Wall clock time and date at job start Tue Mar 31 2020 07:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20757 * 120.00122 * 2 1 4 4 C 1.50696 * 119.99784 * 179.97438 * 2 1 3 5 5 H 1.08998 * 112.85037 * 26.68997 * 4 2 1 6 6 C 1.53785 * 113.61241 * 255.49514 * 4 2 1 7 7 C 1.53783 * 87.07886 * 220.01745 * 6 4 2 8 8 H 1.09002 * 113.61970 * 270.79929 * 7 6 4 9 9 C 1.50701 * 113.61113 * 139.98265 * 7 6 4 10 10 O 1.21287 * 120.00105 * 235.78702 * 9 7 6 11 11 N 1.34777 * 120.00390 * 55.78424 * 9 7 6 12 12 C 1.46499 * 120.00253 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46874 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47176 * 60.00575 * 13 12 11 15 15 C 1.52995 * 109.47483 * 299.99994 * 13 12 11 16 16 C 1.50708 * 109.46795 * 179.97438 * 13 12 11 17 17 H 1.07993 * 120.00226 * 5.71550 * 16 13 12 18 18 C 1.37880 * 119.99563 * 185.71064 * 16 13 12 19 19 N 1.31519 * 119.99659 * 149.12088 * 18 16 13 20 20 Si 1.86802 * 120.00460 * 329.11509 * 18 16 13 21 21 H 1.48493 * 109.47039 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46775 * 60.00270 * 20 18 16 23 23 H 1.48500 * 109.46984 * 300.00395 * 20 18 16 24 24 C 1.53776 * 87.17418 * 25.39253 * 7 6 4 25 25 C 1.53004 * 113.61496 * 89.15332 * 24 7 6 26 26 C 1.52997 * 113.61745 * 220.05881 * 24 7 6 27 27 H 1.08998 * 109.47003 * 270.00519 * 1 2 3 28 28 H 1.08998 * 109.46924 * 29.99667 * 1 2 3 29 29 H 1.08999 * 109.47134 * 150.00298 * 1 2 3 30 30 H 1.09002 * 113.61649 * 105.47522 * 6 4 2 31 31 H 1.08997 * 113.69195 * 334.57825 * 6 4 2 32 32 H 0.97003 * 119.99928 * 0.02562 * 11 9 7 33 33 H 1.09000 * 109.47013 * 60.00420 * 12 11 9 34 34 H 1.09003 * 109.47261 * 300.00443 * 12 11 9 35 35 H 1.09009 * 109.47368 * 171.68933 * 14 13 12 36 36 H 1.09003 * 109.46783 * 291.68871 * 14 13 12 37 37 H 1.08994 * 109.47519 * 51.69000 * 14 13 12 38 38 H 1.09004 * 109.47444 * 280.23994 * 15 13 12 39 39 H 1.09004 * 109.47048 * 40.24011 * 15 13 12 40 40 H 1.08995 * 109.47161 * 160.24085 * 15 13 12 41 41 H 0.96996 * 119.99898 * 354.78427 * 19 18 16 42 42 H 1.08997 * 109.46894 * 70.00722 * 25 24 7 43 43 H 1.09003 * 109.47081 * 190.00672 * 25 24 7 44 44 H 1.08997 * 109.47306 * 310.00608 * 25 24 7 45 45 H 1.09004 * 109.47209 * 59.99379 * 26 24 7 46 46 H 1.09003 * 109.47441 * 179.97438 * 26 24 7 47 47 H 1.09003 * 109.46899 * 300.00086 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6949 -2.1205 -0.4502 6 6 2.8741 -1.6615 1.3649 7 6 4.1075 -2.1580 0.5922 8 1 4.0488 -3.2075 0.3036 9 6 5.4156 -1.8048 1.2519 10 8 6.2572 -1.1850 0.6366 11 7 5.6503 -2.1777 2.5256 12 6 6.9222 -1.8348 3.1667 13 6 6.9321 -2.3718 4.5994 14 6 6.7669 -3.8926 4.5752 15 6 5.7791 -1.7460 5.3866 16 6 8.2408 -2.0196 5.2587 17 1 8.9521 -1.3901 4.7449 18 6 8.5297 -2.5011 6.5180 19 7 9.7765 -2.7433 6.8592 20 14 7.1504 -2.8092 7.7395 21 1 7.7207 -3.3214 9.0112 22 1 6.2083 -3.8114 7.1797 23 1 6.4257 -1.5391 7.9985 24 6 3.7012 -1.1872 -0.5291 25 6 4.2986 0.2128 -0.3739 26 6 3.8877 -1.7618 -1.9348 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3403 -2.4534 1.8904 31 1 3.0735 -0.7950 1.9953 32 1 4.9774 -2.6737 3.0176 33 1 7.0401 -0.7514 3.1836 34 1 7.7436 -2.2810 2.6061 35 1 6.9211 -4.2909 5.5781 36 1 5.7622 -4.1435 4.2350 37 1 7.4998 -4.3269 3.8953 38 1 6.0599 -0.7424 5.7063 39 1 4.8940 -1.6911 4.7528 40 1 5.5621 -2.3585 6.2617 41 1 10.4849 -2.6558 6.2023 42 1 5.3724 0.1719 -0.5565 43 1 3.8334 0.8880 -1.0922 44 1 4.1155 0.5760 0.6373 45 1 3.2782 -2.6588 -2.0444 46 1 3.5805 -1.0216 -2.6736 47 1 4.9369 -2.0146 -2.0877 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556730624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:54 Heat of formation + Delta-G solvation = -77.920944 kcal Electronic energy + Delta-G solvation = -25209.709165 eV Core-core repulsion = 21778.551341 eV Total energy + Delta-G solvation = -3431.157823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33240 -40.37659 -38.79068 -37.88452 -35.08647 -33.44341 -32.11316 -31.06733 -28.67787 -28.26691 -27.96758 -26.98735 -26.17562 -23.93451 -22.29012 -21.00717 -20.65879 -19.43135 -18.82658 -17.89279 -16.98522 -16.64665 -16.55094 -16.30150 -16.05633 -15.78503 -15.34639 -14.98325 -14.73207 -14.56210 -14.36848 -14.30027 -14.13314 -14.04599 -13.53774 -13.27596 -13.19623 -13.01073 -12.91522 -12.62635 -12.58559 -12.33034 -12.19720 -12.08109 -12.06131 -11.92291 -11.80253 -11.72748 -11.09627 -11.04768 -10.74622 -10.67755 -10.26902 -10.05182 -9.84502 -8.77864 -6.31075 1.04291 1.43760 1.54559 1.73015 1.75319 2.32433 2.50225 2.97573 3.21817 3.33258 3.40721 3.63356 3.84337 4.07994 4.19931 4.27947 4.29877 4.35158 4.46006 4.51546 4.57124 4.68730 4.74642 4.79026 4.80604 4.83126 4.85566 4.87534 4.91557 4.93248 4.99228 5.06135 5.14149 5.14786 5.19121 5.24825 5.28228 5.40874 5.49038 5.54375 5.61631 5.80216 6.02660 6.18759 6.57201 6.69755 6.72503 7.38297 7.40878 8.56684 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024984 B = 0.003736 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.438046 B = 7492.216762 C = 7985.428776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.357 3.643 3 O -0.496 6.496 4 C -0.148 4.148 5 H 0.163 0.837 6 C -0.104 4.104 7 C -0.123 4.123 8 H 0.155 0.845 9 C 0.508 3.492 10 O -0.586 6.586 11 N -0.710 5.710 12 C 0.160 3.840 13 C 0.034 3.966 14 C -0.134 4.134 15 C -0.153 4.153 16 C -0.621 4.621 17 H 0.010 0.990 18 C -0.002 4.002 19 N -0.923 5.923 20 Si 1.081 2.919 21 H -0.308 1.308 22 H -0.229 1.229 23 H -0.269 1.269 24 C -0.054 4.054 25 C -0.108 4.108 26 C -0.133 4.133 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.412 0.588 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.255 0.745 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.031 0.969 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.862 -3.703 -13.923 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.236 3.764 3 O -0.372 6.372 4 C -0.166 4.166 5 H 0.180 0.820 6 C -0.141 4.141 7 C -0.144 4.144 8 H 0.172 0.828 9 C 0.297 3.703 10 O -0.467 6.467 11 N -0.363 5.363 12 C 0.035 3.965 13 C 0.032 3.968 14 C -0.191 4.191 15 C -0.210 4.210 16 C -0.658 4.658 17 H 0.028 0.972 18 C -0.202 4.202 19 N -0.556 5.556 20 Si 0.904 3.096 21 H -0.237 1.237 22 H -0.154 1.154 23 H -0.194 1.194 24 C -0.055 4.055 25 C -0.165 4.165 26 C -0.190 4.190 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -25.226 -3.161 -12.820 28.473 hybrid contribution 1.660 0.988 -1.260 2.306 sum -23.566 -2.173 -14.080 27.538 Atomic orbital electron populations 1.22336 0.91627 1.05827 1.05716 1.25056 0.93379 0.89525 0.68472 1.90475 1.72631 1.36931 1.37199 1.23491 0.95236 0.98968 0.98934 0.81955 1.22812 0.94074 1.02275 0.94944 1.23064 0.90239 1.03283 0.97768 0.82787 1.21302 0.89474 0.78121 0.81449 1.90636 1.49170 1.42052 1.64796 1.46118 1.18992 1.57528 1.13628 1.20934 0.84633 0.97415 0.93498 1.18570 0.94114 0.93463 0.90625 1.22078 1.00097 0.96173 1.00797 1.22324 0.98137 1.00327 1.00175 1.21858 1.03387 1.35888 1.04703 0.97196 1.27098 1.01281 0.91788 1.00063 1.70978 1.02278 1.42812 1.39510 0.83946 0.73604 0.78757 0.73242 1.23691 1.15410 1.19444 1.21666 0.94159 0.94407 0.95247 1.21621 0.99426 0.95065 1.00407 1.21735 1.01892 1.01482 0.93862 0.87388 0.90554 0.86618 0.85359 0.91624 0.75017 0.95360 0.95272 0.93724 0.91170 0.95102 0.94303 0.91091 0.92895 0.93618 0.93984 0.93014 0.94986 0.89015 0.92586 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 10.25 71.24 0.73 -0.76 16 2 C 0.36 5.72 6.68 29.10 0.19 5.92 16 3 O -0.50 -13.17 13.20 -1.44 -0.02 -13.19 16 4 C -0.15 -1.82 3.58 -10.95 -0.04 -1.86 16 5 H 0.16 0.55 7.97 -2.39 -0.02 0.53 16 6 C -0.10 -1.45 6.69 31.12 0.21 -1.24 16 7 C -0.12 -2.37 3.66 -11.01 -0.04 -2.41 16 8 H 0.15 1.96 8.10 -2.39 -0.02 1.94 16 9 C 0.51 16.03 6.73 87.66 0.59 16.62 16 10 O -0.59 -24.42 13.90 -3.05 -0.04 -24.46 16 11 N -0.71 -22.26 4.73 -463.06 -2.19 -24.45 16 12 C 0.16 6.77 4.50 86.38 0.39 7.16 16 13 C 0.03 1.47 0.50 -52.93 -0.03 1.45 16 14 C -0.13 -5.19 7.81 71.98 0.56 -4.63 16 15 C -0.15 -5.74 7.13 71.98 0.51 -5.22 16 16 C -0.62 -35.05 8.31 25.60 0.21 -34.83 16 17 H 0.01 0.63 7.99 -2.91 -0.02 0.60 16 18 C 0.00 -0.09 5.00 84.65 0.42 0.34 16 19 N -0.92 -57.53 13.70 21.45 0.29 -57.24 16 20 Si 1.08 48.26 23.38 68.60 1.60 49.87 16 21 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.23 -8.53 5.49 99.48 0.55 -7.99 16 23 H -0.27 -11.18 7.04 99.48 0.70 -10.48 16 24 C -0.05 -1.11 1.11 -51.60 -0.06 -1.17 16 25 C -0.11 -3.29 6.07 71.98 0.44 -2.86 16 26 C -0.13 -2.26 9.20 71.98 0.66 -1.60 16 27 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.12 0.14 8.12 -2.39 -0.02 0.12 16 30 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.31 7.51 -2.39 -0.02 1.29 16 32 H 0.41 9.92 6.26 -92.71 -0.58 9.34 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.82 4.62 -2.38 -0.01 1.81 16 36 H 0.07 2.02 7.10 -2.39 -0.02 2.01 16 37 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 38 H 0.04 1.59 7.97 -2.39 -0.02 1.57 16 39 H 0.07 2.08 6.54 -2.38 -0.02 2.06 16 40 H 0.05 1.89 3.80 -2.39 -0.01 1.88 16 41 H 0.26 16.24 8.73 -92.71 -0.81 15.43 16 42 H 0.04 1.54 6.05 -2.39 -0.01 1.52 16 43 H 0.05 1.57 6.79 -2.39 -0.02 1.56 16 44 H 0.03 1.08 6.36 -2.39 -0.02 1.06 16 45 H 0.09 0.90 7.95 -2.39 -0.02 0.89 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -79.90 352.76 4.58 -75.32 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.17 Total: 19.26 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 4.76 Total: -25.11 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.90 Total: -81.69 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.06 Total: -37.65 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.60 Total: 49.87 kcal Total: -79.90 4.58 -75.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556730624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.598 kcal (2) G-P(sol) polarization free energy of solvation -79.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds