Wall clock time and date at job start Tue Mar 31 2020 07:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50694 * 120.00282 * 2 1 4 4 C 1.30995 * 119.99688 * 180.02562 * 2 1 3 5 5 C 1.50708 * 120.00011 * 5.26751 * 4 2 1 6 6 C 1.53001 * 109.46973 * 125.13584 * 5 4 2 7 7 C 1.52998 * 109.46819 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47584 * 55.00092 * 7 6 5 9 9 C 1.52997 * 109.47183 * 294.99553 * 7 6 5 10 10 C 1.53003 * 109.47027 * 174.99640 * 7 6 5 11 11 C 1.50699 * 109.47154 * 184.99844 * 10 7 6 12 12 O 1.21278 * 120.00170 * 0.02562 * 11 10 7 13 13 N 1.34776 * 119.99777 * 179.72636 * 11 10 7 14 14 C 1.47070 * 136.06073 * 359.90374 * 13 11 10 15 15 C 1.53235 * 88.08480 * 207.20652 * 14 13 11 16 16 O 1.42899 * 114.01923 * 87.71159 * 15 14 13 17 17 C 1.50705 * 114.50418 * 220.45685 * 15 14 13 18 18 H 1.07996 * 119.99866 * 93.84181 * 17 15 14 19 19 C 1.37877 * 119.99806 * 273.84141 * 17 15 14 20 20 N 1.31513 * 120.00268 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99746 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47118 * 60.00395 * 21 19 17 23 23 H 1.48501 * 109.47147 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47359 * 300.00411 * 21 19 17 25 25 C 1.47070 * 136.05846 * 180.27767 * 13 11 10 26 26 H 1.08999 * 109.47278 * 235.16798 * 1 2 3 27 27 H 1.09005 * 109.46579 * 355.16028 * 1 2 3 28 28 H 1.08997 * 109.47373 * 115.16165 * 1 2 3 29 29 H 1.09000 * 109.47701 * 240.00535 * 3 2 1 30 30 H 1.09008 * 109.46943 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47048 * 119.99860 * 3 2 1 32 32 H 1.08000 * 120.00322 * 185.27353 * 4 2 1 33 33 H 1.08994 * 109.47132 * 5.13138 * 5 4 2 34 34 H 1.08999 * 109.46847 * 245.13036 * 5 4 2 35 35 H 1.08994 * 109.47555 * 59.99813 * 6 5 4 36 36 H 1.09006 * 109.47074 * 299.99792 * 6 5 4 37 37 H 1.09006 * 109.47067 * 300.00057 * 9 7 6 38 38 H 1.08994 * 109.47153 * 60.00181 * 9 7 6 39 39 H 1.09005 * 109.47335 * 180.02562 * 9 7 6 40 40 H 1.09002 * 109.47255 * 64.99511 * 10 7 6 41 41 H 1.09003 * 109.47325 * 304.99866 * 10 7 6 42 42 H 1.09003 * 113.46436 * 321.93792 * 14 13 11 43 43 H 1.08998 * 113.46649 * 92.37312 * 14 13 11 44 44 H 0.96701 * 113.99649 * 86.39305 * 16 15 14 45 45 H 0.96995 * 120.00128 * 180.02562 * 20 19 17 46 46 H 1.09003 * 113.46647 * 267.62225 * 25 13 11 47 47 H 1.09005 * 113.46556 * 38.05848 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4131 -2.4368 -0.1209 6 6 1.9710 -3.2388 -1.2984 7 6 1.2103 -4.5607 -1.4210 8 1 0.1420 -4.3592 -1.4996 9 6 1.4777 -5.4196 -0.1834 10 6 1.6819 -5.3064 -2.6710 11 6 0.8486 -6.5478 -2.8596 12 8 -0.0358 -6.8100 -2.0722 13 7 1.0821 -7.3634 -3.9068 14 6 2.0182 -7.3893 -5.0409 15 6 0.9690 -8.1873 -5.8223 16 8 0.0265 -7.3758 -6.5261 17 6 1.5312 -9.3083 -6.6580 18 1 1.5819 -10.3090 -6.2552 19 6 1.9807 -9.0562 -7.9369 20 7 1.9194 -7.8375 -8.4272 21 14 2.6781 -10.4457 -8.9725 22 1 1.6425 -11.4939 -9.1564 23 1 3.0888 -9.9170 -10.2981 24 1 3.8580 -11.0305 -8.2862 25 6 0.5087 -8.6159 -4.4221 26 1 -0.3634 -0.5870 0.8435 27 1 -0.3633 1.0241 0.0867 28 1 -0.3634 -0.4369 -0.9301 29 1 2.8872 1.3629 -0.8900 30 1 1.5522 2.1336 0.0005 31 1 2.8872 1.3627 0.8900 32 1 3.2385 -1.1366 0.0855 33 1 0.3555 -2.2336 -0.2882 34 1 1.5320 -3.0105 0.7982 35 1 3.0287 -3.4420 -1.1311 36 1 1.8522 -2.6651 -2.2176 37 1 2.5460 -5.6211 -0.1049 38 1 1.1417 -4.8884 0.7070 39 1 0.9361 -6.3615 -0.2710 40 1 2.7289 -5.5859 -2.5539 41 1 1.5736 -4.6602 -3.5421 42 1 2.2155 -6.4041 -5.4634 43 1 2.9296 -7.9519 -4.8386 44 1 0.3195 -7.1076 -7.4077 45 1 2.2352 -7.6602 -9.3270 46 1 1.0139 -9.5086 -4.0534 47 1 -0.5751 -8.6715 -4.3196 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563188159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:55 Heat of formation + Delta-G solvation = -63.979547 kcal Electronic energy + Delta-G solvation = -23726.964987 eV Core-core repulsion = 20296.411708 eV Total energy + Delta-G solvation = -3430.553279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.68265 -38.11985 -37.24992 -35.36279 -33.98354 -32.19693 -31.19944 -29.23781 -28.01706 -27.18364 -26.49921 -25.15438 -25.00766 -22.82932 -20.34011 -19.68682 -18.18472 -17.92844 -17.40283 -16.23637 -15.65713 -15.46117 -15.16230 -14.94527 -14.65723 -14.30345 -14.15682 -14.03901 -13.55479 -13.03857 -12.98900 -12.69624 -12.68314 -12.47915 -12.21461 -12.08456 -11.94736 -11.75920 -11.62845 -11.55933 -11.22601 -11.05776 -10.98804 -10.94392 -10.67767 -10.52344 -10.49412 -10.43894 -10.26031 -9.55963 -9.10469 -8.79761 -8.74075 -8.37340 -7.81308 -6.41118 -4.51541 2.00926 3.15180 3.21149 3.22912 3.27538 3.61869 4.17189 4.58190 4.74940 4.81268 4.93085 4.95856 4.97308 5.16655 5.25221 5.31433 5.34911 5.51089 5.52193 5.59206 5.63145 5.67204 5.68840 5.74789 5.79672 5.80769 5.86970 5.92981 5.97528 6.13006 6.14026 6.20791 6.24216 6.42486 6.49593 6.50913 6.57304 6.65564 6.67523 6.70807 6.78303 7.11392 7.62055 7.80357 8.51040 8.58537 8.83513 9.19885 9.48756 10.65497 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.002611 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.998823 B =10721.836869 C =11242.650236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.142 4.142 3 C -0.116 4.116 4 C -0.160 4.160 5 C -0.095 4.095 6 C -0.108 4.108 7 C -0.073 4.073 8 H 0.076 0.924 9 C -0.152 4.152 10 C -0.129 4.129 11 C 0.535 3.465 12 O -0.563 6.563 13 N -0.637 5.637 14 C 0.072 3.928 15 C 0.239 3.761 16 O -0.572 6.572 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.106 3.894 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.393 0.607 45 H 0.274 0.726 46 H 0.083 0.917 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 12.279 12.231 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.142 4.142 3 C -0.172 4.172 4 C -0.178 4.178 5 C -0.132 4.132 6 C -0.146 4.146 7 C -0.092 4.092 8 H 0.095 0.905 9 C -0.209 4.209 10 C -0.169 4.169 11 C 0.325 3.675 12 O -0.444 6.444 13 N -0.370 5.370 14 C -0.051 4.051 15 C 0.197 3.803 16 O -0.385 6.385 17 C -0.572 4.572 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.017 4.017 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.250 0.750 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.260 12.327 13.181 18.187 hybrid contribution 1.007 -0.517 -1.156 1.618 sum 3.267 11.809 12.025 17.167 Atomic orbital electron populations 1.20871 0.92438 1.01945 1.02157 1.21610 0.95833 0.95001 1.01796 1.20832 0.99779 0.94847 1.01790 1.22660 0.99431 0.93994 1.01751 1.20792 0.99634 0.93793 0.98999 1.21576 0.99725 0.95161 0.98090 1.20876 1.00588 0.93814 0.93954 0.90515 1.21985 1.00961 1.01349 0.96649 1.21637 1.00160 0.95317 0.99775 1.20086 0.84329 0.84315 0.78764 1.90587 1.34305 1.75520 1.43969 1.49766 1.37327 1.24799 1.25083 1.24132 0.95628 1.01344 0.83999 1.19495 0.85093 0.88262 0.87409 1.86047 1.45518 1.71239 1.35699 1.21399 1.41261 0.95273 0.99225 0.91010 1.25082 0.94283 0.96182 0.97534 1.69254 1.47309 1.19601 1.17766 0.86364 0.79459 0.81580 0.78976 1.19821 1.20982 1.19880 1.23302 0.99143 0.86303 0.92931 0.91667 0.92397 0.91403 0.91741 0.92190 0.91967 0.87617 0.91110 0.90978 0.91967 0.91939 0.93613 0.93062 0.90612 0.89572 0.89330 0.91812 0.90201 0.75018 0.91524 0.89877 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.55 36.01 0.31 -0.68 16 2 C -0.14 -1.30 6.05 -101.06 -0.61 -1.91 16 3 C -0.12 -0.87 10.05 36.00 0.36 -0.50 16 4 C -0.16 -1.53 9.15 -36.02 -0.33 -1.86 16 5 C -0.10 -0.96 5.17 -27.88 -0.14 -1.11 16 6 C -0.11 -1.19 4.66 -26.73 -0.12 -1.32 16 7 C -0.07 -1.00 2.04 -90.62 -0.18 -1.18 16 8 H 0.08 1.16 7.95 -51.93 -0.41 0.74 16 9 C -0.15 -2.05 8.69 37.16 0.32 -1.73 16 10 C -0.13 -1.99 5.00 -27.88 -0.14 -2.13 16 11 C 0.53 10.72 7.79 -10.99 -0.09 10.63 16 12 O -0.56 -12.61 14.74 5.56 0.08 -12.53 16 13 N -0.64 -13.50 3.69 -185.38 -0.68 -14.19 16 14 C 0.07 1.54 7.83 -8.65 -0.07 1.47 16 15 C 0.24 5.74 1.57 -91.39 -0.14 5.60 16 16 O -0.57 -14.81 13.53 -35.23 -0.48 -15.29 16 17 C -0.53 -13.28 8.70 -34.44 -0.30 -13.58 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 20 N -0.90 -22.59 11.01 55.43 0.61 -21.98 16 21 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 C 0.11 2.33 8.03 -8.51 -0.07 2.26 16 26 H 0.06 0.53 7.84 -51.93 -0.41 0.13 16 27 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 28 H 0.07 0.59 7.67 -51.93 -0.40 0.20 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.40 7.71 -51.92 -0.40 0.00 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.95 8.05 -52.49 -0.42 0.53 16 33 H 0.07 0.72 5.86 -51.93 -0.30 0.42 16 34 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.60 6.57 -51.93 -0.34 0.26 16 39 H 0.08 1.24 5.95 -51.93 -0.31 0.93 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.08 1.62 8.10 -51.93 -0.42 1.19 16 44 H 0.39 10.25 6.33 45.56 0.29 10.54 16 45 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 46 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 47 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -27.50 376.32 -8.76 -36.26 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -7.64 Total: 12.17 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.30 Total: -4.35 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.07 Total: -36.16 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.39 Total: -27.81 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.50 -8.76 -36.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563188159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.722 kcal (2) G-P(sol) polarization free energy of solvation -27.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds