 304.99794 * 6 4 2 32 32 H 1.09003 * 109.46932 * 64.99835 * 6 4 2 33 33 H 1.09001 * 109.58566 * 353.42152 * 10 9 7 34 34 H 1.09002 * 109.58801 * 113.84380 * 10 9 7 35 35 H 1.08991 * 109.56583 * 185.54940 * 11 10 9 36 36 H 1.08998 * 109.38341 * 65.51141 * 11 10 9 37 37 H 1.08996 * 109.45961 * 301.21519 * 12 11 10 38 38 H 0.97004 * 120.00006 * 179.97438 * 16 15 13 39 39 H 1.08994 * 109.49991 * 178.68336 * 21 12 11 40 40 H 1.09001 * 109.52072 * 58.59636 * 21 12 11 41 41 H 1.09004 * 109.58575 * 246.15867 * 22 9 7 42 42 H 1.08994 * 109.58723 * 6.44017 * 22 9 7 43 43 H 1.08995 * 109.46818 * 299.99799 * 24 23 4 44 44 H 1.08996 * 109.47321 * 59.99615 * 24 23 4 45 45 H 1.08995 * 109.47437 * 299.99791 * 25 24 23 46 46 H 1.08996 * 109.47059 * 59.99824 * 25 24 23 47 47 H 1.08997 * 109.46882 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0063 5 1 1.3581 -2.1314 0.0949 6 6 2.8518 -1.4451 -1.2975 7 6 3.5065 -2.8016 -1.3454 8 8 3.3568 -3.5801 -0.4275 9 7 4.2575 -3.1503 -2.4089 10 6 4.4422 -2.2209 -3.5318 11 6 4.0550 -2.9263 -4.8303 12 6 4.8471 -4.2298 -4.9559 13 6 4.4889 -4.9117 -6.2512 14 1 4.0605 -5.9030 -6.2391 15 6 4.7082 -4.2700 -7.4517 16 7 5.2305 -3.0631 -7.4664 17 14 4.2650 -5.1155 -9.0574 18 1 3.6980 -6.4576 -8.7700 19 1 3.2602 -4.2997 -9.7855 20 1 5.4839 -5.2612 -9.8930 21 6 4.5052 -5.1515 -3.7830 22 6 4.9016 -4.4694 -2.4703 23 8 2.9662 -1.3285 1.1137 24 6 2.4042 -1.8710 2.3104 25 6 3.4540 -1.8473 3.4232 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 2.2494 1.6173 -1.0277 29 1 1.4723 2.0660 0.5095 30 1 3.0138 1.1760 0.5181 31 1 2.1746 -1.3384 -2.1449 32 1 3.6172 -0.6705 -1.3442 33 1 3.8082 -1.3457 -3.3898 34 1 5.4867 -1.9135 -3.5837 35 1 4.2813 -2.2799 -5.6783 36 1 2.9881 -3.1488 -4.8169 37 1 5.9143 -4.0087 -4.9449 38 1 5.3851 -2.6117 -8.3110 39 1 5.0518 -6.0889 -3.8856 40 1 3.4340 -5.3535 -3.7787 41 1 5.9844 -4.3494 -2.4336 42 1 4.5725 -5.0763 -1.6269 43 1 1.5429 -1.2742 2.6102 44 1 2.0892 -2.8988 2.1304 45 1 4.3151 -2.4443 3.1232 46 1 3.7694 -0.8196 3.6032 47 1 3.0252 -2.2606 4.3360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543834651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:01 Heat of formation + Delta-G solvation = -97.453052 kcal Electronic energy + Delta-G solvation = -24801.159334 eV Core-core repulsion = 21369.154535 eV Total energy + Delta-G solvation = -3432.004799 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24838 -39.54825 -38.20317 -36.08068 -35.30072 -33.36774 -32.48254 -31.78838 -30.76120 -28.23074 -27.99368 -25.53630 -24.30677 -23.64164 -23.61821 -21.40779 -19.85036 -19.66061 -18.53499 -17.94255 -17.69460 -16.93777 -16.57774 -16.47404 -16.21694 -15.47090 -15.13798 -14.87462 -14.79534 -14.57076 -14.50769 -14.10922 -14.05093 -13.86766 -13.39222 -13.30142 -13.10689 -13.10014 -12.84802 -12.76715 -12.53674 -12.46028 -12.42372 -12.14517 -11.99598 -11.89076 -11.77296 -11.46962 -10.99986 -10.94654 -10.64331 -10.45355 -10.38460 -10.06908 -9.50861 -8.07603 -6.20636 1.21265 1.40329 1.43808 1.53639 1.70135 2.13251 2.44426 2.79790 3.18923 3.49129 3.90159 3.94473 4.01280 4.17881 4.22652 4.27611 4.32195 4.39083 4.44097 4.50942 4.51743 4.53506 4.59858 4.73596 4.76283 4.82603 4.87108 4.88481 4.96000 4.99300 5.02542 5.08128 5.19477 5.20095 5.25912 5.26689 5.44168 5.56951 5.64979 5.66787 5.84205 5.99348 6.14723 6.35573 6.39884 6.55969 6.88725 7.23743 7.47055 8.95957 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.003452 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.012418 B = 8109.797437 C = 8790.191793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.157 4.157 3 C -0.113 4.113 4 C 0.144 3.856 5 H 0.057 0.943 6 C -0.130 4.130 7 C 0.512 3.488 8 O -0.580 6.580 9 N -0.607 5.607 10 C 0.114 3.886 11 C -0.115 4.115 12 C 0.045 3.955 13 C -0.534 4.534 14 H 0.046 0.954 15 C 0.018 3.982 16 N -0.911 5.911 17 Si 0.948 3.052 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.281 1.281 21 C -0.112 4.112 22 C 0.118 3.882 23 O -0.384 6.384 24 C 0.060 3.940 25 C -0.144 4.144 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.003 0.997 38 H 0.262 0.738 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 9.122 15.840 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.170 4.170 4 C 0.086 3.914 5 H 0.075 0.925 6 C -0.169 4.169 7 C 0.302 3.698 8 O -0.460 6.460 9 N -0.339 5.339 10 C -0.008 4.008 11 C -0.154 4.154 12 C 0.027 3.973 13 C -0.572 4.572 14 H 0.064 0.936 15 C -0.181 4.181 16 N -0.550 5.550 17 Si 0.775 3.225 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.151 4.151 22 C -0.005 4.005 23 O -0.304 6.304 24 C -0.016 4.016 25 C -0.201 4.201 26 H 0.138 0.862 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.686 8.914 16.182 19.647 hybrid contribution -0.257 -0.874 -1.293 1.582 sum -6.943 8.040 14.888 18.289 Atomic orbital electron populations 1.23946 0.94748 1.02971 0.99750 1.22235 0.95813 0.96125 1.01522 1.20767 1.00242 0.93252 1.02693 1.20731 0.90498 0.94356 0.85820 0.92532 1.21857 1.01734 0.94374 0.98957 1.21027 0.78127 0.89791 0.80901 1.90607 1.63144 1.54471 1.37826 1.48289 1.49593 1.16725 1.19303 1.21832 1.01764 0.91938 0.85243 1.21713 0.97946 0.99452 0.96289 1.18608 0.94474 0.92494 0.91758 1.21563 1.41530 1.01784 0.92364 0.93618 1.25619 0.95043 0.95588 1.01808 1.69949 1.44778 1.13549 1.26732 0.85657 0.77876 0.78772 0.80229 1.19799 1.20497 1.20712 1.21836 0.99837 0.98916 0.94472 1.21516 0.96864 0.83961 0.98116 1.87866 1.39379 1.83420 1.19734 1.22491 0.97046 0.96813 0.85272 1.21704 0.98643 1.02773 0.96960 0.86225 0.88495 0.90566 0.90839 0.92105 0.86117 0.86662 0.88047 0.91734 0.90073 0.95220 0.97933 0.92898 0.92027 0.94023 0.91611 0.90412 0.92646 0.94711 0.93442 0.91567 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 13.91 67.79 0.94 -2.03 16 2 C -0.16 -3.06 5.05 -16.48 -0.08 -3.14 16 3 C -0.11 -1.87 9.73 71.24 0.69 -1.18 16 4 C 0.14 3.61 1.87 29.85 0.06 3.67 16 5 H 0.06 1.55 7.25 -2.39 -0.02 1.54 16 6 C -0.13 -3.33 3.60 29.85 0.11 -3.23 16 7 C 0.51 17.45 7.58 87.66 0.66 18.11 16 8 O -0.58 -23.06 14.83 10.73 0.16 -22.90 16 9 N -0.61 -21.43 2.98 -819.81 -2.44 -23.87 16 10 C 0.11 3.90 6.31 86.22 0.54 4.44 16 11 C -0.12 -5.02 5.14 30.53 0.16 -4.86 16 12 C 0.05 2.17 2.07 -11.51 -0.02 2.15 16 13 C -0.53 -28.80 8.56 25.60 0.22 -28.58 16 14 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 15 C 0.02 0.99 5.30 84.65 0.45 1.43 16 16 N -0.91 -49.81 11.31 21.45 0.24 -49.57 16 17 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 C -0.11 -4.68 5.30 30.66 0.16 -4.52 16 22 C 0.12 4.38 6.43 86.35 0.56 4.93 16 23 O -0.38 -10.65 8.76 -135.21 -1.18 -11.84 16 24 C 0.06 1.42 6.46 71.98 0.46 1.89 16 25 C -0.14 -2.84 10.28 71.98 0.74 -2.10 16 26 H 0.12 1.55 8.04 -2.91 -0.02 1.53 16 27 H 0.10 1.62 7.84 -2.91 -0.02 1.60 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.00 8.05 -2.39 -0.02 0.98 16 30 H 0.06 1.14 7.72 -2.39 -0.02 1.12 16 31 H 0.12 2.72 7.68 -2.39 -0.02 2.70 16 32 H 0.12 2.64 7.85 -2.39 -0.02 2.62 16 33 H 0.10 2.76 5.93 -2.39 -0.01 2.74 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 3.95 6.03 -2.39 -0.01 3.93 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.08 2.89 7.00 -2.39 -0.02 2.88 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -62.91 373.41 5.36 -57.55 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.91 Total: 18.98 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.65 Total: -13.02 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -2.20 Total: -73.44 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.03 Total: -34.74 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -62.91 5.36 -57.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543834651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.900 kcal (2) G-P(sol) polarization free energy of solvation -62.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds