Wall clock time and date at job start Tue Mar 31 2020 07:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.27407 * 2 1 4 4 C 1.54941 * 110.30824 * 237.80066 * 2 1 3 5 5 C 1.55309 * 100.94001 * 204.63982 * 4 2 1 6 6 H 1.09001 * 110.84978 * 152.32477 * 5 4 2 7 7 C 1.53003 * 110.84799 * 275.94093 * 5 4 2 8 8 C 1.54378 * 102.25376 * 34.13436 * 5 4 2 9 9 H 1.09002 * 109.90727 * 98.20169 * 8 5 4 10 10 C 1.50698 * 109.83109 * 219.13058 * 8 5 4 11 11 O 1.21276 * 120.00602 * 114.58800 * 10 8 5 12 12 N 1.34784 * 120.00175 * 294.58731 * 10 8 5 13 13 C 1.46920 * 120.63583 * 180.02562 * 12 10 8 14 14 C 1.53194 * 108.77614 * 233.62951 * 13 12 10 15 15 C 1.53034 * 109.31102 * 305.36545 * 14 13 12 16 16 C 1.52998 * 109.45819 * 181.38610 * 15 14 13 17 17 C 1.50706 * 109.47348 * 174.96969 * 16 15 14 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 C 1.53035 * 109.53113 * 61.36933 * 15 14 13 26 26 C 1.46932 * 120.62583 * 0.02562 * 12 10 8 27 27 O 1.43233 * 107.58828 * 338.64376 * 8 5 4 28 28 H 1.09008 * 109.47220 * 299.36675 * 1 2 3 29 29 H 1.08994 * 109.47349 * 59.36644 * 1 2 3 30 30 H 1.08998 * 109.47141 * 179.37141 * 1 2 3 31 31 H 1.08998 * 111.12995 * 322.55363 * 4 2 1 32 32 H 1.08999 * 111.12858 * 86.67889 * 4 2 1 33 33 H 1.08996 * 109.46928 * 172.83276 * 7 5 4 34 34 H 1.08996 * 109.47421 * 292.83335 * 7 5 4 35 35 H 1.09000 * 109.46624 * 52.83317 * 7 5 4 36 36 H 1.09001 * 109.58830 * 113.83993 * 13 12 10 37 37 H 1.09004 * 109.58421 * 353.41537 * 13 12 10 38 38 H 1.08994 * 109.49480 * 185.40745 * 14 13 12 39 39 H 1.08997 * 109.52111 * 65.32819 * 14 13 12 40 40 H 1.08998 * 109.45949 * 301.35465 * 15 14 13 41 41 H 1.09001 * 109.47671 * 54.97178 * 16 15 14 42 42 H 1.09006 * 109.47297 * 294.96897 * 16 15 14 43 43 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 44 44 H 1.09003 * 109.49503 * 58.57865 * 25 15 14 45 45 H 1.08998 * 109.49997 * 178.67494 * 25 15 14 46 46 H 1.08998 * 109.58232 * 246.15730 * 26 12 10 47 47 H 1.09002 * 109.58704 * 6.57719 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0677 -0.7743 -1.2296 5 6 3.4699 -1.2032 -0.7177 6 1 3.7966 -2.1218 -1.2052 7 6 4.4911 -0.0827 -0.9239 8 6 3.2112 -1.4412 0.7855 9 1 3.0630 -2.5047 0.9728 10 6 4.3812 -0.9386 1.5915 11 8 4.2385 -0.0020 2.3486 12 7 5.5864 -1.5299 1.4709 13 6 6.7363 -1.0516 2.2503 14 6 7.8937 -0.7566 1.2910 15 6 8.1804 -2.0000 0.4462 16 6 9.3585 -1.7203 -0.4890 17 6 9.7205 -2.9807 -1.2319 18 1 9.1659 -3.8903 -1.0543 19 6 10.7595 -2.9724 -2.1381 20 7 11.4351 -1.8649 -2.3539 21 14 11.2085 -4.5348 -3.0583 22 1 12.3511 -4.2630 -3.9670 23 1 11.5893 -5.5902 -2.0855 24 1 10.0417 -4.9931 -3.8545 25 6 6.9433 -2.3514 -0.3832 26 6 5.7751 -2.6651 0.5574 27 8 2.0286 -0.7157 1.1414 28 1 -0.3634 0.5040 0.8957 29 1 -0.3634 0.5236 -0.8842 30 1 -0.3633 -1.0276 -0.0113 31 1 1.4471 -1.6430 -1.4491 32 1 2.1489 -0.1227 -2.0996 33 1 5.4314 -0.3554 -0.4449 34 1 4.6567 0.0663 -1.9908 35 1 4.1126 0.8394 -0.4827 36 1 7.0390 -1.8186 2.9632 37 1 6.4629 -0.1413 2.7838 38 1 8.7827 -0.4929 1.8638 39 1 7.6229 0.0726 0.6375 40 1 8.4274 -2.8352 1.1016 41 1 10.2150 -1.3847 0.0957 42 1 9.0797 -0.9452 -1.2029 43 1 11.2021 -1.0537 -1.8758 44 1 6.6809 -1.5071 -1.0207 45 1 7.1558 -3.2231 -1.0022 46 1 5.9995 -3.5634 1.1325 47 1 4.8673 -2.8196 -0.0260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563187229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:46 Heat of formation + Delta-G solvation = -119.053190 kcal Electronic energy + Delta-G solvation = -25617.418451 eV Core-core repulsion = 22184.476999 eV Total energy + Delta-G solvation = -3432.941451 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14421 -40.10095 -38.61797 -36.07711 -34.78350 -33.88626 -33.16159 -31.92777 -29.72070 -28.05113 -27.77359 -25.96366 -24.26471 -23.88675 -22.48742 -21.88158 -21.33027 -19.97369 -18.81321 -18.36266 -17.52777 -17.15489 -16.86360 -16.27310 -15.68069 -15.57126 -15.38131 -15.30791 -14.82718 -14.78046 -14.40603 -14.17938 -13.93930 -13.79151 -13.49061 -13.36137 -13.19617 -13.10751 -12.98700 -12.87345 -12.58284 -12.42105 -12.33789 -12.06462 -11.95166 -11.93379 -11.64078 -11.57680 -11.42653 -11.20371 -11.09964 -10.52245 -10.48214 -10.31629 -9.64862 -8.61178 -6.31240 1.49416 1.55944 1.64031 1.81116 1.82014 2.61387 2.77877 3.22715 3.25491 3.38898 3.62646 3.82842 3.91703 3.93639 3.95446 4.08523 4.13220 4.19094 4.28397 4.35023 4.38213 4.48126 4.55173 4.58715 4.66948 4.73879 4.77211 4.78968 4.85507 4.86774 4.97222 4.99220 5.03906 5.07856 5.13132 5.19250 5.24225 5.28989 5.35021 5.38364 5.55540 5.69115 5.91921 6.07928 6.26214 6.35972 6.64451 7.08575 7.51075 8.79090 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.003819 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.039268 B = 7329.940423 C = 7957.624248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.062 3.938 3 H 0.052 0.948 4 C -0.135 4.135 5 C -0.112 4.112 6 H 0.126 0.874 7 C -0.166 4.166 8 C 0.068 3.932 9 H 0.130 0.870 10 C 0.505 3.495 11 O -0.581 6.581 12 N -0.603 5.603 13 C 0.118 3.882 14 C -0.121 4.121 15 C -0.066 4.066 16 C 0.018 3.982 17 C -0.600 4.600 18 H 0.061 0.939 19 C -0.044 4.044 20 N -0.946 5.946 21 Si 1.114 2.886 22 H -0.292 1.292 23 H -0.270 1.270 24 H -0.264 1.264 25 C -0.115 4.115 26 C 0.104 3.896 27 O -0.376 6.376 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.061 0.939 41 H -0.022 1.022 42 H -0.018 1.018 43 H 0.252 0.748 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.078 -2.295 2.091 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.005 3.995 3 H 0.070 0.930 4 C -0.172 4.172 5 C -0.131 4.131 6 H 0.144 0.856 7 C -0.223 4.223 8 C 0.007 3.993 9 H 0.147 0.853 10 C 0.294 3.706 11 O -0.461 6.461 12 N -0.337 5.337 13 C -0.004 4.004 14 C -0.159 4.159 15 C -0.085 4.085 16 C -0.019 4.019 17 C -0.638 4.638 18 H 0.079 0.921 19 C -0.240 4.240 20 N -0.584 5.584 21 Si 0.936 3.064 22 H -0.218 1.218 23 H -0.195 1.195 24 H -0.188 1.188 25 C -0.153 4.153 26 C -0.018 4.018 27 O -0.295 6.295 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.079 0.921 41 H -0.004 1.004 42 H 0.000 1.000 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.246 -2.420 1.593 20.452 hybrid contribution -0.095 1.433 1.242 1.899 sum -20.340 -0.987 2.835 20.561 Atomic orbital electron populations 1.21860 0.91648 1.03552 1.03027 1.23232 0.96268 0.95125 0.84831 0.92970 1.23410 0.94048 1.01822 0.97897 1.22776 0.97168 1.01353 0.91759 0.85575 1.22148 0.99236 0.97767 1.03125 1.22883 0.83922 0.97915 0.94572 0.85254 1.21475 0.84717 0.82222 0.82202 1.90642 1.84489 1.30251 1.40679 1.48229 1.08592 1.33820 1.43050 1.21527 0.84894 1.00531 0.93463 1.21910 0.97811 0.98136 0.98057 1.20918 0.95131 0.96408 0.96055 1.19183 0.93236 0.95759 0.93762 1.22445 1.18586 0.97387 1.25386 0.92078 1.27370 0.93836 1.05181 0.97659 1.70926 1.42363 1.01607 1.43522 0.82975 0.76659 0.71225 0.75568 1.21770 1.19512 1.18839 1.21874 0.93525 1.02366 0.97569 1.22171 1.00066 0.87923 0.91627 1.88485 1.39699 1.65118 1.36211 0.92856 0.89022 0.90974 0.87526 0.88103 0.91930 0.90456 0.94242 0.90046 0.90615 0.91307 0.93498 0.92082 1.00358 0.99976 0.93813 0.92400 0.90366 0.89591 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.62 71.98 0.69 -1.37 16 2 C 0.06 1.23 3.77 31.26 0.12 1.34 16 3 H 0.05 1.19 7.74 -2.39 -0.02 1.17 16 4 C -0.13 -1.89 6.07 32.05 0.19 -1.69 16 5 C -0.11 -2.01 2.54 -9.53 -0.02 -2.03 16 6 H 0.13 1.67 6.68 -2.39 -0.02 1.65 16 7 C -0.17 -3.89 7.91 71.98 0.57 -3.32 16 8 C 0.07 1.55 3.00 30.32 0.09 1.64 16 9 H 0.13 2.24 7.73 -2.39 -0.02 2.22 16 10 C 0.50 15.16 5.45 87.66 0.48 15.63 16 11 O -0.58 -22.69 15.94 15.77 0.25 -22.44 16 12 N -0.60 -16.50 2.07 -818.83 -1.69 -18.20 16 13 C 0.12 3.47 6.43 86.36 0.56 4.03 16 14 C -0.12 -4.03 5.36 30.67 0.16 -3.87 16 15 C -0.07 -2.47 2.10 -10.77 -0.02 -2.49 16 16 C 0.02 0.87 3.76 29.85 0.11 0.98 16 17 C -0.60 -32.07 8.39 25.60 0.21 -31.86 16 18 H 0.06 3.07 7.06 -2.91 -0.02 3.05 16 19 C -0.04 -2.47 5.46 84.65 0.46 -2.00 16 20 N -0.95 -58.25 13.65 21.45 0.29 -57.96 16 21 Si 1.11 48.33 29.90 68.60 2.05 50.38 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 25 C -0.12 -3.57 4.92 30.68 0.15 -3.42 16 26 C 0.10 2.37 5.49 86.37 0.47 2.85 16 27 O -0.38 -9.99 10.25 -130.19 -1.33 -11.32 16 28 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.05 8.06 -2.39 -0.02 1.03 16 32 H 0.10 1.18 8.04 -2.39 -0.02 1.17 16 33 H 0.06 1.74 3.49 -2.39 -0.01 1.73 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.05 7.47 -2.39 -0.02 1.03 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.41 7.00 -2.38 -0.02 2.39 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 42 H -0.02 -0.98 8.01 -2.38 -0.02 -0.99 16 43 H 0.25 15.86 7.22 -92.71 -0.67 15.19 16 44 H 0.06 1.86 6.13 -2.39 -0.01 1.85 16 45 H 0.08 2.57 6.91 -2.39 -0.02 2.55 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.11 1.88 4.01 -2.39 -0.01 1.87 16 Total: -1.00 -73.06 350.22 4.84 -68.22 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.04 Total: 16.90 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 4.23 Total: -25.58 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.40 Total: -76.16 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.08 Total: -33.76 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.05 Total: 50.38 kcal Total: -73.06 4.84 -68.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563187229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.837 kcal (2) G-P(sol) polarization free energy of solvation -73.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds