Wall clock time and date at job start Tue Mar 31 2020 07:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50694 * 120.00282 * 2 1 4 4 C 1.30995 * 119.99688 * 180.02562 * 2 1 3 5 5 C 1.50708 * 120.00011 * 5.26751 * 4 2 1 6 6 C 1.53001 * 109.46973 * 125.13584 * 5 4 2 7 7 C 1.52998 * 109.46819 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47584 * 55.00092 * 7 6 5 9 9 C 1.52997 * 109.47183 * 294.99553 * 7 6 5 10 10 C 1.53003 * 109.47027 * 174.99640 * 7 6 5 11 11 C 1.50699 * 109.47154 * 184.99844 * 10 7 6 12 12 O 1.21278 * 120.00170 * 0.02562 * 11 10 7 13 13 N 1.34776 * 119.99777 * 179.72636 * 11 10 7 14 14 C 1.47070 * 136.06073 * 359.90374 * 13 11 10 15 15 C 1.53235 * 88.08480 * 207.20652 * 14 13 11 16 16 O 1.42899 * 114.01923 * 87.71159 * 15 14 13 17 17 C 1.50705 * 114.50418 * 220.45685 * 15 14 13 18 18 H 1.07996 * 119.99866 * 93.84181 * 17 15 14 19 19 C 1.37877 * 119.99806 * 273.84141 * 17 15 14 20 20 N 1.31513 * 120.00268 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99746 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47118 * 60.00395 * 21 19 17 23 23 H 1.48501 * 109.47147 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47359 * 300.00411 * 21 19 17 25 25 C 1.47070 * 136.05846 * 180.27767 * 13 11 10 26 26 H 1.08999 * 109.47278 * 235.16798 * 1 2 3 27 27 H 1.09005 * 109.46579 * 355.16028 * 1 2 3 28 28 H 1.08997 * 109.47373 * 115.16165 * 1 2 3 29 29 H 1.09000 * 109.47701 * 240.00535 * 3 2 1 30 30 H 1.09008 * 109.46943 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47048 * 119.99860 * 3 2 1 32 32 H 1.08000 * 120.00322 * 185.27353 * 4 2 1 33 33 H 1.08994 * 109.47132 * 5.13138 * 5 4 2 34 34 H 1.08999 * 109.46847 * 245.13036 * 5 4 2 35 35 H 1.08994 * 109.47555 * 59.99813 * 6 5 4 36 36 H 1.09006 * 109.47074 * 299.99792 * 6 5 4 37 37 H 1.09006 * 109.47067 * 300.00057 * 9 7 6 38 38 H 1.08994 * 109.47153 * 60.00181 * 9 7 6 39 39 H 1.09005 * 109.47335 * 180.02562 * 9 7 6 40 40 H 1.09002 * 109.47255 * 64.99511 * 10 7 6 41 41 H 1.09003 * 109.47325 * 304.99866 * 10 7 6 42 42 H 1.09003 * 113.46436 * 321.93792 * 14 13 11 43 43 H 1.08998 * 113.46649 * 92.37312 * 14 13 11 44 44 H 0.96701 * 113.99649 * 86.39305 * 16 15 14 45 45 H 0.96995 * 120.00128 * 180.02562 * 20 19 17 46 46 H 1.09003 * 113.46647 * 267.62225 * 25 13 11 47 47 H 1.09005 * 113.46556 * 38.05848 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4131 -2.4368 -0.1209 6 6 1.9710 -3.2388 -1.2984 7 6 1.2103 -4.5607 -1.4210 8 1 0.1420 -4.3592 -1.4996 9 6 1.4777 -5.4196 -0.1834 10 6 1.6819 -5.3064 -2.6710 11 6 0.8486 -6.5478 -2.8596 12 8 -0.0358 -6.8100 -2.0722 13 7 1.0821 -7.3634 -3.9068 14 6 2.0182 -7.3893 -5.0409 15 6 0.9690 -8.1873 -5.8223 16 8 0.0265 -7.3758 -6.5261 17 6 1.5312 -9.3083 -6.6580 18 1 1.5819 -10.3090 -6.2552 19 6 1.9807 -9.0562 -7.9369 20 7 1.9194 -7.8375 -8.4272 21 14 2.6781 -10.4457 -8.9725 22 1 1.6425 -11.4939 -9.1564 23 1 3.0888 -9.9170 -10.2981 24 1 3.8580 -11.0305 -8.2862 25 6 0.5087 -8.6159 -4.4221 26 1 -0.3634 -0.5870 0.8435 27 1 -0.3633 1.0241 0.0867 28 1 -0.3634 -0.4369 -0.9301 29 1 2.8872 1.3629 -0.8900 30 1 1.5522 2.1336 0.0005 31 1 2.8872 1.3627 0.8900 32 1 3.2385 -1.1366 0.0855 33 1 0.3555 -2.2336 -0.2882 34 1 1.5320 -3.0105 0.7982 35 1 3.0287 -3.4420 -1.1311 36 1 1.8522 -2.6651 -2.2176 37 1 2.5460 -5.6211 -0.1049 38 1 1.1417 -4.8884 0.7070 39 1 0.9361 -6.3615 -0.2710 40 1 2.7289 -5.5859 -2.5539 41 1 1.5736 -4.6602 -3.5421 42 1 2.2155 -6.4041 -5.4634 43 1 2.9296 -7.9519 -4.8386 44 1 0.3195 -7.1076 -7.4077 45 1 2.2352 -7.6602 -9.3270 46 1 1.0139 -9.5086 -4.0534 47 1 -0.5751 -8.6715 -4.3196 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563188159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:54 Heat of formation + Delta-G solvation = -78.944229 kcal Electronic energy + Delta-G solvation = -23727.613904 eV Core-core repulsion = 20296.411708 eV Total energy + Delta-G solvation = -3431.202196 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34293 -39.56487 -38.27673 -36.42187 -35.85102 -34.12284 -32.19027 -30.76101 -28.69418 -28.58512 -27.36514 -26.89627 -26.64966 -23.79236 -21.92170 -20.87930 -19.85290 -19.21800 -18.67082 -17.84906 -17.24473 -16.80057 -16.58847 -16.27885 -15.98680 -15.47854 -15.37199 -15.07297 -14.82263 -14.53074 -14.18950 -14.02825 -13.82609 -13.67978 -13.40534 -13.30008 -13.26427 -12.82454 -12.77060 -12.75336 -12.66223 -12.47095 -12.23256 -12.22350 -12.15578 -11.90163 -11.69584 -11.49929 -11.37536 -11.30200 -10.83132 -10.58770 -10.20153 -9.55283 -9.47999 -8.27243 -6.44435 1.30907 1.48748 1.50720 1.58086 1.68450 2.01707 2.41122 2.94662 3.49151 3.77425 3.79955 3.93844 3.99652 4.11763 4.16238 4.28400 4.34635 4.47928 4.51537 4.60076 4.62677 4.63856 4.72125 4.74571 4.77816 4.81184 4.85708 4.93148 4.93896 4.94891 4.97376 4.98657 5.12397 5.14640 5.18659 5.24225 5.26754 5.30793 5.50347 5.55238 5.72872 5.85537 5.91502 6.09132 6.61196 6.93492 7.20169 7.29971 7.49090 8.78722 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.002611 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.998823 B =10721.836869 C =11242.650236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 C -0.116 4.116 4 C -0.171 4.171 5 C -0.092 4.092 6 C -0.098 4.098 7 C -0.069 4.069 8 H 0.056 0.944 9 C -0.148 4.148 10 C -0.122 4.122 11 C 0.526 3.474 12 O -0.590 6.590 13 N -0.641 5.641 14 C 0.088 3.912 15 C 0.217 3.783 16 O -0.587 6.587 17 C -0.553 4.553 18 H 0.074 0.926 19 C 0.032 3.968 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.266 1.266 25 C 0.105 3.895 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.389 0.611 45 H 0.277 0.723 46 H 0.101 0.899 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 12.972 12.685 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C -0.173 4.173 4 C -0.189 4.189 5 C -0.129 4.129 6 C -0.136 4.136 7 C -0.088 4.088 8 H 0.075 0.925 9 C -0.205 4.205 10 C -0.161 4.161 11 C 0.319 3.681 12 O -0.473 6.473 13 N -0.374 5.374 14 C -0.035 4.035 15 C 0.176 3.824 16 O -0.401 6.401 17 C -0.591 4.591 18 H 0.092 0.908 19 C -0.169 4.169 20 N -0.558 5.558 21 Si 0.796 3.204 22 H -0.201 1.201 23 H -0.208 1.208 24 H -0.191 1.191 25 C -0.018 4.018 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.245 0.755 45 H 0.087 0.913 46 H 0.119 0.881 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.866 13.029 13.650 19.262 hybrid contribution 0.431 -0.722 -1.272 1.524 sum 4.297 12.307 12.379 17.977 Atomic orbital electron populations 1.20903 0.92291 1.02631 1.01839 1.21880 0.96234 0.95673 1.00889 1.20864 0.99962 0.94234 1.02236 1.22681 0.99789 0.93729 1.02710 1.20735 0.99407 0.94152 0.98619 1.21481 0.99971 0.93563 0.98568 1.20844 0.99772 0.94982 0.93162 0.92529 1.21920 1.01436 0.99851 0.97283 1.21709 1.00353 0.93115 1.00933 1.20984 0.84291 0.85047 0.77814 1.90578 1.35637 1.76254 1.44799 1.49861 1.37277 1.24724 1.25554 1.23911 0.95274 1.01011 0.83313 1.19786 0.85955 0.88738 0.87912 1.86032 1.46669 1.71714 1.35635 1.21626 1.41792 0.95644 1.00010 0.90805 1.25776 0.94472 0.98211 0.98400 1.69315 1.47542 1.20881 1.18069 0.85406 0.78774 0.78798 0.77456 1.20052 1.20767 1.19109 1.23302 0.98489 0.87668 0.92375 0.91644 0.91308 0.92021 0.91514 0.91411 0.91238 0.86923 0.91651 0.90755 0.90695 0.91964 0.92146 0.91513 0.93848 0.87451 0.88673 0.91805 0.88826 0.75500 0.91316 0.88112 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 8.55 71.24 0.61 -1.26 16 2 C -0.15 -2.43 6.05 -16.48 -0.10 -2.53 16 3 C -0.12 -1.51 10.05 71.23 0.72 -0.80 16 4 C -0.17 -2.96 9.15 25.65 0.23 -2.73 16 5 C -0.09 -1.71 5.17 29.85 0.15 -1.56 16 6 C -0.10 -1.98 4.66 30.59 0.14 -1.83 16 7 C -0.07 -1.79 2.04 -10.79 -0.02 -1.81 16 8 H 0.06 1.70 7.95 -2.39 -0.02 1.68 16 9 C -0.15 -3.81 8.69 71.98 0.63 -3.18 16 10 C -0.12 -3.58 5.00 29.85 0.15 -3.43 16 11 C 0.53 20.95 7.79 87.66 0.68 21.63 16 12 O -0.59 -26.76 14.74 -3.02 -0.04 -26.80 16 13 N -0.64 -26.96 3.69 -859.28 -3.17 -30.14 16 14 C 0.09 3.68 7.83 83.09 0.65 4.33 16 15 C 0.22 10.44 1.57 -11.29 -0.02 10.42 16 16 O -0.59 -30.89 13.53 -148.98 -2.02 -32.90 16 17 C -0.55 -27.30 8.70 25.60 0.22 -27.08 16 18 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 19 C 0.03 1.55 5.39 84.65 0.46 2.00 16 20 N -0.92 -45.78 11.01 21.45 0.24 -45.54 16 21 Si 0.97 38.77 29.54 68.60 2.03 40.80 16 22 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 25 C 0.10 4.63 8.03 83.17 0.67 5.30 16 26 H 0.06 1.00 7.84 -2.39 -0.02 0.98 16 27 H 0.07 0.90 7.71 -2.38 -0.02 0.88 16 28 H 0.06 1.03 7.67 -2.39 -0.02 1.02 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.76 7.71 -2.38 -0.02 0.74 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.77 8.05 -2.91 -0.02 1.75 16 33 H 0.06 1.28 5.86 -2.39 -0.01 1.26 16 34 H 0.07 1.34 6.57 -2.39 -0.02 1.32 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.07 1.48 6.57 -2.39 -0.02 1.47 16 39 H 0.04 1.41 5.95 -2.38 -0.01 1.40 16 40 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.09 3.65 8.10 -2.39 -0.02 3.63 16 44 H 0.39 20.63 6.33 -74.06 -0.47 20.16 16 45 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 46 H 0.10 4.04 8.10 -2.39 -0.02 4.02 16 47 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -58.07 376.32 2.67 -55.39 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: 0.47 Total: 41.71 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.17 Total: -2.52 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -2.94 Total: -75.68 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -2.06 Total: -59.71 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -58.07 2.67 -55.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563188159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.551 kcal (2) G-P(sol) polarization free energy of solvation -58.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds