Wall clock time and date at job start Tue Mar 31 2020 07:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.50702 * 119.99703 * 2 1 4 4 C 1.30999 * 119.99718 * 179.97438 * 2 1 3 5 5 C 1.50692 * 120.00224 * 354.06205 * 4 2 1 6 6 C 1.52998 * 109.47118 * 234.57305 * 5 4 2 7 7 C 1.53002 * 109.47247 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47111 * 305.00151 * 7 6 5 9 9 C 1.52995 * 109.47286 * 65.00130 * 7 6 5 10 10 C 1.53004 * 109.47351 * 185.00100 * 7 6 5 11 11 C 1.50691 * 109.47365 * 174.99749 * 10 7 6 12 12 O 1.21285 * 120.00125 * 0.02562 * 11 10 7 13 13 N 1.34777 * 120.00315 * 179.97438 * 11 10 7 14 14 C 1.47577 * 134.49443 * 179.97438 * 13 11 10 15 15 C 1.53943 * 86.11567 * 155.35916 * 14 13 11 16 16 O 1.42905 * 113.74281 * 269.15083 * 15 14 13 17 17 C 1.50705 * 113.74290 * 137.95645 * 15 14 13 18 18 H 1.07999 * 119.99770 * 17.10991 * 17 15 14 19 19 C 1.37879 * 119.99896 * 197.11495 * 17 15 14 20 20 N 1.31514 * 119.99552 * 193.82527 * 19 17 15 21 21 Si 1.86800 * 120.00175 * 13.82844 * 19 17 15 22 22 H 1.48502 * 109.46865 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.47099 * 299.99922 * 21 19 17 24 24 H 1.48501 * 109.47045 * 60.00050 * 21 19 17 25 25 C 1.47814 * 134.45149 * 359.86729 * 13 11 10 26 26 H 1.08998 * 109.47274 * 266.16803 * 1 2 3 27 27 H 1.08998 * 109.46698 * 26.17440 * 1 2 3 28 28 H 1.08998 * 109.46488 * 146.16774 * 1 2 3 29 29 H 1.08995 * 109.46632 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46739 * 299.99111 * 3 2 1 31 31 H 1.08993 * 109.47090 * 59.99367 * 3 2 1 32 32 H 1.08005 * 119.99533 * 174.06313 * 4 2 1 33 33 H 1.09006 * 109.47118 * 114.57723 * 5 4 2 34 34 H 1.09004 * 109.47220 * 354.57571 * 5 4 2 35 35 H 1.08999 * 109.47328 * 59.99828 * 6 5 4 36 36 H 1.09004 * 109.47293 * 300.00222 * 6 5 4 37 37 H 1.08994 * 109.47276 * 59.99900 * 9 7 6 38 38 H 1.08999 * 109.47037 * 180.02562 * 9 7 6 39 39 H 1.09009 * 109.46951 * 299.99964 * 9 7 6 40 40 H 1.08998 * 109.47074 * 54.99886 * 10 7 6 41 41 H 1.09006 * 109.46776 * 295.00183 * 10 7 6 42 42 H 1.09002 * 113.77275 * 41.06158 * 14 13 11 43 43 H 1.08998 * 113.77033 * 269.66188 * 14 13 11 44 44 H 0.96698 * 113.99759 * 174.39319 * 16 15 14 45 45 H 0.97001 * 120.00443 * 354.91872 * 20 19 17 46 46 H 1.09005 * 113.76915 * 90.38514 * 25 13 11 47 47 H 1.08990 * 113.83928 * 318.91601 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4146 -2.4360 0.1361 6 6 1.9892 -3.2344 1.3080 7 6 1.2307 -4.5561 1.4453 8 1 0.1635 -4.3546 1.5383 9 6 1.4809 -5.4186 0.2067 10 6 1.7201 -5.2980 2.6907 11 6 0.8900 -6.5389 2.8949 12 8 -0.0048 -6.8042 2.1202 13 7 1.1423 -7.3546 3.9377 14 6 0.5522 -8.6135 4.4325 15 6 1.9192 -8.8731 5.0912 16 8 2.8278 -9.6016 4.2630 17 6 1.8236 -9.4289 6.4887 18 1 0.8976 -9.8641 6.8346 19 6 2.9182 -9.3818 7.3257 20 7 2.9326 -10.0956 8.4302 21 14 4.3807 -8.3040 6.8911 22 1 5.4191 -8.4300 7.9452 23 1 4.9445 -8.7369 5.5873 24 1 3.9413 -6.8887 6.7950 25 6 2.1231 -7.3478 5.0435 26 1 -0.3634 -0.0687 1.0253 27 1 -0.3633 0.9223 -0.4533 28 1 -0.3632 -0.8537 -0.5722 29 1 3.3321 1.1060 0.0005 30 1 1.9973 1.8766 -0.8901 31 1 1.9971 1.8767 0.8899 32 1 3.2377 -1.1370 -0.0962 33 1 1.5199 -3.0129 -0.7828 34 1 0.3595 -2.2318 0.3181 35 1 1.8841 -2.6576 2.2269 36 1 3.0443 -3.4385 1.1260 37 1 2.5480 -5.6201 0.1136 38 1 0.9402 -6.3600 0.3043 39 1 1.1321 -4.8901 -0.6806 40 1 1.6240 -4.6492 3.5613 41 1 2.7655 -5.5776 2.5597 42 1 0.3034 -9.3224 3.6428 43 1 -0.2587 -8.4678 5.1461 44 1 3.7146 -9.6928 4.6376 45 1 2.1454 -10.5974 8.6937 46 1 1.7743 -6.8298 5.9370 47 1 3.1262 -7.0478 4.7408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563188158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:51 Heat of formation + Delta-G solvation = -78.105512 kcal Electronic energy + Delta-G solvation = -23908.284323 eV Core-core repulsion = 20477.118497 eV Total energy + Delta-G solvation = -3431.165827 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42207 -39.64528 -38.30106 -36.43788 -35.93926 -34.64423 -32.18240 -30.80000 -28.74564 -28.62100 -27.40208 -27.14583 -26.40962 -23.74657 -21.80345 -20.89154 -20.04884 -19.87550 -18.68172 -18.06216 -17.51387 -17.02370 -16.50937 -16.35653 -15.95611 -15.55170 -15.28321 -15.13159 -14.90619 -14.75267 -14.48130 -14.05253 -13.95434 -13.86036 -13.66665 -13.24405 -13.17794 -12.90613 -12.81425 -12.69415 -12.42746 -12.40643 -12.25284 -12.14633 -11.89802 -11.74444 -11.67665 -11.46322 -11.34862 -11.27481 -10.94558 -10.77522 -10.30727 -9.64749 -9.48275 -8.82271 -6.59111 1.32593 1.43240 1.51863 1.64346 1.66583 1.91952 2.44821 2.91477 3.27405 3.59681 3.77067 3.80488 3.94799 3.98943 4.13080 4.27403 4.33054 4.37332 4.38906 4.52727 4.58640 4.60331 4.64527 4.66604 4.71332 4.75370 4.81241 4.84173 4.87167 4.92630 4.96104 4.98893 5.01031 5.12969 5.15521 5.19785 5.27083 5.31461 5.51793 5.55463 5.62863 5.86796 5.90827 6.11492 6.39950 6.79073 6.95759 7.15534 7.27841 8.52373 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023234 B = 0.002920 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.817131 B = 9588.071426 C =10228.235808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.148 4.148 3 C -0.116 4.116 4 C -0.169 4.169 5 C -0.095 4.095 6 C -0.098 4.098 7 C -0.069 4.069 8 H 0.060 0.940 9 C -0.150 4.150 10 C -0.126 4.126 11 C 0.523 3.477 12 O -0.587 6.587 13 N -0.637 5.637 14 C 0.121 3.879 15 C 0.190 3.810 16 O -0.574 6.574 17 C -0.622 4.622 18 H 0.029 0.971 19 C -0.011 4.011 20 N -0.921 5.921 21 Si 1.072 2.928 22 H -0.289 1.289 23 H -0.245 1.245 24 H -0.231 1.231 25 C 0.071 3.929 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.374 0.626 45 H 0.256 0.744 46 H 0.102 0.898 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 21.339 -14.431 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 C -0.173 4.173 4 C -0.187 4.187 5 C -0.131 4.131 6 C -0.135 4.135 7 C -0.088 4.088 8 H 0.079 0.921 9 C -0.207 4.207 10 C -0.165 4.165 11 C 0.315 3.685 12 O -0.469 6.469 13 N -0.371 5.371 14 C -0.002 4.002 15 C 0.149 3.851 16 O -0.384 6.384 17 C -0.660 4.660 18 H 0.047 0.953 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.891 3.109 22 H -0.216 1.216 23 H -0.170 1.170 24 H -0.155 1.155 25 C -0.051 4.051 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.225 0.775 45 H 0.066 0.934 46 H 0.120 0.880 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.756 21.719 -14.902 26.484 hybrid contribution -1.676 -1.365 0.471 2.212 sum 1.080 20.354 -14.431 24.975 Atomic orbital electron populations 1.20885 0.92302 1.02565 1.02149 1.21860 0.96252 0.95639 1.01006 1.20850 0.99463 0.94606 1.02381 1.22757 0.99721 0.93725 1.02522 1.20771 0.99519 0.94146 0.98711 1.21481 0.99845 0.93517 0.98687 1.20850 0.99950 0.94888 0.93074 0.92117 1.21935 1.01333 0.99843 0.97616 1.21782 1.00394 0.92968 1.01385 1.21192 0.84020 0.84396 0.78882 1.90601 1.35069 1.75347 1.45857 1.50233 1.36132 1.24882 1.25834 1.23126 0.96845 0.84217 0.96000 1.20389 0.88109 0.87973 0.88666 1.86363 1.25270 1.77527 1.49197 1.22296 1.00579 1.44903 0.98229 0.95271 1.27425 1.04175 0.96158 0.93369 1.70956 1.30409 1.26977 1.27141 0.83860 0.72640 0.77183 0.77247 1.21572 1.16962 1.15466 1.24514 0.93249 0.98966 0.88381 0.91634 0.91300 0.91758 0.91847 0.91307 0.91194 0.86991 0.91130 0.91377 0.91362 0.90861 0.92417 0.94084 0.91666 0.87198 0.87521 0.92102 0.89053 0.77512 0.93431 0.87988 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.97 71.24 0.64 -1.03 16 2 C -0.15 -2.17 6.05 -16.48 -0.10 -2.27 16 3 C -0.12 -1.34 10.10 71.24 0.72 -0.62 16 4 C -0.17 -2.62 9.11 25.65 0.23 -2.38 16 5 C -0.09 -1.55 5.02 29.85 0.15 -1.40 16 6 C -0.10 -1.67 4.66 30.59 0.14 -1.53 16 7 C -0.07 -1.57 2.04 -10.79 -0.02 -1.59 16 8 H 0.06 1.58 7.96 -2.39 -0.02 1.57 16 9 C -0.15 -3.68 8.69 71.98 0.63 -3.06 16 10 C -0.13 -3.15 4.92 29.85 0.15 -3.01 16 11 C 0.52 18.73 7.77 87.65 0.68 19.41 16 12 O -0.59 -24.75 14.69 -3.05 -0.04 -24.80 16 13 N -0.64 -24.27 3.61 -839.69 -3.03 -27.30 16 14 C 0.12 5.15 8.23 86.49 0.71 5.86 16 15 C 0.19 8.38 1.07 -10.87 -0.01 8.36 16 16 O -0.57 -25.50 13.47 -148.98 -2.01 -27.51 16 17 C -0.62 -32.42 9.04 25.60 0.23 -32.19 16 18 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 19 C -0.01 -0.55 5.44 84.66 0.46 -0.09 16 20 N -0.92 -53.05 13.70 21.45 0.29 -52.76 16 21 Si 1.07 41.04 24.58 68.60 1.69 42.73 16 22 H -0.29 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.24 -7.98 5.79 99.48 0.58 -7.41 16 24 H -0.23 -7.35 6.47 99.48 0.64 -6.71 16 25 C 0.07 2.58 5.40 86.45 0.47 3.05 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 28 H 0.06 0.91 6.60 -2.39 -0.02 0.89 16 29 H 0.06 0.68 7.79 -2.39 -0.02 0.66 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 1.58 7.85 -2.91 -0.02 1.56 16 33 H 0.07 1.17 6.56 -2.38 -0.02 1.16 16 34 H 0.07 1.16 5.72 -2.39 -0.01 1.15 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.30 5.95 -2.39 -0.01 1.29 16 39 H 0.06 1.38 6.57 -2.38 -0.02 1.37 16 40 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.09 3.78 8.09 -2.39 -0.02 3.76 16 44 H 0.37 14.90 6.01 -74.06 -0.44 14.46 16 45 H 0.26 15.17 8.73 -92.71 -0.81 14.36 16 46 H 0.10 3.56 8.00 -2.38 -0.02 3.54 16 47 H 0.09 2.90 6.86 -2.39 -0.02 2.89 16 Total: -1.00 -65.36 368.04 2.24 -63.12 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: 0.26 Total: 39.02 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 5.08 Total: -12.51 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.74 Total: -80.06 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -2.05 Total: -52.31 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.69 Total: 42.73 kcal Total: -65.36 2.24 -63.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563188158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.982 kcal (2) G-P(sol) polarization free energy of solvation -65.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds