Wall clock time and date at job start Tue Mar 31 2020 06:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20759 * 120.00088 * 2 1 4 4 C 1.50703 * 119.99805 * 180.02562 * 2 1 3 5 5 H 1.09002 * 112.90607 * 292.28551 * 4 2 1 6 6 C 1.54055 * 113.60819 * 161.03224 * 4 2 1 7 7 C 1.53790 * 86.98167 * 270.87812 * 6 4 2 8 8 H 1.09001 * 113.61302 * 219.98130 * 7 6 4 9 9 C 1.50699 * 113.61087 * 89.16458 * 7 6 4 10 10 O 1.21290 * 119.99798 * 1.10509 * 9 7 6 11 11 N 1.34775 * 120.00057 * 181.09896 * 9 7 6 12 12 C 1.46494 * 119.99842 * 354.39612 * 11 9 7 13 13 C 1.50700 * 109.47023 * 269.99115 * 12 11 9 14 14 H 1.07991 * 119.99935 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99878 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99702 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00054 * 0.02562 * 15 13 12 18 18 H 1.48509 * 109.47073 * 89.99831 * 17 15 13 19 19 H 1.48495 * 109.47106 * 209.99348 * 17 15 13 20 20 H 1.48492 * 109.47302 * 330.00047 * 17 15 13 21 21 C 1.46506 * 119.99819 * 174.38637 * 11 9 7 22 22 C 1.52999 * 109.46683 * 64.29082 * 21 11 9 23 23 C 1.52998 * 109.47454 * 304.29000 * 21 11 9 24 24 C 1.53776 * 113.61573 * 63.53811 * 4 2 1 25 25 C 1.52998 * 113.61540 * 334.56581 * 24 4 2 26 26 C 1.53001 * 113.61308 * 203.66119 * 24 4 2 27 27 H 1.09002 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46897 * 299.99240 * 1 2 3 29 29 H 1.09002 * 109.46994 * 59.99463 * 1 2 3 30 30 H 1.09005 * 113.60765 * 156.38038 * 6 4 2 31 31 H 1.08997 * 113.70043 * 25.39698 * 6 4 2 32 32 H 1.09002 * 109.47297 * 29.99425 * 12 11 9 33 33 H 1.09002 * 109.47359 * 149.99408 * 12 11 9 34 34 H 0.96996 * 119.99930 * 180.02562 * 16 15 13 35 35 H 1.09006 * 109.46565 * 184.28735 * 21 11 9 36 36 H 1.08996 * 109.47235 * 294.83492 * 22 21 11 37 37 H 1.08999 * 109.47173 * 54.84114 * 22 21 11 38 38 H 1.09007 * 109.46780 * 174.83761 * 22 21 11 39 39 H 1.08994 * 109.46937 * 185.35086 * 23 21 11 40 40 H 1.09006 * 109.46793 * 305.35083 * 23 21 11 41 41 H 1.09001 * 109.47163 * 65.34499 * 23 21 11 42 42 H 1.08997 * 109.47398 * 163.92624 * 25 24 4 43 43 H 1.08997 * 109.47409 * 283.92718 * 25 24 4 44 44 H 1.09003 * 109.47136 * 43.92492 * 25 24 4 45 45 H 1.08997 * 109.47512 * 322.50724 * 26 24 4 46 46 H 1.09003 * 109.46597 * 82.50450 * 26 24 4 47 47 H 1.08994 * 109.47114 * 202.49988 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 2.1429 -1.8634 0.9282 6 6 3.7251 -1.1718 -0.4594 7 6 3.2128 -1.4046 -1.8906 8 1 3.8632 -2.0428 -2.4888 9 6 2.8192 -0.1371 -2.6044 10 8 2.9417 0.9345 -2.0495 11 7 2.3313 -0.1942 -3.8595 12 6 2.2979 -1.4721 -4.5749 13 6 3.5852 -1.6549 -5.3369 14 1 4.3516 -0.8954 -5.2923 15 6 3.7848 -2.7924 -6.0901 16 7 4.9084 -2.9522 -6.7547 17 14 2.4594 -4.1065 -6.1666 18 1 1.5414 -3.8184 -7.2979 19 1 3.0908 -5.4353 -6.3678 20 1 1.6921 -4.1103 -4.8953 21 6 1.8341 1.0218 -4.5081 22 6 2.9881 2.0091 -4.6934 23 6 0.7522 1.6600 -3.6346 24 6 2.0247 -2.1520 -1.2623 25 6 0.6883 -1.8673 -1.9507 26 6 2.2813 -3.6460 -1.0545 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.3718 -1.9687 -0.0921 31 1 4.1448 -0.1783 -0.3019 32 1 2.1804 -2.2861 -3.8595 33 1 1.4596 -1.4767 -5.2715 34 1 5.0487 -3.7522 -7.2849 35 1 1.4130 0.7683 -5.4810 36 1 3.3494 2.3331 -3.7174 37 1 3.7980 1.5234 -5.2378 38 1 2.6390 2.8743 -5.2571 39 1 0.3160 2.5098 -4.1595 40 1 -0.0248 0.9251 -3.4239 41 1 1.1947 1.9994 -2.6981 42 1 0.7072 -2.2724 -2.9624 43 1 -0.1180 -2.3360 -1.3867 44 1 0.5237 -0.7906 -1.9934 45 1 3.1364 -3.7791 -0.3918 46 1 1.4004 -4.1071 -0.6080 47 1 2.4898 -4.1159 -2.0156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547706855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:58 Heat of formation + Delta-G solvation = -63.114237 kcal Electronic energy + Delta-G solvation = -27221.645352 eV Core-core repulsion = 23791.129596 eV Total energy + Delta-G solvation = -3430.515756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.61592 -40.02935 -38.53394 -36.94031 -34.93864 -33.35199 -32.21404 -31.05806 -29.49858 -28.26309 -28.00095 -27.35939 -24.71968 -23.88660 -22.86233 -21.49996 -19.69561 -19.06539 -18.38006 -17.83156 -17.10512 -16.71771 -16.51564 -16.23948 -15.84709 -15.42884 -15.12857 -14.92318 -14.73918 -14.58510 -14.23441 -14.00445 -13.93059 -13.68433 -13.45499 -13.27006 -13.15868 -13.06462 -12.84330 -12.69280 -12.55117 -12.49414 -12.37903 -12.23084 -12.12508 -11.89480 -11.86252 -11.69349 -11.58976 -11.00667 -10.95106 -10.76452 -10.27972 -10.17727 -9.25912 -8.28184 -6.35355 1.28714 1.39725 1.40765 1.51424 1.88457 2.35334 2.36288 3.05731 3.23573 3.43480 3.51159 3.75028 3.77178 4.02439 4.22071 4.26210 4.29615 4.37532 4.47125 4.58409 4.64767 4.67986 4.71111 4.73926 4.80071 4.83368 4.85259 4.90329 4.92818 4.93167 4.96012 5.00010 5.09290 5.12063 5.19210 5.22647 5.28591 5.33085 5.39645 5.43607 5.55484 5.57181 5.93047 6.24715 6.67894 6.81488 6.90376 7.28869 7.56995 8.88799 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.007554 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.010669 B = 3705.837935 C = 4542.446887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.350 3.650 3 O -0.457 6.457 4 C -0.147 4.147 5 H 0.140 0.860 6 C -0.113 4.113 7 C -0.150 4.150 8 H 0.084 0.916 9 C 0.525 3.475 10 O -0.551 6.551 11 N -0.592 5.592 12 C 0.218 3.782 13 C -0.540 4.540 14 H 0.019 0.981 15 C 0.014 3.986 16 N -0.948 5.948 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.224 1.224 21 C 0.140 3.860 22 C -0.153 4.153 23 C -0.152 4.152 24 C -0.037 4.037 25 C -0.164 4.164 26 C -0.127 4.127 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 -2.046 13.014 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.225 3.775 3 O -0.330 6.330 4 C -0.166 4.166 5 H 0.158 0.842 6 C -0.150 4.150 7 C -0.171 4.171 8 H 0.102 0.898 9 C 0.314 3.686 10 O -0.431 6.431 11 N -0.323 5.323 12 C 0.096 3.904 13 C -0.578 4.578 14 H 0.038 0.962 15 C -0.184 4.184 16 N -0.588 5.588 17 Si 0.762 3.238 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.147 1.147 21 C 0.037 3.963 22 C -0.211 4.211 23 C -0.209 4.209 24 C -0.037 4.037 25 C -0.220 4.220 26 C -0.184 4.184 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.463 -1.019 13.174 18.864 hybrid contribution 0.762 -0.371 -1.092 1.383 sum -12.701 -1.390 12.081 17.584 Atomic orbital electron populations 1.22449 0.92470 1.06131 1.04203 1.24521 0.92934 0.89355 0.70703 1.90479 1.72569 1.35721 1.34196 1.23120 0.95935 0.96428 1.01111 0.84241 1.22790 0.96577 1.02584 0.93080 1.22744 1.01330 0.95804 0.97217 0.89815 1.20183 0.76425 0.90555 0.81441 1.90720 1.54440 1.30958 1.66939 1.47974 1.61238 1.09483 1.13633 1.19736 0.95235 0.82857 0.92533 1.21621 1.02268 1.04689 1.29240 0.96219 1.25874 0.97898 1.00510 0.94074 1.70084 1.27505 1.29141 1.32026 0.85830 0.79216 0.77660 0.81124 1.19217 1.21109 1.14682 1.21020 0.94143 0.84688 0.96438 1.22045 0.98392 0.99288 1.01385 1.22083 0.97272 1.00961 1.00619 1.21593 0.93362 0.95971 0.92792 1.22411 0.96415 1.01887 1.01320 1.21662 1.03616 0.90767 1.02379 0.87261 0.88571 0.90132 0.87114 0.92504 0.92214 0.94517 0.92433 0.89621 0.93106 0.95508 0.90314 0.90200 0.92024 0.92672 0.92360 0.88397 0.92819 0.91033 0.88926 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.83 8.50 71.24 0.61 -3.22 16 2 C 0.35 9.93 4.62 29.10 0.13 10.06 16 3 O -0.46 -17.60 13.65 22.14 0.30 -17.30 16 4 C -0.15 -3.60 3.75 -10.92 -0.04 -3.64 16 5 H 0.14 2.35 8.10 -2.39 -0.02 2.33 16 6 C -0.11 -3.48 6.80 31.22 0.21 -3.27 16 7 C -0.15 -5.30 2.52 -11.01 -0.03 -5.33 16 8 H 0.08 3.40 7.61 -2.39 -0.02 3.39 16 9 C 0.53 21.44 4.28 87.66 0.37 21.82 16 10 O -0.55 -24.76 8.46 20.52 0.17 -24.59 16 11 N -0.59 -24.03 2.05 -802.13 -1.65 -25.68 16 12 C 0.22 9.35 2.84 85.63 0.24 9.59 16 13 C -0.54 -29.43 9.89 25.60 0.25 -29.18 16 14 H 0.02 1.26 8.06 -2.92 -0.02 1.24 16 15 C 0.01 0.79 5.47 84.66 0.46 1.25 16 16 N -0.95 -57.31 13.96 21.45 0.30 -57.02 16 17 Si 0.94 39.30 27.47 68.60 1.88 41.18 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.22 -7.96 6.54 99.48 0.65 -7.31 16 21 C 0.14 5.19 3.28 44.99 0.15 5.33 16 22 C -0.15 -6.00 9.11 71.98 0.66 -5.35 16 23 C -0.15 -4.68 8.96 71.98 0.64 -4.03 16 24 C -0.04 -0.92 1.02 -51.66 -0.05 -0.97 16 25 C -0.16 -3.86 6.19 71.98 0.45 -3.41 16 26 C -0.13 -2.54 9.07 71.98 0.65 -1.89 16 27 H 0.11 1.47 6.09 -2.39 -0.01 1.45 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.73 7.44 -2.39 -0.02 1.71 16 30 H 0.11 2.79 7.66 -2.38 -0.02 2.77 16 31 H 0.06 2.16 6.70 -2.39 -0.02 2.14 16 32 H 0.06 2.38 3.51 -2.39 -0.01 2.37 16 33 H 0.04 1.49 7.31 -2.39 -0.02 1.47 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.09 3.03 7.77 -2.38 -0.02 3.01 16 36 H 0.05 2.18 6.45 -2.39 -0.02 2.16 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 1.70 7.77 -2.38 -0.02 1.68 16 41 H 0.05 2.01 6.24 -2.39 -0.01 1.99 16 42 H 0.06 1.56 5.54 -2.39 -0.01 1.54 16 43 H 0.10 1.54 7.12 -2.39 -0.02 1.52 16 44 H 0.05 1.40 3.71 -2.39 -0.01 1.39 16 45 H 0.07 1.28 7.34 -2.39 -0.02 1.26 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.53 344.21 6.62 -66.91 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.90 Total: 28.74 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.71 Total: -12.24 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.35 Total: -82.70 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: 0.48 Total: -41.89 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.88 Total: 41.18 kcal Total: -73.53 6.62 -66.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547706855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.792 kcal (2) G-P(sol) polarization free energy of solvation -73.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds