Wall clock time and date at job start Tue Mar 31 2020 07:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.27407 * 2 1 4 4 C 1.54941 * 110.30824 * 237.80066 * 2 1 3 5 5 C 1.55309 * 100.94001 * 204.63982 * 4 2 1 6 6 H 1.09001 * 110.84978 * 152.32477 * 5 4 2 7 7 C 1.53003 * 110.84799 * 275.94093 * 5 4 2 8 8 C 1.54378 * 102.25376 * 34.13436 * 5 4 2 9 9 H 1.09002 * 109.90727 * 98.20169 * 8 5 4 10 10 C 1.50698 * 109.83109 * 219.13058 * 8 5 4 11 11 O 1.21276 * 120.00602 * 114.58800 * 10 8 5 12 12 N 1.34784 * 120.00175 * 294.58731 * 10 8 5 13 13 C 1.46920 * 120.63583 * 180.02562 * 12 10 8 14 14 C 1.53194 * 108.77614 * 233.62951 * 13 12 10 15 15 C 1.53034 * 109.31102 * 305.36545 * 14 13 12 16 16 C 1.52998 * 109.45819 * 181.38610 * 15 14 13 17 17 C 1.50706 * 109.47348 * 174.96969 * 16 15 14 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 C 1.53035 * 109.53113 * 61.36933 * 15 14 13 26 26 C 1.46932 * 120.62583 * 0.02562 * 12 10 8 27 27 O 1.43233 * 107.58828 * 338.64376 * 8 5 4 28 28 H 1.09008 * 109.47220 * 299.36675 * 1 2 3 29 29 H 1.08994 * 109.47349 * 59.36644 * 1 2 3 30 30 H 1.08998 * 109.47141 * 179.37141 * 1 2 3 31 31 H 1.08998 * 111.12995 * 322.55363 * 4 2 1 32 32 H 1.08999 * 111.12858 * 86.67889 * 4 2 1 33 33 H 1.08996 * 109.46928 * 172.83276 * 7 5 4 34 34 H 1.08996 * 109.47421 * 292.83335 * 7 5 4 35 35 H 1.09000 * 109.46624 * 52.83317 * 7 5 4 36 36 H 1.09001 * 109.58830 * 113.83993 * 13 12 10 37 37 H 1.09004 * 109.58421 * 353.41537 * 13 12 10 38 38 H 1.08994 * 109.49480 * 185.40745 * 14 13 12 39 39 H 1.08997 * 109.52111 * 65.32819 * 14 13 12 40 40 H 1.08998 * 109.45949 * 301.35465 * 15 14 13 41 41 H 1.09001 * 109.47671 * 54.97178 * 16 15 14 42 42 H 1.09006 * 109.47297 * 294.96897 * 16 15 14 43 43 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 44 44 H 1.09003 * 109.49503 * 58.57865 * 25 15 14 45 45 H 1.08998 * 109.49997 * 178.67494 * 25 15 14 46 46 H 1.08998 * 109.58232 * 246.15730 * 26 12 10 47 47 H 1.09002 * 109.58704 * 6.57719 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0677 -0.7743 -1.2296 5 6 3.4699 -1.2032 -0.7177 6 1 3.7966 -2.1218 -1.2052 7 6 4.4911 -0.0827 -0.9239 8 6 3.2112 -1.4412 0.7855 9 1 3.0630 -2.5047 0.9728 10 6 4.3812 -0.9386 1.5915 11 8 4.2385 -0.0020 2.3486 12 7 5.5864 -1.5299 1.4709 13 6 6.7363 -1.0516 2.2503 14 6 7.8937 -0.7566 1.2910 15 6 8.1804 -2.0000 0.4462 16 6 9.3585 -1.7203 -0.4890 17 6 9.7205 -2.9807 -1.2319 18 1 9.1659 -3.8903 -1.0543 19 6 10.7595 -2.9724 -2.1381 20 7 11.4351 -1.8649 -2.3539 21 14 11.2085 -4.5348 -3.0583 22 1 12.3511 -4.2630 -3.9670 23 1 11.5893 -5.5902 -2.0855 24 1 10.0417 -4.9931 -3.8545 25 6 6.9433 -2.3514 -0.3832 26 6 5.7751 -2.6651 0.5574 27 8 2.0286 -0.7157 1.1414 28 1 -0.3634 0.5040 0.8957 29 1 -0.3634 0.5236 -0.8842 30 1 -0.3633 -1.0276 -0.0113 31 1 1.4471 -1.6430 -1.4491 32 1 2.1489 -0.1227 -2.0996 33 1 5.4314 -0.3554 -0.4449 34 1 4.6567 0.0663 -1.9908 35 1 4.1126 0.8394 -0.4827 36 1 7.0390 -1.8186 2.9632 37 1 6.4629 -0.1413 2.7838 38 1 8.7827 -0.4929 1.8638 39 1 7.6229 0.0726 0.6375 40 1 8.4274 -2.8352 1.1016 41 1 10.2150 -1.3847 0.0957 42 1 9.0797 -0.9452 -1.2029 43 1 11.2021 -1.0537 -1.8758 44 1 6.6809 -1.5071 -1.0207 45 1 7.1558 -3.2231 -1.0022 46 1 5.9995 -3.5634 1.1325 47 1 4.8673 -2.8196 -0.0260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563187229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:46 Heat of formation + Delta-G solvation = -100.952212 kcal Electronic energy + Delta-G solvation = -25616.633534 eV Core-core repulsion = 22184.476999 eV Total energy + Delta-G solvation = -3432.156534 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08527 -39.01621 -37.25173 -34.48722 -33.57723 -32.53903 -32.02176 -30.73267 -28.14299 -27.07768 -26.75498 -24.29699 -22.96184 -22.42393 -21.38364 -20.98997 -19.99652 -18.74023 -17.32392 -16.73135 -16.50480 -16.24646 -15.71359 -15.17059 -14.47956 -13.97780 -13.85717 -13.80694 -13.62608 -13.55463 -13.26877 -13.11686 -12.78974 -12.58980 -12.56760 -12.27006 -12.19347 -11.72796 -11.71656 -11.31910 -11.30289 -11.20714 -11.11092 -10.99409 -10.73957 -10.63077 -10.18695 -10.17865 -10.04736 -9.80620 -9.61527 -9.20430 -8.58638 -8.35650 -8.34719 -6.37662 -4.07078 2.65790 2.91163 3.40315 3.41960 3.60686 3.66085 4.11181 4.36924 4.43757 4.51560 4.70793 4.84690 4.95223 5.03471 5.07768 5.21996 5.29483 5.33991 5.35117 5.39125 5.40925 5.42331 5.48755 5.57274 5.58471 5.66186 5.75872 5.81444 5.86400 5.90903 5.93793 5.98053 6.14251 6.25059 6.31418 6.38551 6.56084 6.77251 6.82348 6.85599 6.93410 7.35670 7.48968 7.52835 8.18772 8.26689 8.43502 8.86287 9.65103 11.02572 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.003819 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.039268 B = 7329.940423 C = 7957.624248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 H 0.071 0.929 4 C -0.147 4.147 5 C -0.115 4.115 6 H 0.101 0.899 7 C -0.168 4.168 8 C 0.069 3.931 9 H 0.103 0.897 10 C 0.509 3.491 11 O -0.534 6.534 12 N -0.605 5.605 13 C 0.113 3.887 14 C -0.130 4.130 15 C -0.073 4.073 16 C 0.015 3.985 17 C -0.598 4.598 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.914 5.914 21 Si 1.066 2.934 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.288 1.288 25 C -0.122 4.122 26 C 0.096 3.904 27 O -0.350 6.350 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.006 0.994 42 H 0.006 0.994 43 H 0.268 0.732 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 0.318 2.990 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.089 0.911 4 C -0.184 4.184 5 C -0.134 4.134 6 H 0.119 0.881 7 C -0.225 4.225 8 C 0.008 3.992 9 H 0.120 0.880 10 C 0.296 3.704 11 O -0.411 6.411 12 N -0.341 5.341 13 C -0.009 4.009 14 C -0.169 4.169 15 C -0.092 4.092 16 C -0.022 4.022 17 C -0.636 4.636 18 H 0.068 0.932 19 C -0.190 4.190 20 N -0.550 5.550 21 Si 0.894 3.106 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.160 4.160 26 C -0.026 4.026 27 O -0.268 6.268 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.025 0.208 2.485 18.197 hybrid contribution -0.815 0.523 0.927 1.340 sum -18.840 0.731 3.412 19.161 Atomic orbital electron populations 1.21868 0.93479 1.02781 1.02490 1.23029 0.94811 0.95945 0.84614 0.91064 1.23409 0.95334 1.01042 0.98637 1.22726 0.96595 1.01161 0.92908 0.88061 1.22198 0.99692 0.97658 1.02916 1.22693 0.85495 0.96962 0.94061 0.87985 1.20792 0.83866 0.83062 0.82695 1.90667 1.83695 1.28171 1.38523 1.48174 1.08985 1.33662 1.43254 1.21642 0.85338 1.00220 0.93712 1.22049 0.96985 0.99592 0.98239 1.21046 0.95975 0.95548 0.96623 1.19246 0.91978 0.97297 0.93696 1.22025 1.19141 0.96349 1.26060 0.93242 1.25805 0.93598 1.03105 0.96478 1.70782 1.40803 1.01192 1.42238 0.83588 0.76349 0.74420 0.76227 1.20853 1.21502 1.21492 1.21991 0.93493 1.03045 0.97429 1.22112 1.00217 0.88225 0.92085 1.88501 1.39406 1.64683 1.34186 0.91784 0.91149 0.91896 0.89926 0.89416 0.89812 0.91502 0.92403 0.91755 0.89646 0.91190 0.92186 0.92185 0.97569 0.97598 0.92107 0.91793 0.89566 0.91373 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.62 37.16 0.36 -0.87 16 2 C 0.07 0.78 3.77 -25.71 -0.10 0.68 16 3 H 0.07 0.81 7.74 -51.93 -0.40 0.41 16 4 C -0.15 -1.28 6.07 -24.48 -0.15 -1.43 16 5 C -0.12 -1.21 2.54 -88.67 -0.23 -1.43 16 6 H 0.10 0.92 6.68 -51.93 -0.35 0.57 16 7 C -0.17 -2.05 7.91 37.16 0.29 -1.76 16 8 C 0.07 0.87 3.00 -27.16 -0.08 0.79 16 9 H 0.10 1.09 7.73 -51.93 -0.40 0.69 16 10 C 0.51 7.89 5.45 -10.98 -0.06 7.83 16 11 O -0.53 -10.29 15.94 -14.09 -0.22 -10.51 16 12 N -0.61 -8.74 2.07 -172.75 -0.36 -9.10 16 13 C 0.11 1.69 6.43 -3.71 -0.02 1.66 16 14 C -0.13 -2.14 5.36 -26.61 -0.14 -2.29 16 15 C -0.07 -1.37 2.10 -90.58 -0.19 -1.56 16 16 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 17 C -0.60 -15.98 8.39 -34.44 -0.29 -16.27 16 18 H 0.05 1.28 7.06 -52.48 -0.37 0.91 16 19 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 20 N -0.91 -27.44 13.65 55.43 0.76 -26.69 16 21 Si 1.07 24.48 29.90 -169.99 -5.08 19.40 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.12 -1.98 4.92 -26.60 -0.13 -2.11 16 26 C 0.10 1.24 5.49 -3.69 -0.02 1.22 16 27 O -0.35 -4.88 10.25 -54.88 -0.56 -5.44 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 32 H 0.09 0.67 8.04 -51.93 -0.42 0.25 16 33 H 0.08 1.19 3.49 -51.93 -0.18 1.01 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.76 7.47 -51.93 -0.39 0.37 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 42 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 43 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 44 H 0.06 1.06 6.13 -51.93 -0.32 0.74 16 45 H 0.09 1.51 6.91 -51.93 -0.36 1.15 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.85 4.01 -51.93 -0.21 0.64 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -32.38 350.22 -9.05 -41.43 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.90 Total: 0.62 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.96 Total: -14.99 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.40 Total: -35.78 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.79 Total: -15.96 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.38 -9.05 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563187229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.522 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds