Wall clock time and date at job start Tue Mar 31 2020 07:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.89631 * 2 1 4 4 C 1.54384 * 109.82962 * 239.06664 * 2 1 3 5 5 C 1.55308 * 102.25052 * 219.12533 * 4 2 1 6 6 H 1.08996 * 111.12794 * 276.17206 * 5 4 2 7 7 C 1.52998 * 111.12077 * 152.05038 * 5 4 2 8 8 C 1.54949 * 100.94154 * 34.13454 * 5 4 2 9 9 H 1.08999 * 110.30970 * 82.46729 * 8 5 4 10 10 C 1.50695 * 110.31032 * 204.63924 * 8 5 4 11 11 O 1.21281 * 120.00349 * 89.86074 * 10 8 5 12 12 N 1.34786 * 119.99945 * 269.86452 * 10 8 5 13 13 C 1.46929 * 120.62982 * 4.33116 * 12 10 8 14 14 C 1.53618 * 108.54497 * 126.36679 * 13 12 10 15 15 C 1.53039 * 109.24074 * 54.85749 * 14 13 12 16 16 C 1.53002 * 109.44760 * 178.49780 * 15 14 13 17 17 C 1.50693 * 109.47252 * 295.06011 * 16 15 14 18 18 H 1.08000 * 120.00021 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00236 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99966 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47392 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47442 * 119.99864 * 21 19 17 24 24 H 1.48501 * 109.47387 * 239.99921 * 21 19 17 25 25 C 1.53048 * 109.53800 * 298.50658 * 15 14 13 26 26 C 1.46921 * 120.62892 * 184.60801 * 12 10 8 27 27 O 1.43239 * 109.83153 * 120.93157 * 2 1 3 28 28 H 1.09007 * 109.47253 * 180.93755 * 1 2 3 29 29 H 1.08997 * 109.47262 * 300.93174 * 1 2 3 30 30 H 1.08994 * 109.47540 * 60.93711 * 1 2 3 31 31 H 1.08997 * 110.84559 * 100.93770 * 4 2 1 32 32 H 1.08996 * 110.84511 * 337.31693 * 4 2 1 33 33 H 1.08996 * 109.47546 * 54.07100 * 7 5 4 34 34 H 1.09005 * 109.47203 * 174.07200 * 7 5 4 35 35 H 1.08998 * 109.47671 * 294.06781 * 7 5 4 36 36 H 1.08998 * 109.58645 * 246.20449 * 13 12 10 37 37 H 1.09009 * 109.58247 * 6.62518 * 13 12 10 38 38 H 1.08998 * 109.63451 * 294.86316 * 14 13 12 39 39 H 1.09000 * 109.46136 * 174.73868 * 14 13 12 40 40 H 1.08991 * 109.46402 * 58.53171 * 15 14 13 41 41 H 1.09001 * 109.47167 * 55.06593 * 16 15 14 42 42 H 1.09007 * 109.46742 * 175.05745 * 16 15 14 43 43 H 0.96997 * 120.00651 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.49863 * 301.42156 * 25 15 14 45 45 H 1.09000 * 109.52181 * 181.33387 * 25 15 14 46 46 H 1.08991 * 109.59076 * 353.37542 * 26 12 10 47 47 H 1.08997 * 109.58287 * 113.66148 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0537 -0.7465 -1.2457 5 6 3.2731 -1.5221 -0.6767 6 1 4.1622 -0.8922 -0.6513 7 6 3.5315 -2.8032 -1.4721 8 6 2.7748 -1.8444 0.7546 9 1 2.1402 -2.7305 0.7437 10 6 3.9448 -2.0489 1.6821 11 8 4.4143 -1.1059 2.2831 12 7 4.4695 -3.2799 1.8436 13 6 3.9743 -4.4145 1.0523 14 6 5.1692 -5.0828 0.3556 15 6 6.2187 -5.4587 1.4041 16 6 7.3946 -6.1585 0.7197 17 6 6.9287 -7.4661 0.1331 18 1 5.8971 -7.7680 0.2383 19 6 7.8196 -8.2775 -0.5370 20 7 9.0759 -7.9101 -0.6647 21 14 7.2422 -9.8986 -1.2634 22 1 5.7948 -10.0787 -0.9841 23 1 7.4662 -9.8911 -2.7314 24 1 8.0064 -11.0153 -0.6518 25 6 6.7170 -4.1933 2.1061 26 6 5.5434 -3.5137 2.8187 27 8 2.0159 -0.6926 1.1558 28 1 -0.3634 -1.0276 0.0168 29 1 -0.3633 0.5282 0.8815 30 1 -0.3634 0.4992 -0.8982 31 1 2.3671 -0.0425 -2.0166 32 1 1.3012 -1.4349 -1.6302 33 1 3.6300 -2.5605 -2.5301 34 1 4.4510 -3.2706 -1.1195 35 1 2.6979 -3.4916 -1.3334 36 1 3.4831 -5.1318 1.7098 37 1 3.2665 -4.0570 0.3043 38 1 5.6063 -4.3917 -0.3652 39 1 4.8324 -5.9818 -0.1605 40 1 5.7741 -6.1302 2.1384 41 1 7.7838 -5.5219 -0.0749 42 1 8.1804 -6.3478 1.4511 43 1 9.7026 -8.4806 -1.1364 44 1 7.1394 -3.5106 1.3688 45 1 7.4815 -4.4588 2.8362 46 1 5.8712 -2.5620 3.2365 47 1 5.1769 -4.1571 3.6185 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563187231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:51 Heat of formation + Delta-G solvation = -118.804619 kcal Electronic energy + Delta-G solvation = -25291.286623 eV Core-core repulsion = 21858.355950 eV Total energy + Delta-G solvation = -3432.930673 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.87986 -40.12597 -38.58162 -35.80708 -34.83170 -33.94937 -33.14670 -31.90229 -30.02866 -28.04025 -27.76339 -26.03885 -24.21682 -23.57542 -22.25967 -22.11033 -20.97792 -19.94604 -18.91580 -18.37930 -17.38169 -17.06180 -16.49743 -16.40058 -16.01801 -15.49397 -15.23952 -15.14810 -14.88574 -14.70783 -14.41061 -14.33690 -14.12592 -13.59521 -13.52504 -13.31285 -13.08175 -13.00025 -12.82052 -12.70150 -12.54384 -12.47586 -12.38843 -12.26746 -12.08896 -11.76174 -11.69572 -11.51171 -11.29041 -11.07589 -10.99335 -10.82697 -10.51334 -10.34792 -9.65438 -8.13929 -6.23340 1.39371 1.43173 1.44675 1.56430 1.80111 2.45053 2.87372 3.20334 3.28494 3.43310 3.70574 3.87927 3.93667 3.98089 4.03423 4.13168 4.18362 4.20143 4.33742 4.39114 4.46578 4.50018 4.55780 4.65876 4.74671 4.78276 4.79796 4.89057 4.91404 4.95132 5.01761 5.04900 5.10498 5.23093 5.28302 5.30690 5.34219 5.35301 5.48635 5.55263 5.60415 5.84233 5.91969 5.95313 6.30697 6.36464 6.94090 7.06665 7.45714 8.98309 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.003699 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.604652 B = 7567.975212 C = 8316.738696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.062 3.938 3 H 0.076 0.924 4 C -0.133 4.133 5 C -0.111 4.111 6 H 0.069 0.931 7 C -0.157 4.157 8 C 0.069 3.931 9 H 0.116 0.884 10 C 0.510 3.490 11 O -0.580 6.580 12 N -0.600 5.600 13 C 0.097 3.903 14 C -0.112 4.112 15 C -0.074 4.074 16 C 0.033 3.967 17 C -0.523 4.523 18 H 0.070 0.930 19 C -0.004 4.004 20 N -0.939 5.939 21 Si 0.959 3.041 22 H -0.255 1.255 23 H -0.283 1.283 24 H -0.286 1.286 25 C -0.121 4.121 26 C 0.117 3.883 27 O -0.384 6.384 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.064 0.936 41 H -0.015 1.015 42 H -0.017 1.017 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.605 11.375 -1.984 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.005 3.995 3 H 0.094 0.906 4 C -0.171 4.171 5 C -0.130 4.130 6 H 0.087 0.913 7 C -0.213 4.213 8 C 0.008 3.992 9 H 0.134 0.866 10 C 0.298 3.702 11 O -0.460 6.460 12 N -0.334 5.334 13 C -0.024 4.024 14 C -0.150 4.150 15 C -0.092 4.092 16 C -0.004 4.004 17 C -0.561 4.561 18 H 0.088 0.912 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.785 3.215 22 H -0.178 1.178 23 H -0.209 1.209 24 H -0.212 1.212 25 C -0.159 4.159 26 C -0.005 4.005 27 O -0.303 6.303 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.266 11.883 -1.522 21.844 hybrid contribution 0.931 -0.807 -0.306 1.270 sum -17.335 11.076 -1.828 20.652 Atomic orbital electron populations 1.22108 0.92865 1.03173 1.03118 1.23034 0.95753 0.96193 0.84491 0.90639 1.23288 0.96496 0.99840 0.97431 1.22760 0.99386 0.99179 0.91680 0.91288 1.22075 1.03007 0.95314 1.00918 1.23083 0.90995 0.91758 0.93326 0.86646 1.21036 0.84785 0.82129 0.82214 1.90640 1.63391 1.41808 1.50177 1.48188 1.37053 1.08265 1.39868 1.22416 0.96811 0.87652 0.95538 1.21920 0.95101 1.00490 0.97508 1.21048 0.96415 0.94764 0.96986 1.19015 0.93211 0.94385 0.93799 1.21698 0.96137 1.04449 1.33774 0.91174 1.25967 0.94970 1.02046 0.97124 1.70122 1.04553 1.39323 1.43991 0.85477 0.79150 0.79117 0.77782 1.17804 1.20867 1.21239 1.21902 0.97357 0.97033 0.99588 1.21591 0.87132 1.00862 0.90952 1.88484 1.69459 1.40349 1.32031 0.91627 0.92722 0.89117 0.88039 0.87616 0.90069 0.92510 0.89643 0.89497 0.86969 0.92779 0.90010 0.91757 0.99656 0.99814 0.93142 0.93660 0.91078 0.90608 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.44 71.98 0.68 -1.36 16 2 C 0.06 1.13 4.16 31.06 0.13 1.26 16 3 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.13 -1.82 6.03 31.86 0.19 -1.63 16 5 C -0.11 -2.16 3.10 -9.34 -0.03 -2.19 16 6 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 7 C -0.16 -2.61 7.89 71.98 0.57 -2.05 16 8 C 0.07 1.64 2.78 30.51 0.08 1.72 16 9 H 0.12 2.14 6.38 -2.39 -0.02 2.13 16 10 C 0.51 15.98 6.94 87.65 0.61 16.59 16 11 O -0.58 -23.23 16.14 13.90 0.22 -23.01 16 12 N -0.60 -17.12 2.97 -818.07 -2.43 -19.55 16 13 C 0.10 2.30 5.46 86.51 0.47 2.78 16 14 C -0.11 -3.50 4.74 30.82 0.15 -3.36 16 15 C -0.07 -2.74 2.10 -10.76 -0.02 -2.77 16 16 C 0.03 1.65 4.45 29.85 0.13 1.78 16 17 C -0.52 -27.61 8.39 25.60 0.21 -27.40 16 18 H 0.07 3.45 7.06 -2.91 -0.02 3.43 16 19 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 20 N -0.94 -56.23 13.29 21.45 0.28 -55.95 16 21 Si 0.96 42.44 29.54 68.60 2.03 44.46 16 22 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 C -0.12 -4.09 5.36 30.68 0.16 -3.93 16 26 C 0.12 3.50 6.44 86.37 0.56 4.05 16 27 O -0.38 -10.29 10.39 -132.05 -1.37 -11.66 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 1.00 7.74 -2.39 -0.02 0.99 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.22 4.72 -2.38 -0.01 1.21 16 35 H 0.08 1.07 6.94 -2.39 -0.02 1.05 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.11 2.06 2.82 -2.38 -0.01 2.05 16 38 H 0.05 1.78 6.35 -2.39 -0.02 1.77 16 39 H 0.08 2.64 6.91 -2.39 -0.02 2.62 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 41 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 42 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 43 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.08 2.45 7.00 -2.39 -0.02 2.43 16 47 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -71.56 354.49 4.04 -67.52 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.94 Total: 14.44 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 4.36 Total: -16.25 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -2.14 Total: -75.50 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.15 Total: -34.67 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -71.56 4.04 -67.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563187231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.283 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds