Wall clock time and date at job start Tue Mar 31 2020 06:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20759 * 120.00088 * 2 1 4 4 C 1.50703 * 119.99805 * 180.02562 * 2 1 3 5 5 H 1.09002 * 112.90607 * 292.28551 * 4 2 1 6 6 C 1.54055 * 113.60819 * 161.03224 * 4 2 1 7 7 C 1.53790 * 86.98167 * 270.87812 * 6 4 2 8 8 H 1.09001 * 113.61302 * 219.98130 * 7 6 4 9 9 C 1.50699 * 113.61087 * 89.16458 * 7 6 4 10 10 O 1.21290 * 119.99798 * 1.10509 * 9 7 6 11 11 N 1.34775 * 120.00057 * 181.09896 * 9 7 6 12 12 C 1.46494 * 119.99842 * 354.39612 * 11 9 7 13 13 C 1.50700 * 109.47023 * 269.99115 * 12 11 9 14 14 H 1.07991 * 119.99935 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99878 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99702 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00054 * 0.02562 * 15 13 12 18 18 H 1.48509 * 109.47073 * 89.99831 * 17 15 13 19 19 H 1.48495 * 109.47106 * 209.99348 * 17 15 13 20 20 H 1.48492 * 109.47302 * 330.00047 * 17 15 13 21 21 C 1.46506 * 119.99819 * 174.38637 * 11 9 7 22 22 C 1.52999 * 109.46683 * 64.29082 * 21 11 9 23 23 C 1.52998 * 109.47454 * 304.29000 * 21 11 9 24 24 C 1.53776 * 113.61573 * 63.53811 * 4 2 1 25 25 C 1.52998 * 113.61540 * 334.56581 * 24 4 2 26 26 C 1.53001 * 113.61308 * 203.66119 * 24 4 2 27 27 H 1.09002 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46897 * 299.99240 * 1 2 3 29 29 H 1.09002 * 109.46994 * 59.99463 * 1 2 3 30 30 H 1.09005 * 113.60765 * 156.38038 * 6 4 2 31 31 H 1.08997 * 113.70043 * 25.39698 * 6 4 2 32 32 H 1.09002 * 109.47297 * 29.99425 * 12 11 9 33 33 H 1.09002 * 109.47359 * 149.99408 * 12 11 9 34 34 H 0.96996 * 119.99930 * 180.02562 * 16 15 13 35 35 H 1.09006 * 109.46565 * 184.28735 * 21 11 9 36 36 H 1.08996 * 109.47235 * 294.83492 * 22 21 11 37 37 H 1.08999 * 109.47173 * 54.84114 * 22 21 11 38 38 H 1.09007 * 109.46780 * 174.83761 * 22 21 11 39 39 H 1.08994 * 109.46937 * 185.35086 * 23 21 11 40 40 H 1.09006 * 109.46793 * 305.35083 * 23 21 11 41 41 H 1.09001 * 109.47163 * 65.34499 * 23 21 11 42 42 H 1.08997 * 109.47398 * 163.92624 * 25 24 4 43 43 H 1.08997 * 109.47409 * 283.92718 * 25 24 4 44 44 H 1.09003 * 109.47136 * 43.92492 * 25 24 4 45 45 H 1.08997 * 109.47512 * 322.50724 * 26 24 4 46 46 H 1.09003 * 109.46597 * 82.50450 * 26 24 4 47 47 H 1.08994 * 109.47114 * 202.49988 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 2.1429 -1.8634 0.9282 6 6 3.7251 -1.1718 -0.4594 7 6 3.2128 -1.4046 -1.8906 8 1 3.8632 -2.0428 -2.4888 9 6 2.8192 -0.1371 -2.6044 10 8 2.9417 0.9345 -2.0495 11 7 2.3313 -0.1942 -3.8595 12 6 2.2979 -1.4721 -4.5749 13 6 3.5852 -1.6549 -5.3369 14 1 4.3516 -0.8954 -5.2923 15 6 3.7848 -2.7924 -6.0901 16 7 4.9084 -2.9522 -6.7547 17 14 2.4594 -4.1065 -6.1666 18 1 1.5414 -3.8184 -7.2979 19 1 3.0908 -5.4353 -6.3678 20 1 1.6921 -4.1103 -4.8953 21 6 1.8341 1.0218 -4.5081 22 6 2.9881 2.0091 -4.6934 23 6 0.7522 1.6600 -3.6346 24 6 2.0247 -2.1520 -1.2623 25 6 0.6883 -1.8673 -1.9507 26 6 2.2813 -3.6460 -1.0545 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.3718 -1.9687 -0.0921 31 1 4.1448 -0.1783 -0.3019 32 1 2.1804 -2.2861 -3.8595 33 1 1.4596 -1.4767 -5.2715 34 1 5.0487 -3.7522 -7.2849 35 1 1.4130 0.7683 -5.4810 36 1 3.3494 2.3331 -3.7174 37 1 3.7980 1.5234 -5.2378 38 1 2.6390 2.8743 -5.2571 39 1 0.3160 2.5098 -4.1595 40 1 -0.0248 0.9251 -3.4239 41 1 1.1947 1.9994 -2.6981 42 1 0.7072 -2.2724 -2.9624 43 1 -0.1180 -2.3360 -1.3867 44 1 0.5237 -0.7906 -1.9934 45 1 3.1364 -3.7791 -0.3918 46 1 1.4004 -4.1071 -0.6080 47 1 2.4898 -4.1159 -2.0156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547706855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:59 Heat of formation + Delta-G solvation = -46.026624 kcal Electronic energy + Delta-G solvation = -27220.904378 eV Core-core repulsion = 23791.129596 eV Total energy + Delta-G solvation = -3429.774782 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33445 -38.60114 -37.27018 -35.31604 -33.05280 -31.62931 -31.13262 -30.01536 -27.66525 -27.10694 -26.56447 -26.21068 -23.24306 -22.20168 -21.50292 -20.27026 -18.37659 -17.06484 -16.91572 -16.44969 -15.69415 -15.38391 -15.18809 -14.81772 -14.44610 -13.96959 -13.79971 -13.69287 -13.36968 -12.98908 -12.79572 -12.60728 -12.48949 -12.38058 -12.22181 -11.99178 -11.91072 -11.77231 -11.56524 -11.36859 -11.24043 -11.00839 -10.90745 -10.80257 -10.73867 -10.61602 -10.26681 -10.17539 -9.84625 -9.79376 -9.48255 -9.12754 -8.73497 -8.61567 -7.59620 -6.20026 -4.20568 2.41126 3.15351 3.21903 3.24732 3.41159 3.86190 4.25976 4.29179 4.56630 4.72383 4.98577 5.01546 5.10302 5.25319 5.34219 5.41127 5.47658 5.62254 5.66077 5.69791 5.70538 5.79912 5.81239 5.85024 5.98163 5.98919 6.10154 6.12408 6.19707 6.20759 6.24324 6.31203 6.35979 6.48588 6.53470 6.53886 6.58073 6.64093 6.72803 6.77686 6.96241 7.47620 7.54298 7.99330 8.23619 8.49361 8.87673 9.11426 9.40081 10.92910 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.007554 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.010669 B = 3705.837935 C = 4542.446887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.355 3.645 3 O -0.405 6.405 4 C -0.158 4.158 5 H 0.100 0.900 6 C -0.111 4.111 7 C -0.129 4.129 8 H 0.112 0.888 9 C 0.530 3.470 10 O -0.533 6.533 11 N -0.587 5.587 12 C 0.206 3.794 13 C -0.537 4.537 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.892 5.892 17 Si 0.868 3.132 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.262 1.262 21 C 0.151 3.849 22 C -0.162 4.162 23 C -0.168 4.168 24 C -0.051 4.051 25 C -0.161 4.161 26 C -0.128 4.128 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.023 0.977 34 H 0.265 0.735 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 0.066 11.346 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.226 3.774 3 O -0.274 6.274 4 C -0.177 4.177 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.151 4.151 8 H 0.130 0.870 9 C 0.318 3.682 10 O -0.412 6.412 11 N -0.319 5.319 12 C 0.084 3.916 13 C -0.575 4.575 14 H 0.096 0.904 15 C -0.128 4.128 16 N -0.530 5.530 17 Si 0.695 3.305 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.187 1.187 21 C 0.048 3.952 22 C -0.221 4.221 23 C -0.226 4.226 24 C -0.052 4.052 25 C -0.218 4.218 26 C -0.185 4.185 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.565 1.081 11.485 14.985 hybrid contribution -0.603 -1.155 -0.547 1.413 sum -10.167 -0.075 10.938 14.933 Atomic orbital electron populations 1.22449 0.95520 1.04094 1.03742 1.23802 0.91087 0.89671 0.72805 1.90479 1.71242 1.34019 1.31639 1.23128 0.98297 0.96671 0.99555 0.88176 1.22753 0.94399 1.03693 0.94018 1.22616 0.99019 0.96613 0.96815 0.86975 1.19750 0.77048 0.89901 0.81523 1.90712 1.53914 1.29972 1.66571 1.47923 1.60904 1.09490 1.13536 1.19930 0.97701 0.81464 0.92479 1.21451 1.01527 1.06016 1.28540 0.90425 1.24885 0.95285 0.97772 0.94864 1.69897 1.24569 1.28033 1.30497 0.86977 0.82444 0.81858 0.79267 1.20048 1.20937 1.18680 1.20786 0.93786 0.85168 0.95493 1.22146 0.98962 0.98203 1.02740 1.22251 0.98120 0.99983 1.02235 1.21571 0.94914 0.94937 0.93744 1.22368 0.95567 1.02278 1.01550 1.21616 1.01526 0.92756 1.02635 0.90135 0.90206 0.89521 0.89515 0.89047 0.93973 0.95899 0.92465 0.90273 0.91065 0.92060 0.93308 0.92712 0.93540 0.90229 0.90937 0.92360 0.91668 0.92083 0.92245 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.32 8.50 36.01 0.31 -2.01 16 2 C 0.36 5.35 4.62 -29.03 -0.13 5.22 16 3 O -0.40 -7.71 13.65 -18.67 -0.25 -7.97 16 4 C -0.16 -2.14 3.75 -90.82 -0.34 -2.48 16 5 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 6 C -0.11 -1.73 6.80 -25.77 -0.18 -1.91 16 7 C -0.13 -2.29 2.52 -90.96 -0.23 -2.52 16 8 H 0.11 2.20 7.61 -51.93 -0.40 1.80 16 9 C 0.53 10.56 4.28 -10.99 -0.05 10.52 16 10 O -0.53 -11.49 8.46 -19.12 -0.16 -11.65 16 11 N -0.59 -11.77 2.05 -167.47 -0.34 -12.11 16 12 C 0.21 4.44 2.84 -5.20 -0.01 4.43 16 13 C -0.54 -14.08 9.89 -34.44 -0.34 -14.42 16 14 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 15 C 0.08 2.01 5.47 -17.82 -0.10 1.92 16 16 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 17 Si 0.87 19.48 27.47 -169.99 -4.67 14.81 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.26 -5.39 6.54 56.52 0.37 -5.02 16 21 C 0.15 2.79 3.28 -67.93 -0.22 2.57 16 22 C -0.16 -3.05 9.11 37.16 0.34 -2.71 16 23 C -0.17 -2.70 8.96 37.16 0.33 -2.37 16 24 C -0.05 -0.72 1.02 -153.70 -0.16 -0.88 16 25 C -0.16 -2.23 6.19 37.16 0.23 -2.00 16 26 C -0.13 -1.56 9.07 37.16 0.34 -1.22 16 27 H 0.08 0.76 6.09 -51.93 -0.32 0.45 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.05 7.44 -51.93 -0.39 0.67 16 30 H 0.09 1.14 7.66 -51.93 -0.40 0.74 16 31 H 0.09 1.66 6.70 -51.93 -0.35 1.31 16 32 H 0.04 0.88 3.51 -51.93 -0.18 0.70 16 33 H 0.02 0.49 7.31 -51.93 -0.38 0.11 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.08 1.43 7.77 -51.93 -0.40 1.02 16 36 H 0.07 1.44 6.45 -51.93 -0.33 1.11 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 41 H 0.08 1.46 6.24 -51.93 -0.32 1.14 16 42 H 0.07 1.12 5.54 -51.93 -0.29 0.83 16 43 H 0.06 0.64 7.12 -51.93 -0.37 0.27 16 44 H 0.06 0.96 3.71 -51.93 -0.19 0.76 16 45 H 0.06 0.67 7.34 -51.93 -0.38 0.29 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -30.63 344.21 -7.33 -37.97 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.65 Total: 6.78 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.21 Total: -7.88 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.43 Total: -37.25 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.42 Total: -19.62 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.67 Total: 14.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.63 -7.33 -37.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547706855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.061 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds