Wall clock time and date at job start Tue Mar 31 2020 08:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00386 * 2 1 4 4 C 1.52991 * 109.47343 * 181.55148 * 3 2 1 5 5 C 1.52996 * 109.47269 * 182.17162 * 4 3 2 6 6 C 1.50702 * 115.55339 * 295.18916 * 5 4 3 7 7 O 1.21277 * 120.00080 * 113.45003 * 6 5 4 8 8 N 1.34770 * 119.99655 * 293.45012 * 6 5 4 9 9 C 1.46928 * 120.62996 * 174.74746 * 8 6 5 10 10 C 1.53186 * 108.77835 * 126.41252 * 9 8 6 11 11 C 1.53039 * 109.31573 * 54.63609 * 10 9 8 12 12 C 1.53001 * 109.46048 * 178.61428 * 11 10 9 13 13 C 1.50699 * 109.46710 * 184.99711 * 12 11 10 14 14 H 1.08001 * 120.00516 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99799 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99909 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99868 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47157 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47010 * 120.00357 * 17 15 13 20 20 H 1.48504 * 109.47217 * 239.99923 * 17 15 13 21 21 C 1.53040 * 109.53515 * 298.63809 * 11 10 9 22 22 C 1.46927 * 120.63648 * 354.76856 * 8 6 5 23 23 C 1.53010 * 117.49844 * 80.86086 * 5 4 3 24 24 C 1.53001 * 117.49735 * 149.51635 * 5 4 3 25 25 H 1.08997 * 109.47301 * 301.75338 * 1 2 3 26 26 H 1.08995 * 109.46879 * 61.74944 * 1 2 3 27 27 H 1.08996 * 109.47109 * 181.75132 * 1 2 3 28 28 H 1.09008 * 109.46892 * 61.55400 * 3 2 1 29 29 H 1.08993 * 109.46892 * 301.55779 * 3 2 1 30 30 H 1.09001 * 109.47303 * 62.17593 * 4 3 2 31 31 H 1.09003 * 109.47410 * 302.17901 * 4 3 2 32 32 H 1.09003 * 109.58513 * 6.62184 * 9 8 6 33 33 H 1.09005 * 109.70452 * 246.27175 * 9 8 6 34 34 H 1.09001 * 109.49593 * 294.68067 * 10 9 8 35 35 H 1.09004 * 109.49995 * 174.58695 * 10 9 8 36 36 H 1.09004 * 109.45926 * 58.65376 * 11 10 9 37 37 H 1.08995 * 109.47238 * 304.99804 * 12 11 10 38 38 H 1.08997 * 109.47144 * 65.00372 * 12 11 10 39 39 H 0.97004 * 119.99390 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.49757 * 181.31763 * 21 11 10 41 41 H 1.09001 * 109.49790 * 301.40840 * 21 11 10 42 42 H 1.08998 * 109.58189 * 353.37203 * 22 8 6 43 43 H 1.08997 * 109.58842 * 113.79627 * 22 8 6 44 44 H 1.08995 * 117.49630 * 215.00400 * 23 5 4 45 45 H 1.09001 * 117.49133 * 0.02562 * 23 5 4 46 46 H 1.08993 * 117.50130 * 359.97438 * 24 5 4 47 47 H 1.09004 * 117.50089 * 145.00189 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5350 1.1848 -0.0391 5 6 4.1586 2.5808 0.0156 6 6 3.8686 3.4690 -1.1668 7 8 3.1922 4.4656 -1.0251 8 7 4.3610 3.1559 -2.3816 9 6 3.9939 3.9461 -3.5646 10 6 5.2750 4.4092 -4.2653 11 6 6.1534 3.1935 -4.5695 12 6 7.4182 3.6486 -5.3003 13 6 8.2240 2.4423 -5.7083 14 1 7.8694 1.4503 -5.4705 15 6 9.4137 2.6050 -6.3860 16 7 9.8454 3.8130 -6.6760 17 14 10.4122 1.1097 -6.8924 18 1 9.7138 -0.1244 -6.4516 19 1 10.5626 1.0920 -8.3697 20 1 11.7540 1.1728 -6.2591 21 6 6.5416 2.5023 -3.2604 22 6 5.2748 2.0175 -2.5484 23 6 4.2789 3.2476 1.3875 24 6 5.5292 2.7166 0.6819 25 1 -0.3634 0.5408 0.8738 26 1 -0.3633 0.4864 -0.9052 27 1 -0.3633 -1.0271 0.0314 28 1 1.7109 1.8364 0.9037 29 1 1.6668 1.8560 -0.8756 30 1 3.8367 0.6880 -0.9612 31 1 3.8754 0.6010 0.8162 32 1 3.4110 4.8145 -3.2575 33 1 3.4049 3.3337 -4.2474 34 1 5.8170 5.0963 -3.6154 35 1 5.0182 4.9146 -5.1963 36 1 5.6017 2.4953 -5.1991 37 1 7.1404 4.2171 -6.1877 38 1 8.0143 4.2767 -4.6382 39 1 10.6825 3.9274 -7.1525 40 1 7.1863 1.6503 -3.4762 41 1 7.0717 3.2072 -2.6200 42 1 5.5372 1.6133 -1.5707 43 1 4.7916 1.2457 -3.1474 44 1 4.1482 4.3287 1.4347 45 1 3.9141 2.6915 2.2510 46 1 5.9864 1.8116 1.0816 47 1 6.2212 3.4485 0.2650 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565018261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:59 Heat of formation + Delta-G solvation = -96.817889 kcal Electronic energy + Delta-G solvation = -24806.997542 eV Core-core repulsion = 21375.020285 eV Total energy + Delta-G solvation = -3431.977256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.67230 -39.29584 -38.68363 -37.61762 -35.68900 -33.96880 -32.19847 -31.89993 -29.87572 -27.52375 -26.70766 -25.12136 -24.21046 -23.91626 -23.29013 -22.42109 -20.94725 -19.50893 -18.41007 -17.89951 -17.40003 -17.29371 -16.78275 -16.52107 -16.23814 -15.89957 -15.59130 -15.28515 -14.99434 -14.84387 -14.48441 -14.25510 -14.12503 -13.92271 -13.45891 -13.38226 -13.05620 -12.96986 -12.69326 -12.56160 -12.43499 -12.42345 -12.29524 -12.20543 -12.09832 -11.74485 -11.51754 -11.36008 -11.13780 -11.03680 -10.84278 -10.68281 -10.62269 -10.51320 -9.63460 -8.15495 -6.24997 1.42207 1.43337 1.49647 1.55600 1.94578 2.43936 2.52011 2.91895 3.18581 3.40940 3.68795 3.85111 3.92543 3.96002 4.02922 4.07867 4.16678 4.19929 4.28327 4.39302 4.48248 4.50356 4.53825 4.56228 4.65379 4.74198 4.78736 4.79888 4.84837 4.87800 4.95011 4.97433 5.01675 5.04313 5.11696 5.21029 5.30539 5.33214 5.40142 5.54603 5.60045 5.81892 5.90191 6.16142 6.29602 6.41309 6.92177 7.10442 7.44016 8.96770 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.003462 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.561144 B = 8086.607357 C = 8384.714076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.066 3.934 4 C -0.069 4.069 5 C -0.166 4.166 6 C 0.545 3.455 7 O -0.585 6.585 8 N -0.601 5.601 9 C 0.117 3.883 10 C -0.120 4.120 11 C -0.073 4.073 12 C 0.033 3.967 13 C -0.524 4.524 14 H 0.069 0.931 15 C -0.004 4.004 16 N -0.939 5.939 17 Si 0.960 3.040 18 H -0.256 1.256 19 H -0.284 1.284 20 H -0.282 1.282 21 C -0.112 4.112 22 C 0.112 3.888 23 C -0.140 4.140 24 C -0.143 4.143 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.063 0.937 37 H -0.015 1.015 38 H -0.016 1.016 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.135 0.865 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 -7.941 16.307 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.010 4.010 4 C -0.107 4.107 5 C -0.169 4.169 6 C 0.335 3.665 7 O -0.466 6.466 8 N -0.332 5.332 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.092 4.092 12 C -0.004 4.004 13 C -0.562 4.562 14 H 0.087 0.913 15 C -0.201 4.201 16 N -0.580 5.580 17 Si 0.786 3.214 18 H -0.179 1.179 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.150 4.150 22 C -0.010 4.010 23 C -0.177 4.177 24 C -0.180 4.180 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.147 0.853 46 H 0.153 0.847 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.114 -7.510 16.279 23.449 hybrid contribution 0.664 0.412 -0.993 1.264 sum -14.450 -7.098 15.285 22.200 Atomic orbital electron populations 1.22918 0.79674 1.03948 1.00530 1.87804 1.21296 1.28142 1.95543 1.22426 0.94294 0.84251 1.00038 1.21006 0.92466 0.91958 1.05251 1.21240 1.05258 0.97265 0.93167 1.20094 0.78206 0.84510 0.83721 1.90635 1.41856 1.29073 1.85046 1.48180 1.46408 1.31519 1.07122 1.21577 0.96457 0.96164 0.86381 1.21893 0.95858 0.98109 1.00014 1.21044 0.95790 0.95997 0.96360 1.19013 0.92555 0.95316 0.93515 1.21698 1.05405 0.93941 1.35169 0.91332 1.25979 0.99269 0.98592 0.96290 1.70127 1.22291 1.23418 1.42127 0.85462 0.78410 0.79918 0.77658 1.17924 1.21028 1.20818 1.21777 0.96800 1.00836 0.95571 1.22009 0.89094 0.87268 1.02588 1.23111 1.00573 1.00870 0.93149 1.23253 0.89051 1.04616 1.01083 0.93103 0.94153 0.87970 0.92441 0.95287 0.90022 0.87706 0.90306 0.90022 0.93701 0.91076 0.91881 0.99706 0.99759 0.93094 0.90379 0.93548 0.87388 0.90086 0.89596 0.85313 0.84675 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.31 10.70 -148.98 -1.59 -9.90 16 3 C 0.07 1.32 5.77 71.98 0.42 1.74 16 4 C -0.07 -1.21 5.11 30.59 0.16 -1.06 16 5 C -0.17 -3.41 0.75 -52.92 -0.04 -3.45 16 6 C 0.55 15.67 6.36 87.66 0.56 16.23 16 7 O -0.59 -20.97 16.14 -3.02 -0.05 -21.02 16 8 N -0.60 -16.92 2.97 -818.92 -2.43 -19.36 16 9 C 0.12 3.45 6.44 86.36 0.56 4.00 16 10 C -0.12 -4.13 5.36 30.67 0.16 -3.97 16 11 C -0.07 -2.82 2.10 -10.77 -0.02 -2.84 16 12 C 0.03 1.69 4.45 29.85 0.13 1.82 16 13 C -0.52 -28.34 8.39 25.60 0.21 -28.12 16 14 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 15 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 16 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 17 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 C -0.11 -3.70 5.19 30.67 0.16 -3.54 16 22 C 0.11 2.82 5.29 86.36 0.46 3.28 16 23 C -0.14 -2.47 9.78 30.62 0.30 -2.17 16 24 C -0.14 -2.43 8.99 30.62 0.28 -2.16 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.03 0.68 7.77 -2.39 -0.02 0.66 16 30 H 0.08 1.46 6.44 -2.39 -0.02 1.44 16 31 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.08 2.45 7.00 -2.39 -0.02 2.43 16 33 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.08 2.71 6.91 -2.39 -0.02 2.69 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 2.21 4.86 -2.39 -0.01 2.20 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.09 1.85 8.01 -2.39 -0.02 1.83 16 45 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.47 370.99 4.19 -65.28 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.92 Total: 14.79 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 5.04 Total: -18.41 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.15 Total: -75.97 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.64 Total: -30.92 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -69.47 4.19 -65.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565018261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.535 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds