Wall clock time and date at job start Tue Mar 31 2020 07:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20757 * 120.00122 * 2 1 4 4 C 1.50696 * 119.99784 * 179.97438 * 2 1 3 5 5 H 1.08998 * 112.85037 * 26.68997 * 4 2 1 6 6 C 1.53785 * 113.61241 * 255.49514 * 4 2 1 7 7 C 1.53783 * 87.07886 * 220.01745 * 6 4 2 8 8 H 1.09002 * 113.61970 * 270.79929 * 7 6 4 9 9 C 1.50701 * 113.61113 * 139.98265 * 7 6 4 10 10 O 1.21287 * 120.00105 * 235.78702 * 9 7 6 11 11 N 1.34777 * 120.00390 * 55.78424 * 9 7 6 12 12 C 1.46499 * 120.00253 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46874 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47176 * 60.00575 * 13 12 11 15 15 C 1.52995 * 109.47483 * 299.99994 * 13 12 11 16 16 C 1.50708 * 109.46795 * 179.97438 * 13 12 11 17 17 H 1.07993 * 120.00226 * 5.71550 * 16 13 12 18 18 C 1.37880 * 119.99563 * 185.71064 * 16 13 12 19 19 N 1.31519 * 119.99659 * 149.12088 * 18 16 13 20 20 Si 1.86802 * 120.00460 * 329.11509 * 18 16 13 21 21 H 1.48493 * 109.47039 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46775 * 60.00270 * 20 18 16 23 23 H 1.48500 * 109.46984 * 300.00395 * 20 18 16 24 24 C 1.53776 * 87.17418 * 25.39253 * 7 6 4 25 25 C 1.53004 * 113.61496 * 89.15332 * 24 7 6 26 26 C 1.52997 * 113.61745 * 220.05881 * 24 7 6 27 27 H 1.08998 * 109.47003 * 270.00519 * 1 2 3 28 28 H 1.08998 * 109.46924 * 29.99667 * 1 2 3 29 29 H 1.08999 * 109.47134 * 150.00298 * 1 2 3 30 30 H 1.09002 * 113.61649 * 105.47522 * 6 4 2 31 31 H 1.08997 * 113.69195 * 334.57825 * 6 4 2 32 32 H 0.97003 * 119.99928 * 0.02562 * 11 9 7 33 33 H 1.09000 * 109.47013 * 60.00420 * 12 11 9 34 34 H 1.09003 * 109.47261 * 300.00443 * 12 11 9 35 35 H 1.09009 * 109.47368 * 171.68933 * 14 13 12 36 36 H 1.09003 * 109.46783 * 291.68871 * 14 13 12 37 37 H 1.08994 * 109.47519 * 51.69000 * 14 13 12 38 38 H 1.09004 * 109.47444 * 280.23994 * 15 13 12 39 39 H 1.09004 * 109.47048 * 40.24011 * 15 13 12 40 40 H 1.08995 * 109.47161 * 160.24085 * 15 13 12 41 41 H 0.96996 * 119.99898 * 354.78427 * 19 18 16 42 42 H 1.08997 * 109.46894 * 70.00722 * 25 24 7 43 43 H 1.09003 * 109.47081 * 190.00672 * 25 24 7 44 44 H 1.08997 * 109.47306 * 310.00608 * 25 24 7 45 45 H 1.09004 * 109.47209 * 59.99379 * 26 24 7 46 46 H 1.09003 * 109.47441 * 179.97438 * 26 24 7 47 47 H 1.09003 * 109.46899 * 300.00086 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6949 -2.1205 -0.4502 6 6 2.8741 -1.6615 1.3649 7 6 4.1075 -2.1580 0.5922 8 1 4.0488 -3.2075 0.3036 9 6 5.4156 -1.8048 1.2519 10 8 6.2572 -1.1850 0.6366 11 7 5.6503 -2.1777 2.5256 12 6 6.9222 -1.8348 3.1667 13 6 6.9321 -2.3718 4.5994 14 6 6.7669 -3.8926 4.5752 15 6 5.7791 -1.7460 5.3866 16 6 8.2408 -2.0196 5.2587 17 1 8.9521 -1.3901 4.7449 18 6 8.5297 -2.5011 6.5180 19 7 9.7765 -2.7433 6.8592 20 14 7.1504 -2.8092 7.7395 21 1 7.7207 -3.3214 9.0112 22 1 6.2083 -3.8114 7.1797 23 1 6.4257 -1.5391 7.9985 24 6 3.7012 -1.1872 -0.5291 25 6 4.2986 0.2128 -0.3739 26 6 3.8877 -1.7618 -1.9348 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3403 -2.4534 1.8904 31 1 3.0735 -0.7950 1.9953 32 1 4.9774 -2.6737 3.0176 33 1 7.0401 -0.7514 3.1836 34 1 7.7436 -2.2810 2.6061 35 1 6.9211 -4.2909 5.5781 36 1 5.7622 -4.1435 4.2350 37 1 7.4998 -4.3269 3.8953 38 1 6.0599 -0.7424 5.7063 39 1 4.8940 -1.6911 4.7528 40 1 5.5621 -2.3585 6.2617 41 1 10.4849 -2.6558 6.2023 42 1 5.3724 0.1719 -0.5565 43 1 3.8334 0.8880 -1.0922 44 1 4.1155 0.5760 0.6373 45 1 3.2782 -2.6588 -2.0444 46 1 3.5805 -1.0216 -2.6736 47 1 4.9369 -2.0146 -2.0877 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556730624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:54 Heat of formation + Delta-G solvation = -55.759189 kcal Electronic energy + Delta-G solvation = -25208.748159 eV Core-core repulsion = 21778.551341 eV Total energy + Delta-G solvation = -3430.196818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42283 -39.19127 -37.59371 -36.38985 -33.36176 -31.61061 -31.30887 -30.29054 -27.63307 -27.25151 -26.32022 -25.47111 -24.28899 -23.10221 -21.19133 -19.68158 -19.10080 -18.48829 -17.10711 -16.54051 -15.97787 -15.62247 -15.31558 -15.15605 -14.81813 -14.45567 -14.22877 -13.77021 -13.59263 -13.34602 -13.12511 -12.70920 -12.68824 -12.61368 -12.48299 -12.17154 -12.04348 -11.89219 -11.83482 -11.70396 -11.42844 -11.16608 -11.02985 -10.93041 -10.53418 -10.24667 -10.22188 -10.07877 -9.98082 -9.60644 -9.16240 -8.95685 -8.92772 -8.42667 -8.10250 -6.54456 -4.07860 1.73092 3.00257 3.32336 3.41631 3.57960 3.61176 3.92917 4.15395 4.23946 4.39738 4.46606 4.61032 4.84236 5.07077 5.10624 5.12523 5.15437 5.24688 5.29090 5.33710 5.45678 5.57589 5.65535 5.72417 5.83971 5.85665 6.01166 6.07349 6.09946 6.14606 6.25273 6.37289 6.39273 6.50214 6.57001 6.64287 6.66576 6.75160 6.85758 7.03114 7.29215 7.38877 7.49824 7.98990 8.15950 8.34991 8.67071 8.87107 9.54497 10.81791 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024984 B = 0.003736 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.438046 B = 7492.216762 C = 7985.428776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.361 3.639 3 O -0.443 6.443 4 C -0.165 4.165 5 H 0.115 0.885 6 C -0.109 4.109 7 C -0.129 4.129 8 H 0.117 0.883 9 C 0.516 3.484 10 O -0.540 6.540 11 N -0.721 5.721 12 C 0.143 3.857 13 C 0.036 3.964 14 C -0.138 4.138 15 C -0.155 4.155 16 C -0.612 4.612 17 H 0.060 0.940 18 C 0.047 3.953 19 N -0.886 5.886 20 Si 1.043 2.957 21 H -0.298 1.298 22 H -0.277 1.277 23 H -0.287 1.287 24 C -0.039 4.039 25 C -0.121 4.121 26 C -0.136 4.136 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.395 0.605 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.030 0.970 40 H 0.042 0.958 41 H 0.272 0.728 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.236 -0.961 -13.634 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.236 3.764 3 O -0.316 6.316 4 C -0.184 4.184 5 H 0.133 0.867 6 C -0.147 4.147 7 C -0.150 4.150 8 H 0.135 0.865 9 C 0.301 3.699 10 O -0.418 6.418 11 N -0.372 5.372 12 C 0.020 3.980 13 C 0.035 3.965 14 C -0.195 4.195 15 C -0.213 4.213 16 C -0.649 4.649 17 H 0.078 0.922 18 C -0.161 4.161 19 N -0.517 5.517 20 Si 0.874 3.126 21 H -0.225 1.225 22 H -0.205 1.205 23 H -0.214 1.214 24 C -0.039 4.039 25 C -0.178 4.178 26 C -0.194 4.194 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.230 0.770 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.547 -0.397 -12.503 23.207 hybrid contribution -0.217 0.011 -1.228 1.247 sum -19.765 -0.386 -13.731 24.069 Atomic orbital electron populations 1.22329 0.94846 1.04457 1.04513 1.24378 0.91521 0.89998 0.70552 1.90468 1.71279 1.35145 1.34691 1.23398 0.97108 0.97989 0.99861 0.86729 1.22791 0.95209 1.02059 0.94623 1.22891 0.92843 1.01467 0.97827 0.86478 1.20255 0.88097 0.79507 0.82044 1.90631 1.47075 1.40235 1.63831 1.46370 1.20405 1.57214 1.13240 1.21479 0.83054 0.99549 0.93875 1.18625 0.95769 0.91736 0.90416 1.22177 0.97519 0.98345 1.01472 1.22444 0.97860 1.01485 0.99478 1.21621 1.01802 1.37028 1.04478 0.92213 1.25629 1.00014 0.92463 0.97976 1.70843 1.01456 1.39584 1.39810 0.84366 0.75432 0.76801 0.75963 1.22527 1.20479 1.21414 1.21611 0.91613 0.96713 0.93989 1.21832 1.01564 0.92228 1.02147 1.21749 1.02527 1.00094 0.94995 0.88750 0.89948 0.89899 0.89707 0.89039 0.77029 0.92485 0.92369 0.92722 0.96081 0.93758 0.92514 0.95131 0.93957 0.91760 0.90425 0.92432 0.92652 0.92651 0.92506 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 10.25 36.01 0.37 -0.84 16 2 C 0.36 3.42 6.68 -29.03 -0.19 3.22 16 3 O -0.44 -5.94 13.20 6.00 0.08 -5.86 16 4 C -0.16 -1.40 3.58 -90.87 -0.33 -1.73 16 5 H 0.11 0.66 7.97 -51.93 -0.41 0.24 16 6 C -0.11 -1.03 6.69 -25.92 -0.17 -1.20 16 7 C -0.13 -1.48 3.66 -90.96 -0.33 -1.81 16 8 H 0.12 1.10 8.10 -51.93 -0.42 0.68 16 9 C 0.52 8.32 6.73 -10.98 -0.07 8.25 16 10 O -0.54 -10.74 13.90 5.55 0.08 -10.66 16 11 N -0.72 -11.89 4.73 -60.29 -0.29 -12.18 16 12 C 0.14 2.95 4.50 -4.04 -0.02 2.93 16 13 C 0.04 0.80 0.50 -155.66 -0.08 0.72 16 14 C -0.14 -2.85 7.81 37.16 0.29 -2.56 16 15 C -0.16 -3.15 7.13 37.15 0.26 -2.89 16 16 C -0.61 -16.57 8.31 -34.44 -0.29 -16.85 16 17 H 0.06 1.77 7.99 -52.49 -0.42 1.35 16 18 C 0.05 1.31 5.00 -17.82 -0.09 1.22 16 19 N -0.89 -26.45 13.70 55.43 0.76 -25.69 16 20 Si 1.04 24.65 23.38 -169.99 -3.97 20.68 16 21 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -5.95 5.49 56.52 0.31 -5.64 16 23 H -0.29 -6.49 7.04 56.52 0.40 -6.09 16 24 C -0.04 -0.44 1.11 -153.61 -0.17 -0.61 16 25 C -0.12 -1.76 6.07 37.16 0.23 -1.54 16 26 C -0.14 -1.34 9.20 37.16 0.34 -1.00 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.04 7.51 -51.93 -0.39 0.65 16 32 H 0.40 5.62 6.26 -40.82 -0.26 5.36 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 1.21 4.62 -51.92 -0.24 0.97 16 36 H 0.02 0.35 7.10 -51.93 -0.37 -0.02 16 37 H 0.04 0.93 8.13 -51.93 -0.42 0.50 16 38 H 0.06 1.21 7.97 -51.93 -0.41 0.79 16 39 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 40 H 0.04 0.85 3.80 -51.93 -0.20 0.66 16 41 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 42 H 0.08 1.31 6.05 -51.93 -0.31 1.00 16 43 H 0.06 0.82 6.79 -51.93 -0.35 0.47 16 44 H 0.05 0.89 6.36 -51.93 -0.33 0.56 16 45 H 0.05 0.42 7.95 -51.93 -0.41 0.01 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -31.96 352.76 -6.20 -38.16 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.92 Total: 4.90 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -0.25 Total: -14.67 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.47 Total: -37.86 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.16 Total: -16.52 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -3.97 Total: 20.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.96 -6.20 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556730624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.602 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds