Wall clock time and date at job start Tue Mar 31 2020 07:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47074 * 2 1 4 4 C 1.52999 * 109.47205 * 240.00003 * 2 1 3 5 5 C 1.53002 * 109.47205 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47140 * 59.99872 * 5 4 2 7 7 H 1.08994 * 109.47022 * 180.02562 * 6 5 4 8 8 O 1.42902 * 109.47096 * 60.00118 * 6 5 4 9 9 C 1.53008 * 109.47058 * 300.00297 * 6 5 4 10 10 H 1.09001 * 109.46787 * 300.00252 * 9 6 5 11 11 C 1.52992 * 109.47057 * 180.02562 * 9 6 5 12 12 H 1.09006 * 109.58661 * 51.05132 * 11 9 6 13 13 C 1.53196 * 109.58848 * 290.76927 * 11 9 6 14 14 C 1.53043 * 109.31267 * 185.57612 * 13 11 9 15 15 C 1.53044 * 109.53640 * 61.36588 * 14 13 11 16 16 C 1.53185 * 109.31288 * 298.63522 * 15 14 13 17 17 N 1.46922 * 108.78087 * 54.63523 * 16 15 14 18 18 C 1.34778 * 120.63657 * 126.38740 * 17 16 15 19 19 O 1.21679 * 120.00291 * 183.89140 * 18 17 16 20 20 C 1.46372 * 119.99639 * 3.89721 * 18 17 16 21 21 H 1.08010 * 120.00387 * 5.74973 * 20 18 17 22 22 C 1.40047 * 120.00253 * 185.75236 * 20 18 17 23 23 N 1.30670 * 119.99605 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 120.00500 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46674 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47369 * 119.99429 * 24 22 20 27 27 H 1.48496 * 109.46835 * 240.00000 * 24 22 20 28 28 C 1.52995 * 109.47141 * 59.99888 * 9 6 5 29 29 H 1.08999 * 109.47404 * 299.99788 * 1 2 3 30 30 H 1.08996 * 109.46704 * 60.00494 * 1 2 3 31 31 H 1.08999 * 109.46633 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47209 * 59.99898 * 4 2 1 33 33 H 1.09001 * 109.46851 * 299.99530 * 4 2 1 34 34 H 1.08997 * 109.47074 * 299.99997 * 5 4 2 35 35 H 1.09000 * 109.47252 * 179.97438 * 5 4 2 36 36 H 0.96693 * 114.00088 * 59.99972 * 8 6 5 37 37 H 1.08990 * 109.49745 * 305.53078 * 13 11 9 38 38 H 1.08996 * 109.49466 * 65.59716 * 13 11 9 39 39 H 1.09000 * 109.45908 * 181.38707 * 14 13 11 40 40 H 1.09001 * 109.46039 * 301.36162 * 14 13 11 41 41 H 1.09007 * 109.49623 * 58.58418 * 15 14 13 42 42 H 1.09001 * 109.49633 * 178.64744 * 15 14 13 43 43 H 1.09004 * 109.58978 * 174.42176 * 16 15 14 44 44 H 1.09000 * 109.58517 * 294.70262 * 16 15 14 45 45 H 0.97005 * 120.00116 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.47225 * 60.00028 * 28 9 6 47 47 H 1.09000 * 109.47005 * 180.02562 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4415 -0.0003 7 1 5.1705 -1.4407 -0.0003 8 8 3.6048 -2.7890 0.0000 9 6 3.5705 -0.7203 1.2490 10 1 3.9334 0.3076 1.2487 11 6 4.0815 -1.4407 2.4982 12 1 5.1599 -1.5814 2.4234 13 6 3.3933 -2.8036 2.6228 14 6 3.8028 -3.4587 3.9439 15 6 3.3501 -2.5803 5.1126 16 6 4.0378 -1.2149 5.0162 17 7 3.7677 -0.6417 3.6907 18 6 3.2419 0.5935 3.5707 19 8 2.9570 1.0293 2.4709 20 6 3.0138 1.4107 4.7634 21 1 3.3513 1.0633 5.7288 22 6 2.3579 2.6431 4.6529 23 7 1.9500 3.0637 3.4849 24 14 2.0673 3.6865 6.1749 25 1 2.6213 2.9914 7.3645 26 1 2.7403 5.0000 6.0105 27 1 0.6090 3.8970 6.3596 28 6 2.0406 -0.7209 1.2493 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 1.6768 -1.7489 -1.2491 34 1 3.9330 0.3071 -1.2498 35 1 3.9334 -1.2349 -2.1393 36 1 3.8901 -3.3071 -0.7649 37 1 2.3120 -2.6682 2.6036 38 1 3.6949 -3.4408 1.7914 39 1 3.3338 -4.4394 4.0237 40 1 4.8866 -3.5710 3.9729 41 1 2.2691 -2.4470 5.0700 42 1 3.6208 -3.0590 6.0537 43 1 3.6449 -0.5525 5.7876 44 1 5.1125 -1.3367 5.1519 45 1 1.4959 3.9175 3.4082 46 1 1.6776 -1.7486 1.2495 47 1 1.6772 -0.2066 2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564830195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:38 Heat of formation + Delta-G solvation = -95.173359 kcal Electronic energy + Delta-G solvation = -27007.798667 eV Core-core repulsion = 23575.892722 eV Total energy + Delta-G solvation = -3431.905944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51575 -39.19068 -37.52385 -36.26470 -34.73245 -33.55188 -33.04336 -31.93008 -29.55015 -28.32232 -26.99698 -25.51906 -24.38717 -22.97214 -22.21915 -21.29507 -20.56958 -19.84227 -18.17801 -17.60578 -17.52231 -16.55327 -16.30131 -15.98725 -15.67312 -15.28989 -15.10515 -14.82150 -14.63380 -14.34254 -14.30526 -13.96778 -13.84591 -13.61764 -13.06603 -12.96023 -12.90895 -12.88431 -12.54991 -12.35323 -12.22214 -12.12011 -12.06749 -11.95502 -11.73636 -11.52892 -11.35203 -11.25848 -11.07846 -10.97730 -10.73236 -10.46417 -10.23970 -9.01867 -8.68813 -8.08225 -6.68459 1.37497 1.39119 1.53696 2.26128 2.57863 2.97136 3.56947 3.73783 3.88338 3.95710 4.02991 4.15445 4.19171 4.24213 4.31233 4.41502 4.43914 4.58304 4.61702 4.70791 4.73090 4.80266 4.83821 4.90716 4.96498 5.01144 5.01534 5.09610 5.15841 5.18935 5.22099 5.29152 5.31045 5.37018 5.46022 5.50862 5.54704 5.59030 5.66647 5.74276 5.85134 5.97831 6.08468 6.28333 6.65961 7.00165 7.14334 7.61557 8.61528 8.82714 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.007192 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.917907 B = 3892.407142 C = 5221.054722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.030 0.970 4 C -0.095 4.095 5 C -0.141 4.141 6 C 0.110 3.890 7 H 0.051 0.949 8 O -0.557 6.557 9 C -0.068 4.068 10 H 0.082 0.918 11 C 0.161 3.839 12 H 0.042 0.958 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.116 3.884 17 N -0.641 5.641 18 C 0.539 3.461 19 O -0.574 6.574 20 C -0.574 4.574 21 H 0.078 0.922 22 C 0.038 3.962 23 N -0.812 5.812 24 Si 0.979 3.021 25 H -0.253 1.253 26 H -0.272 1.272 27 H -0.273 1.273 28 C -0.061 4.061 29 H 0.023 0.977 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.380 0.620 37 H 0.037 0.963 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.268 0.732 46 H 0.038 0.962 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 -11.762 -4.658 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.048 0.952 4 C -0.133 4.133 5 C -0.179 4.179 6 C 0.051 3.949 7 H 0.069 0.931 8 O -0.365 6.365 9 C -0.087 4.087 10 H 0.099 0.901 11 C 0.057 3.943 12 H 0.060 0.940 13 C -0.159 4.159 14 C -0.150 4.150 15 C -0.165 4.165 16 C -0.007 4.007 17 N -0.378 5.378 18 C 0.344 3.656 19 O -0.459 6.459 20 C -0.610 4.610 21 H 0.096 0.904 22 C -0.177 4.177 23 N -0.442 5.442 24 Si 0.800 3.200 25 H -0.176 1.176 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.098 4.098 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.229 0.771 37 H 0.056 0.944 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.681 -11.204 -4.798 12.480 hybrid contribution -0.016 0.978 0.380 1.050 sum 2.665 -10.226 -4.418 11.454 Atomic orbital electron populations 1.21684 0.95844 1.01141 1.00351 1.20963 0.95014 0.98247 0.96080 0.95150 1.21397 0.95205 1.00542 0.96117 1.22127 0.96614 1.00727 0.98413 1.21913 0.95870 0.82239 0.94869 0.93115 1.86626 1.78082 1.22751 1.49017 1.21675 0.96862 0.98490 0.91636 0.90076 1.20998 0.96391 0.91430 0.85455 0.94038 1.22149 0.99277 0.95840 0.98624 1.21522 1.01036 0.98305 0.94150 1.21879 0.99514 0.95487 0.99670 1.21538 0.98700 0.94822 0.85683 1.48066 1.67775 1.16387 1.05600 1.18287 0.77023 0.80204 0.90082 1.90528 1.54963 1.72985 1.27472 1.21525 1.40678 1.04267 0.94578 0.90364 1.26659 0.92952 0.98562 0.99503 1.70155 1.29372 1.18662 1.26050 0.85243 0.78315 0.77936 0.78510 1.17591 1.19748 1.19818 1.21424 0.94710 0.96541 0.97173 0.95733 0.92030 0.92229 0.91997 0.91050 0.93181 0.89206 0.77102 0.94381 0.87718 0.90916 0.91584 0.94021 0.89338 0.90848 0.92783 0.92199 0.94345 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.20 71.98 0.66 -4.19 16 2 C -0.08 -3.36 2.68 -10.79 -0.03 -3.39 16 3 H 0.03 1.45 8.06 -2.39 -0.02 1.43 16 4 C -0.10 -2.87 5.06 30.59 0.15 -2.71 16 5 C -0.14 -3.94 5.64 30.60 0.17 -3.77 16 6 C 0.11 3.34 3.20 30.60 0.10 3.44 16 7 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 8 O -0.56 -14.14 8.51 -148.98 -1.27 -15.41 16 9 C -0.07 -2.81 1.39 -10.80 -0.02 -2.82 16 10 H 0.08 4.17 5.68 -25.39 -0.14 4.02 16 11 C 0.16 6.36 2.64 44.97 0.12 6.48 16 12 H 0.04 1.59 8.13 -2.38 -0.02 1.57 16 13 C -0.12 -4.06 4.28 30.67 0.13 -3.93 16 14 C -0.11 -3.18 5.88 30.62 0.18 -3.00 16 15 C -0.13 -3.96 6.08 30.67 0.19 -3.77 16 16 C 0.12 4.41 6.31 86.36 0.55 4.95 16 17 N -0.64 -29.24 2.95 -800.08 -2.36 -31.60 16 18 C 0.54 30.02 6.62 86.36 0.57 30.59 16 19 O -0.57 -34.24 8.28 -4.28 -0.04 -34.28 16 20 C -0.57 -32.23 8.78 24.83 0.22 -32.01 16 21 H 0.08 4.09 5.80 -2.91 -0.02 4.07 16 22 C 0.04 2.13 5.50 85.30 0.47 2.60 16 23 N -0.81 -48.49 11.84 21.83 0.26 -48.23 16 24 Si 0.98 41.74 29.56 68.60 2.03 43.77 16 25 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 C -0.06 -2.69 2.69 30.59 0.08 -2.60 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.00 7.68 -2.39 -0.02 1.98 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.38 5.87 9.08 -74.06 -0.67 5.20 16 37 H 0.04 1.47 5.99 -2.39 -0.01 1.45 16 38 H 0.10 3.17 5.42 -2.39 -0.01 3.16 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.07 2.99 5.40 -2.38 -0.01 2.98 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 45 H 0.27 14.76 8.29 -92.70 -0.77 13.99 16 46 H 0.04 1.61 5.75 -2.39 -0.01 1.60 16 47 H 0.04 2.15 5.21 -2.50 -0.01 2.14 16 Total: -1.00 -69.07 336.61 2.33 -66.73 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.16 Total: 33.16 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 3.55 Total: -14.14 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -2.10 Total: -79.83 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -1.30 Total: -49.68 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -69.07 2.33 -66.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564830195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.441 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds